mRNA_P-littoralis_Contig15.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.126.1
Unique NamemRNA_P-littoralis_Contig15.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig15.126.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.660e-20
Identity = 58/102 (56.86%), Postives = 68/102 (66.67%), Query Frame = 2 
Query:   65 LLDYRDEYVGGFRCDSGEGAGPNVTDIELAGGRGGXXXXENLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS 370
            LLD+ + +V GFR +   GAGPNVT   LA     XXXXEN GE NT TG GEMASA  D T  E   ++G +HDDFLSRPI  D+SLS L+GAG S+G  S
Sbjct:  120 LLDHLETFVCGFRQEPVGGAGPNVTGTGLAXXXXXXXXXENAGEGNTLTGSGEMASAGGDLTTEEVPTQDGMDHDDFLSRPIAMDISLSALEGAGVSSGSGS 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7B4_9PHAE5.660e-2056.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:475099..475694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size596
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789712.5482645-UTR-P-littoralis_Contig15:475098..4753211680789712.5482645-UTR-P-littoralis_Contig15:475098..475321Pylaiella littoralis U1_48UTRP-littoralis_Contig15 475099..475321 +
1680789712.5648994-UTR-P-littoralis_Contig15:475471..4756941680789712.5648994-UTR-P-littoralis_Contig15:475471..475694Pylaiella littoralis U1_48UTRP-littoralis_Contig15 475472..475694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789712.5567503-CDS-P-littoralis_Contig15:475321..4754711680789712.5567503-CDS-P-littoralis_Contig15:475321..475471Pylaiella littoralis U1_48CDSP-littoralis_Contig15 475322..475471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.126.1prot_P-littoralis_Contig15.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 475322..475471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.126.1

>prot_P-littoralis_Contig15.126.1 ID=prot_P-littoralis_Contig15.126.1|Name=mRNA_P-littoralis_Contig15.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=50bp
MASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS*
back to top

mRNA from alignment at P-littoralis_Contig15:475099..475694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.126.1 ID=mRNA_P-littoralis_Contig15.126.1|Name=mRNA_P-littoralis_Contig15.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=596bp|location=Sequence derived from alignment at P-littoralis_Contig15:475099..475694+ (Pylaiella littoralis U1_48)
AGGAGTTGTACAACTTCTTCGTGGAAGCTCGAGTACCCGAGTCAAAAATA
TCTGGTTGCAAATCCTACTCGATTACCGCGACGAGTATGTGGGCGGGTTC
AGATGTGACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGAGCT
AGCAGGGGGTCGCGGCGGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCA
ACACCTCGACAGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACG
AGGGCGGAAGAATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCTATC
CCGACCGATTGTAAGGGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTG
CGTCTACCGGGGGTGATTCGTGAAGTAACTACCGAGGCAGGAGGTGAAGG
TTGGGATGTCGGTGGTATGTTTTTTTTGTTTTGCTTTGTCATAATGTAAT
TGATGTTCGCGGATCTGAGCTGCCAATCTGGTTTTGTCTTGCCAGTGTTA
TGTGCGTGTCAAAGTTGGCGTCTGGTCTGGTGGCGGTTTACCCTCGTCTC
GCCACAACGACCGCAGATGCCTTGCACACCTTAGACGCTCCAGAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig15:475099..475694+

>mRNA_P-littoralis_Contig15.126.1 ID=mRNA_P-littoralis_Contig15.126.1|Name=mRNA_P-littoralis_Contig15.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=150bp|location=Sequence derived from alignment at P-littoralis_Contig15:475099..475694+ (Pylaiella littoralis U1_48)
ATGGCCTCTGCCAGTTGTGATTCGACGAGGGCGGAAGAATCTGTGGAGGA
GGGGAGGGAACACGACGATTTTCTATCCCGACCGATTGTAAGGGATTTGT
CGCTGTCGATTTTGGACGGGGCGGGTGCGTCTACCGGGGGTGATTCGTGA
back to top