mRNA_P-littoralis_Contig15.140.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig15.140.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.850e-24 Identity = 68/159 (42.77%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 73 LSVPPNLLVYDAACKTVRAFEERCPGLL-DNGGKLPRVAVEAGSTAVGRVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQA 546
+ V P LL YDAACK V+ E+ CP LL D G L R G VV P L H+GN+ SAT+ + + P +D+YA+ + P+P QS+ D AL+ AA+ G L A TRAL LH GV++LSLFEVLVF+Y+WH +A
Sbjct: 697 MKVKPYLLSYDAACKLVKELEKYCPALLKDKTGVLQR-------DGEGNVVFPELVHVGNNRNSATRETAARTFQDLPRTTDREDMYAVIETAGPRPGLQSEVDSDEALFWAAKFSKVVGGQSKLTA-TRALDALHRDGVRVLSLFEVLVFTYYWHRKA 847
BLAST of mRNA_P-littoralis_Contig15.140.1 vs. uniprot
Match: A0A6H5JGB2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB2_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.080e-18 Identity = 73/209 (34.93%), Postives = 100/209 (47.85%), Query Frame = 1
Query: 37 ACTHLRCRLTKQLSVPPNLLVYDAACKTVRAFEERCPGLLDNGGKLPRVA------------------VEAGSTA-VGRVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLR-AATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 603
AC + C L P L +YDA CK V E+ PG+L N G+ R+ E G A R+ L LAHLG++S S T + S P R S DVYALK + Q+Q + ++ L+ +A QG PE + AATRA+ L +G+++LS FEVLVF+Y W E + LG+ GWT +
Sbjct: 234 ACMTIACSLVTLGQQTPVLGMYDAGCKAVAHMEKHLPGVLQNRGRPTRLGDDGVGGGGSGYSNAASNDTEDGEPAPTPRIFLQALAHLGSNSASTTVEAPQVSLPVPPKRDSKVDVYALKAAAQGD-RVQNQVNVYDLLHASAETQGPV--PEAVNLAATRAVAALREAGIRVLSFFEVLVFTYVWLRNIAEDEPGMLELGATGWTLRR 439
BLAST of mRNA_P-littoralis_Contig15.140.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 4.860e-13 Identity = 54/130 (41.54%), Postives = 71/130 (54.62%), Query Frame = 1
Query: 214 RVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 603
RV P LAHLG+HS S T + S P R S DVYALK + QSQ + ++ L+ +A QG L AATRA+ L +GV++LSLFEVL+F+Y W E + LG+ GWT +
Sbjct: 402 RVFFPALAHLGSHSSSTTVEAPQVSVPVPPKRDSKVDVYALKAAAQGD-RVQSQVNVYDLLHASAETQGPVPKAVNL-AATRAVAGLREAGVRVLSLFEVLIFTYVWLRNIAEDEPGMLELGATGWTLRR 529
BLAST of mRNA_P-littoralis_Contig15.140.1 vs. uniprot
Match: A0A6H5JN33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN33_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 1.190e-10 Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 214 RVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 603
RV LP LAHLG+++ S T + P R S D+ ALK + QSQ + ++ L+ +A QG L AATRA+ L +G+++LSLFEVLVF+Y W E + LG+ GWT +
Sbjct: 57 RVFLPALAHLGSNNASTTVEAPQVFLPVPPKRDSKVDLCALKAAAQGD-RVQSQVNVYDLLHASAETQGPVPKAANL-AATRAVAALWEAGIRVLSLFEVLVFTYVWLRNITEDEPDMLELGATGWTLRR 184
BLAST of mRNA_P-littoralis_Contig15.140.1 vs. uniprot
Match: A0A6H5KXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC8_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.760e-7 Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 1
Query: 214 RVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHG--SGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWT 594
RV P LAHLG++S S + + S P R S DVYAL + + QSQ + ++ L+ + QG L AATRA+ L +G+++LSLF+ LVF+Y W E + +G+ GWT
Sbjct: 50 RVFSPALAHLGSNSASTSVEAPQVSIHVPPKRYSKVDVYAL-NAAAQGDRGQSQVNVYDLLHASDETQGPVPKAVYL-AATRAVAALRDREAGIRVLSLFKALVFTYVWLRNIAEDEPGMLEIGATGWT 176
BLAST of mRNA_P-littoralis_Contig15.140.1 vs. uniprot
Match: A0A6H5KPP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP6_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 1.290e-6 Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 1
Query: 247 NHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 603
N+S S T + S TP R S DVYALK + Q+Q + ++ L+ +A +G L AATR + L + ++++SLFEVL+F+Y W E + +G+ GWT +
Sbjct: 15 NNSASTTVEAPQVSLPVTPKRDSKVDVYALKAAAQGD-RVQNQVNVYDLLHASAETRGPVPKAVNL-AATRDVAALREAAIRVISLFEVLIFTYVWLRNIAEDEPGMLEIGAPGWTLRR 131
BLAST of mRNA_P-littoralis_Contig15.140.1 vs. uniprot
Match: A0A6H5JT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT09_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 1.050e-5 Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 307 RVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 603
R S DVYALK + QSQ + ++ L +A QG L AATRA+ L +G+++L LFEVL+F+Y W E + LG+ GWT +
Sbjct: 43 RDSKVDVYALKAAAQGD-RVQSQLNVYDLLLASAETQGPVPKAVNL-AATRAVAALREAGIRVLFLFEVLIFTYVWLRNIAEDEPGMLELGATGWTLRR 139 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig15.140.1 >prot_P-littoralis_Contig15.140.1 ID=prot_P-littoralis_Contig15.140.1|Name=mRNA_P-littoralis_Contig15.140.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp SPLWRVSKISSSACTHLRCRLTKQLSVPPNLLVYDAACKTVRAFEERCPGback to top mRNA from alignment at P-littoralis_Contig15:495505..496469+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig15.140.1 ID=mRNA_P-littoralis_Contig15.140.1|Name=mRNA_P-littoralis_Contig15.140.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=965bp|location=Sequence derived from alignment at P-littoralis_Contig15:495505..496469+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig15:495505..496469+ >mRNA_P-littoralis_Contig15.140.1 ID=mRNA_P-littoralis_Contig15.140.1|Name=mRNA_P-littoralis_Contig15.140.1|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig15:495505..496469+ (Pylaiella littoralis U1_48)back to top |