mRNA_P-littoralis_Contig15.137.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.137.1
Unique NamemRNA_P-littoralis_Contig15.137.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5JWX4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX4_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.290e-58
Identity = 97/204 (47.55%), Postives = 136/204 (66.67%), Query Frame = 1
Query:   13 VTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPEAHHSLDKQSRLCDMFKNAFLAFLAVVDFPLEFRCWLWGIFPQIVSGDAIMKLSTNFATKIQIAKSRSSRTIDMDRGVILEKMTLLSPIAFGYS-VRFVIGAGEAGGHSPMWLSPGNRRSELFHLSKRG 621
            V V    CE CGI+ +ASDNWRETG+ NYNNSY+V +++LY CL+AF  GT I  FF  F+ PL +D  W   NP+    L   + L ++  N FLAFLA++D   EFRCW+WG FP I++ DA MK++ NF T  Q+  SR  + I+ D  + L +++++SP  FG + V+FV+GAGE  G++P W+SP  R SE+FH ++RG
Sbjct:  279 VNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSVLYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSKRLANGTNLLNVLNNIFLAFLALIDHTFEFRCWMWGKFPPILTFDACMKIACNFVTLGQVIASRPEQDINTDLVMNLLQLSMVSPAWFGGTRVQFVVGAGETVGNAPAWVSPDIRLSEIFHKTQRG 482          
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5L2N5_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N5_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 8.610e-58
Identity = 98/217 (45.16%), Postives = 136/217 (62.67%), Query Frame = 1
Query:   13 VTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPEAHHSLDKQSRLCDMFKNAFLAFLAVVDFPLEFRCWLWGIFPQIVSGDAIMKLSTNFATKIQIAKSRSSRTIDMDR------------GVILEKMTLLSPIAFGYS-VRFVIGAGEAGGHSPMWLSPGNRRSELFHLSKRGK 624
            V V    CE CGI+ +ASDNWRETG+ NYNNSY+V ++ILY CL+AF  GT I  FF  F+ PL +D  W   NP+    L   + L ++  N FLAFLA++D   EFRCW+WG FP I++ DA MK++ NF T  Q+  SR  + I+ D              + L +++++SP  FG + V+FV+GAGE  G++P W+SP  R SE FH ++RG+
Sbjct:  112 VNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSILYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSKRLANGTNLLNVLNNIFLAFLALIDHTFEFRCWMWGKFPPILTFDACMKIACNFVTLGQVIASRPEQDINTDLXXXXXXXXXXVLAMNLLQLSMVSPAWFGGTRVQFVVGAGETVGNAPAWVSPDIRLSENFHKTQRGR 328          
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5JPP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP3_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.530e-48
Identity = 90/204 (44.12%), Postives = 128/204 (62.75%), Query Frame = 1
Query:   13 VTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPEAHHSLDKQSRLCDMFKNAFLAFLAVVDFPLEFRCWLWGIFPQIVSGDAIMKLSTNFATKIQIAKSRSSRTIDMDRGVILEKMTLLSPIAFGYS-VRFVIGAGEAGGHSPMWLSPGNRRSELFHLSKRG 621
            V V    CE CGI+  A+DNWRETG+ NYNNSY+V ++ILY CL+AF  GT I   F  F+ PL +D  W   NP+    L   + L ++  + FLAFLA++D   EFRCW+WG FP +++ DA      N  T  Q+  S   + I+ D  + L +++++SP  FG + V+FV+GAGE  G++P W+SP  R SE+FH ++RG
Sbjct:  279 VNVHTNECETCGIHGFANDNWRETGLFNYNNSYLVELSILYRCLEAFTRGTTICAVFETFLEPLASDLVWIKANPDLSKRLANGTNLLNVLNSIFLAFLALIDHTFEFRCWMWGKFPPMLTFDAC-----NSVTLGQVIASTPEQDINTDLVMNLLQLSIVSPAWFGGTRVQFVVGAGETVGNAPAWVSPDIRLSEIFHKTQRG 477          
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5K6Y4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y4_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.870e-47
Identity = 89/204 (43.63%), Postives = 125/204 (61.27%), Query Frame = 1
Query:   13 VTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPEAHHSLDKQSRLCDMFKNAFLAFLAVVDFPLEFRCWLWGIFPQIVSGDAIMKLSTNFATKIQIAKSRSSRTIDMDRGVILEKMTLLSPIAFGYS-VRFVIGAGEAGGHSPMWLSPGNRRSELFHLSKRG 621
            V V    CE CGI+ +ASDNWRETG+ NYNNSY+V ++ILY CL+AF  GT I  FF  F+ PL +D  W   NP+    L   + L            A++    EFRCW+WG FP I++ DA MK++ NF T  Q+  SR  + I+    + L +++++SP  FG + V+FV+GAGE  G++P W+SP    SE+FH ++RG
Sbjct:  196 VNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSILYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSTRLANCTNLLXXXXXXXXX-XALIYHTFEFRCWMWGKFPPILTFDACMKIACNFVTLGQVIASRPEQDINTVLIMNLLQLSMVSPAWFGGTRVQFVVGAGETVGNAPAWVSPDILLSEIFHKTQRG 398          
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5KIT6_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIT6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 7.430e-42
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   13 VTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPEAHHSLDKQSRLCDMFKNAFLAFLAVVDFPLEFRCWLWGIFPQIVSGDAIMKLSTNFAT 414
            V V    CE CGI+ +ASDNWRETG+ NYNNSY+V +++LY CL+AF  GT I  FF  F+ PL +D  W   NP+    L     L ++  N FLAFLA++D   EFRCW+WG FP I++ DA MK++ NF T
Sbjct:   13 VNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSVLYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSKRLANGINLLNVLNNIFLAFLALIDHTFEFRCWMWGKFPPILTFDACMKIACNFVT 146          
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 6.410e-39
Identity = 70/142 (49.30%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   13 VTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPEAHHSLDKQSRLCDMFKNAFLAFLAVVDFPLEFRCWLWGIFPQIVSGDAIMKLSTNFATKIQIAKSR 438
            V V    CE CGI+ +AS+NWRETG+ NYNNSY+V ++ILY CL+AF  GT I  FF  F+ PL +D  W   NP+  + L   + L ++  N FLAFLA++D   EFRCW+W  FP I++ DA MK++ NF T  Q  K R
Sbjct:  208 VNVHTNECETCGIHGLASENWRETGLFNYNNSYLVELSILYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSNRLANGTNLLNVLNNIFLAFLALIDHTFEFRCWMWVKFPPILTFDACMKIACNFVTLGQRTKRR 349          
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5JGB2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.610e-27
Identity = 53/116 (45.69%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   13 VTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPEAHHSLDKQSRLCDMFKNAFLAFLAVVDFPLEFRCWLWGIF 360
            + V    CE   I+ +ASDNWRETG+ NYN SY+V + IL  CL+AF  GT +  F   F+ PL +D  W   NP+    L   + L ++  N FLAFLA++D   EFRCW+WG F
Sbjct:  112 MNVHENECETSAIHGLASDNWRETGLFNYNKSYLVELFILCRCLEAFTRGTTLSAFVETFLEPLASDLVWIKANPDLSKRLANGTNLLNVLNNIFLAFLALIDHAFEFRCWMWGSF 227          
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5L0Y4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.560e-21
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   13 VTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPE 240
            V V    CE CGI+ +ASDNWRETG+ NYNNSY+V +++LY CL+AF  GT I  FF  F+ PLG+D  W   NP+
Sbjct:  154 VNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSVLYRCLEAFTRGTTIGAFFETFLEPLGSDLVWIKANPD 229          
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5K0A2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A2_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.480e-18
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   10 TVTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPE 240
            TV+V    C+ CG + +ASDNWRETG+ NYNNSY+V + ILY CL+AF  GT I  FF   + PL +D  W   NP+
Sbjct:    3 TVSVHTNECKTCGNHGLASDNWRETGLFNYNNSYLVELAILYRCLEAFTRGTTISAFFETLLEPLASDLVWIKANPD 79          
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Match: A0A6H5JSN4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.210e-18
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   13 VTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDAFISGTPIQDFFTMFVAPLGADYSWAYNNPE 240
            V V    C  CGI+ +ASDNWRETG+ NYNNSY+V ++ILY CL+ F  GT    FF  F+ PL +D  W+  NP+
Sbjct:    4 VNVNTNGCATCGIHGLASDNWRETGLFNYNNSYLVELSILYRCLETFTRGTTKSAFFETFLEPLASDLVWSKANPD 79          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JWX4_9PHAE1.290e-5847.55CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L2N5_9PHAE8.610e-5845.16CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JPP3_9PHAE1.530e-4844.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K6Y4_9PHAE1.870e-4743.63CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KIT6_9PHAE7.430e-4250.75CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JGH9_9PHAE6.410e-3949.30CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JGB2_9PHAE3.610e-2745.69CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0Y4_9PHAE3.560e-2155.26CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0A2_9PHAE1.480e-1851.95CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JSN4_9PHAE8.210e-1851.32CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:494144..495093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size635
Hectar predicted targeting categoryother localisation
Exons2
Cds size633
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789712.652312-CDS-P-littoralis_Contig15:494143..4943941680789712.652312-CDS-P-littoralis_Contig15:494143..494394Pylaiella littoralis U1_48CDSP-littoralis_Contig15 494144..494394 +
1680789712.666-CDS-P-littoralis_Contig15:494709..4950911680789712.666-CDS-P-littoralis_Contig15:494709..495091Pylaiella littoralis U1_48CDSP-littoralis_Contig15 494710..495091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.137.1prot_P-littoralis_Contig15.137.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 494144..495091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.137.1

>prot_P-littoralis_Contig15.137.1 ID=prot_P-littoralis_Contig15.137.1|Name=mRNA_P-littoralis_Contig15.137.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=211bp
NVVTVTVERRVCEKCGIYAMASDNWRETGVCNYNNSYIVAVTILYNCLDA
FISGTPIQDFFTMFVAPLGADYSWAYNNPEAHHSLDKQSRLCDMFKNAFL
AFLAVVDFPLEFRCWLWGIFPQIVSGDAIMKLSTNFATKIQIAKSRSSRT
IDMDRGVILEKMTLLSPIAFGYSVRFVIGAGEAGGHSPMWLSPGNRRSEL
FHLSKRGKEEN
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mRNA from alignment at P-littoralis_Contig15:494144..495093+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.137.1 ID=mRNA_P-littoralis_Contig15.137.1|Name=mRNA_P-littoralis_Contig15.137.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=950bp|location=Sequence derived from alignment at P-littoralis_Contig15:494144..495093+ (Pylaiella littoralis U1_48)
AATGTCGTGACGGTAACCGTAGAGCGCCGTGTGTGCGAGAAATGTGGGAT CTACGCGATGGCGAGCGACAACTGGCGCGAGACGGGGGTATGCAACTACA ACAACTCCTACATCGTGGCAGTGACCATCCTGTACAACTGTCTTGATGCG TTCATCTCGGGCACGCCGATCCAGGATTTTTTTACCATGTTCGTGGCACC TCTAGGCGCGGACTACAGCTGGGCGTACAACAACCCTGAGGCACACCACA GGTACGGGGGTGTGATAAATGTGGAGAAACGACATAAAGTGTGGGAAGTG ATGGTGTACCTCTCCTAAAGAGCGTGTAGACTAGACGTGTCCTTGGATTG TTGTCTCCATGCCCTGCATGGTCAACCAACTATCTATCCCTTGTTGTGAA AGTGAAACATACATTCGACACCGCTGCGTTGCACATTACTTGTGCCAAGC ACGAGACGTTCGTGTACGGCATTCCTCAGTCCTCGTGCATCCTGTCTAAC GCTAACGTTTCCCTCCACACTTTTGTTTTGGTATGTTGGGGGATGGTCCT CGCACTATCACCGAAGCCTGGACAAACAATCCAGGTTGTGCGACATGTTC AAGAACGCCTTCCTCGCCTTCCTTGCTGTCGTCGACTTCCCGCTCGAGTT TCGCTGTTGGCTGTGGGGTATTTTTCCCCAAATTGTCAGTGGCGACGCGA TCATGAAGTTGTCTACGAACTTCGCGACCAAGATCCAAATTGCGAAATCG AGGTCATCGAGGACGATCGACATGGACAGGGGCGTCATCCTGGAAAAGAT GACCCTGCTCTCACCGATAGCTTTCGGCTACAGCGTTAGGTTTGTGATTG GAGCTGGGGAGGCGGGCGGCCATTCTCCTATGTGGCTTTCGCCGGGGAAC CGGCGTTCCGAGCTCTTCCATTTGTCCAAACGGGGCAAGGAAGAGAACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:494144..495093+

>mRNA_P-littoralis_Contig15.137.1 ID=mRNA_P-littoralis_Contig15.137.1|Name=mRNA_P-littoralis_Contig15.137.1|organism=Pylaiella littoralis U1_48|type=CDS|length=633bp|location=Sequence derived from alignment at P-littoralis_Contig15:494144..495093+ (Pylaiella littoralis U1_48)
AATGTCGTGACGGTAACCGTAGAGCGCCGTGTGTGCGAGAAATGTGGGAT
CTACGCGATGGCGAGCGACAACTGGCGCGAGACGGGGGTATGCAACTACA
ACAACTCCTACATCGTGGCAGTGACCATCCTGTACAACTGTCTTGATGCG
TTCATCTCGGGCACGCCGATCCAGGATTTTTTTACCATGTTCGTGGCACC
TCTAGGCGCGGACTACAGCTGGGCGTACAACAACCCTGAGGCACACCACA
GCCTGGACAAACAATCCAGGTTGTGCGACATGTTCAAGAACGCCTTCCTC
GCCTTCCTTGCTGTCGTCGACTTCCCGCTCGAGTTTCGCTGTTGGCTGTG
GGGTATTTTTCCCCAAATTGTCAGTGGCGACGCGATCATGAAGTTGTCTA
CGAACTTCGCGACCAAGATCCAAATTGCGAAATCGAGGTCATCGAGGACG
ATCGACATGGACAGGGGCGTCATCCTGGAAAAGATGACCCTGCTCTCACC
GATAGCTTTCGGCTACAGCGTTAGGTTTGTGATTGGAGCTGGGGAGGCGG
GCGGCCATTCTCCTATGTGGCTTTCGCCGGGGAACCGGCGTTCCGAGCTC
TTCCATTTGTCCAAACGGGGCAAGGAAGAGAAC
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