mRNA_P-littoralis_Contig15.152.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.152.1
Unique NamemRNA_P-littoralis_Contig15.152.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:525983..526420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size438
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.25e-17
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size438
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789712.8094835-CDS-P-littoralis_Contig15:525982..5264201680789712.8094835-CDS-P-littoralis_Contig15:525982..526420Pylaiella littoralis U1_48CDSP-littoralis_Contig15 525983..526420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.152.1prot_P-littoralis_Contig15.152.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 525983..526420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.152.1

>prot_P-littoralis_Contig15.152.1 ID=prot_P-littoralis_Contig15.152.1|Name=mRNA_P-littoralis_Contig15.152.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
MSIREVNDFNPVTSTGRPCQWILNHCRGGREAAENTWWGMVLPEMAEKSR
QIRDPRGQEGFGEYTPVDTRGVVKGNRQDFVPYPAGGVWAERHKHHVDGR
SISLVQKAAFDVLSDAVRSTKQRRGRRSLATDVLPPLVRRLDIDT*
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mRNA from alignment at P-littoralis_Contig15:525983..526420-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.152.1 ID=mRNA_P-littoralis_Contig15.152.1|Name=mRNA_P-littoralis_Contig15.152.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig15:525983..526420- (Pylaiella littoralis U1_48)
ATGTCGATCCGAGAGGTGAACGACTTTAACCCTGTCACCTCAACCGGTCG
GCCATGTCAGTGGATTCTAAATCACTGCCGTGGTGGCAGGGAAGCGGCGG
AGAACACATGGTGGGGTATGGTGCTGCCTGAGATGGCCGAAAAGTCTAGA
CAGATCAGGGACCCTAGGGGACAGGAGGGTTTCGGGGAGTATACTCCTGT
CGACACACGGGGCGTGGTTAAAGGGAACAGACAGGACTTCGTACCGTACC
CGGCGGGAGGTGTGTGGGCAGAGCGGCACAAACACCATGTTGACGGCCGA
AGCATCAGTTTAGTGCAAAAGGCTGCGTTCGACGTGTTATCGGATGCAGT
CCGCAGCACAAAGCAACGCCGTGGGCGTCGTAGTTTGGCGACTGACGTGT
TGCCGCCTCTTGTTCGGCGATTAGATATTGATACTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:525983..526420-

>mRNA_P-littoralis_Contig15.152.1 ID=mRNA_P-littoralis_Contig15.152.1|Name=mRNA_P-littoralis_Contig15.152.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig15:525983..526420- (Pylaiella littoralis U1_48)
ATGTCGATCCGAGAGGTGAACGACTTTAACCCTGTCACCTCAACCGGTCG
GCCATGTCAGTGGATTCTAAATCACTGCCGTGGTGGCAGGGAAGCGGCGG
AGAACACATGGTGGGGTATGGTGCTGCCTGAGATGGCCGAAAAGTCTAGA
CAGATCAGGGACCCTAGGGGACAGGAGGGTTTCGGGGAGTATACTCCTGT
CGACACACGGGGCGTGGTTAAAGGGAACAGACAGGACTTCGTACCGTACC
CGGCGGGAGGTGTGTGGGCAGAGCGGCACAAACACCATGTTGACGGCCGA
AGCATCAGTTTAGTGCAAAAGGCTGCGTTCGACGTGTTATCGGATGCAGT
CCGCAGCACAAAGCAACGCCGTGGGCGTCGTAGTTTGGCGACTGACGTGT
TGCCGCCTCTTGTTCGGCGATTAGATATTGATACTTGA
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