mRNA_P-littoralis_Contig15.93.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.93.1
Unique NamemRNA_P-littoralis_Contig15.93.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.93.1 vs. uniprot
Match: Q8QNM9_ESV1K (EsV-1-34 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM9_ESV1K)

HSP 1 Score: 315 bits (807), Expect = 1.450e-96
Identity = 211/561 (37.61%), Postives = 291/561 (51.87%), Query Frame = 1 
Query:    1 AGEFMDNIWEFTSDDLPQIITDFISTMKEMILGLKEKMAEKIAQIIQFLRDKVDLFVSKIKGVAVESYESFLERVVNPVVKFFVNNLINPTLLIFTKIKEFHELVWKTLSDAVDKFTGLKVFDFATEIVDVFQKIPEVFDSMKESIVKLINKLKRGVIGSLNQGINSSSAFVEERAN---GVLCDTNK--------------------------------------------------------------------------VIQSSERLINRITDGLNGSMNKVENKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKIDIKVKKIKPFGFVPEIRGIRRVSIPSLDVPDIPEAQFGEIKT---------------IVEIPDVDIKGPDDLTVDDIGIDV--------------------SIPGFGFITDRIAQIKASVHNIFNSAMEPLYSGASALMALVSTIIASATQLFHDYLSWTAIKDHISQLTSLAGAGVQKLKDFFVDDIVPAFIALIRTIQEPILEFVGKTTTFIWKFMTKLGGSVAALFKTAFQAITKI 1347
            AG +MDN+W+FT  +LP +I+DFI+T+K+ +LGLK++MAEKI  II FLRDK++LF SKIK VAV +YE F+E V+NPV+KFFV NL+ P +++F K  EF +L+W  LS+AVDKF  + + DF  ++VDVFQKIPE  D++K  +V LINK+K   IG +N GI  S   VE   N   G L D                                                                             VI+ +E                    XXXXXXXXXXXXXXX                 K+ +  K+I  F ++     +R ++I  +++P IP  +FG IK                 ++IP V+IK P D+                             SIPGFGFITD++ ++K S+  IF +AM PLY G + L+ALV +II+SA   F++YL+WTAIK  ++QL  LAG GV  LKD FV++IVPAF+ LIR + +PIL FV   T   W+FM KLG +V ++F  +++ ITK+
Sbjct:   85 AGVYMDNLWDFTKTELPGVISDFIATLKDQVLGLKDRMAEKINLIIAFLRDKIELFWSKIKNVAVSTYEKFMEVVINPVIKFFVANLLKPAIVVFEKNMEFRDLIWSVLSNAVDKFANIPIGDFVGDVVDVFQKIPEAMDNLKGLLVMLINKIKNDTIGVVNTGIRESIQGVETSVNFLSGKLDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVIKGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVPVNATVGIMEKVRNVKVPVIKKRI--FSWIKTPGKVRDINIDGVELPTIPVEKFGRIKEGLNIPNIPFKNIDIPALDIPTVNIKAPADIKXXXXXXXXXXXXXXXXXXXXXXXXFDLPSIPGFGFITDKVEKVKESIREIFETAMAPLYDGLATLIALVGSIISSAKHFFYNYLTWTAIKSRVTQLMGLAGEGVSLLKDLFVNEIVPAFMKLIRGMADPILAFVKAATDHTWRFMKKLGANVGSIFNKSYKVITKV 643
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BLAST of mRNA_P-littoralis_Contig15.93.1 vs. uniprot
Match: D8LP69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP69_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 2.030e-88
Identity = 216/566 (38.16%), Postives = 298/566 (52.65%), Query Frame = 1 
Query:    1 AGEFMDNIWEFTSDDLPQIITDFISTMKEMILGLKEKMAEKIAQIIQFLRDKVDLFVSKIKGVAVESYESFLERVVNPVVKFFVNNLINPTLLIFTKIKEFHELVWKTLSDAVDKFTGLKVFDFATEIVDVFQKIPEVFDSMKESIVKLINKLKRGVIGSLNQGINSSSAFVEERANGVLCDTNKVIQSSERLINRITDGLNG-----------------------------------------SMNKVENKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-----------------------------------------KIDIKVKKIKPFGFVPEIRGIRRVSIPSLDVPDIPEAQFGEIKT---------------IVEIPDVDIKGPDDLTVDDIGIDVS--------------------IPGFGFITDRIAQIKASVHNIFNSAMEPLYSGASALMALVSTIIASATQLFHDYLSWTAIKDHISQLTSLAGAGVQKLKDFFVDDIVPAFIALIRTIQEPILEFVGKTTTFIWKFMTKLGGSVAALFKTAFQAITKI 1347
            AG +MDN+W+FT  +LP +I+DFI+T+K+ ILGLK++MAEKI  I+ FLRDK++LF SK+KGVAV +YE F++ V+NPV+KFFV NL+ P  ++F KI EF ELVW  LS+A+DKF  + + +F  ++VDVFQK+PE  D +K  +V LINK+K   IG +N GI                                                                               +MN+VE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                          K  +K+   +P  ++     ++++ I  +++P IP  +FG IK                 ++IP V+IK P D+                              IPGFGFI+DR+ ++K S+  IF +AM PLY G + L+ALV +II+SA   F++YL+WTAIK  ++QL  LAG GV  LKD F+D+IVPAF+ LIR + +PIL FV   T   W+FM KLG +V ++F  +++ I K+
Sbjct:   85 AGVYMDNLWDFTKTELPGVISDFIATLKDQILGLKDRMAEKINLILTFLRDKMNLFWSKVKGVAVSTYERFMDVVINPVIKFFVANLLQPATVVFEKIMEFRELVWTVLSNAIDKFANIPIGNFVGDVVDVFQKLPEAMDDLKGFMVMLINKIKNETIGVVNTGIREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNMNRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMKRAKNTHIGYNKGFVKIN-FRPLNWISAPGEVKKIDIDEVELPTIPVEKFGRIKEDLNIPNIPFDQIDIPALDIPTVNIKAPADIKEXXXXXXXXXXXXXXXXXXXXXXXXXLPPIPGFGFISDRVEKVKESIREIFETAMAPLYDGLATLIALVGSIISSAKHFFYNYLTWTAIKSRVTQLMGLAGEGVSLLKDLFMDEIVPAFMKLIRAMADPILAFVKTATDHTWRFMKKLGTNVGSIFNESYRVIAKV 649
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNM9_ESV1K1.450e-9637.61EsV-1-34 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP69_ECTSI2.030e-8838.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:218597..219943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1347
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-34
Ec32 orthologEc-06_006430.1
Cds size1335
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789712.2445188-UTR-P-littoralis_Contig15:218596..2186081680789712.2445188-UTR-P-littoralis_Contig15:218596..218608Pylaiella littoralis U1_48UTRP-littoralis_Contig15 218597..218608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789712.2576282-CDS-P-littoralis_Contig15:218608..2199431680789712.2576282-CDS-P-littoralis_Contig15:218608..219943Pylaiella littoralis U1_48CDSP-littoralis_Contig15 218609..219943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.93.1prot_P-littoralis_Contig15.93.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 218609..219943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.93.1

>prot_P-littoralis_Contig15.93.1 ID=prot_P-littoralis_Contig15.93.1|Name=mRNA_P-littoralis_Contig15.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=445bp
MDNIWEFTSDDLPQIITDFISTMKEMILGLKEKMAEKIAQIIQFLRDKVD
LFVSKIKGVAVESYESFLERVVNPVVKFFVNNLINPTLLIFTKIKEFHEL
VWKTLSDAVDKFTGLKVFDFATEIVDVFQKIPEVFDSMKESIVKLINKLK
RGVIGSLNQGINSSSAFVEERANGVLCDTNKVIQSSERLINRITDGLNGS
MNKVENKINDVTKTMGGVVNKAVDTVNAVTRTLTKIRNAKIDIKVKKIKP
FGFVPEIRGIRRVSIPSLDVPDIPEAQFGEIKTIVEIPDVDIKGPDDLTV
DDIGIDVSIPGFGFITDRIAQIKASVHNIFNSAMEPLYSGASALMALVST
IIASATQLFHDYLSWTAIKDHISQLTSLAGAGVQKLKDFFVDDIVPAFIA
LIRTIQEPILEFVGKTTTFIWKFMTKLGGSVAALFKTAFQAITKI
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mRNA from alignment at P-littoralis_Contig15:218597..219943+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.93.1 ID=mRNA_P-littoralis_Contig15.93.1|Name=mRNA_P-littoralis_Contig15.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1347bp|location=Sequence derived from alignment at P-littoralis_Contig15:218597..219943+ (Pylaiella littoralis U1_48)
GCCGGTGAATTCATGGACAACATATGGGAGTTCACTTCCGACGATCTTCC
GCAGATCATCACCGATTTCATCTCCACCATGAAGGAGATGATCCTGGGCC
TGAAAGAAAAGATGGCCGAGAAGATAGCCCAGATCATCCAGTTCCTGCGG
GACAAGGTGGACCTTTTTGTTTCAAAGATAAAAGGCGTCGCAGTCGAATC
GTACGAGTCGTTCCTGGAACGAGTGGTCAACCCCGTGGTGAAGTTCTTCG
TAAACAACTTGATTAACCCCACGCTTCTGATCTTCACAAAGATCAAGGAG
TTTCACGAGCTGGTCTGGAAAACGCTGAGCGATGCCGTGGACAAGTTCAC
GGGTCTGAAGGTTTTCGATTTCGCCACCGAGATCGTCGACGTCTTCCAGA
AGATCCCGGAGGTGTTTGACAGCATGAAGGAGTCTATCGTCAAACTCATC
AACAAGCTGAAGAGGGGCGTCATCGGCAGCCTGAACCAGGGCATCAACTC
GAGCTCCGCGTTCGTCGAAGAGAGAGCCAACGGCGTCTTGTGCGACACCA
ACAAGGTCATTCAGAGCTCGGAGCGCTTGATCAACCGGATAACGGACGGT
CTCAACGGATCCATGAACAAGGTCGAGAACAAGATCAACGATGTGACGAA
AACGATGGGGGGTGTTGTCAACAAAGCCGTCGACACCGTAAACGCGGTGA
CCCGTACCCTTACGAAGATCAGGAATGCGAAAATTGATATTAAAGTCAAG
AAAATCAAACCATTTGGTTTTGTCCCAGAGATCAGGGGTATTCGACGAGT
CAGCATCCCGTCGCTCGACGTTCCCGACATCCCCGAGGCCCAGTTCGGCG
AGATCAAGACCATCGTGGAGATACCGGACGTCGATATCAAGGGCCCGGAC
GACTTGACCGTAGACGACATCGGCATCGACGTCAGCATCCCCGGCTTTGG
CTTCATCACGGACAGAATCGCACAGATCAAGGCCAGCGTCCACAACATTT
TCAACAGCGCCATGGAGCCTCTGTACAGCGGGGCGTCGGCCCTGATGGCG
CTCGTCTCCACCATCATCGCCAGCGCGACACAGCTGTTCCACGACTACCT
GTCGTGGACGGCGATCAAGGACCACATCTCGCAGCTGACGTCGTTGGCGG
GTGCTGGTGTGCAGAAGCTGAAGGACTTCTTCGTCGACGACATTGTCCCC
GCATTCATCGCTCTGATTCGCACGATACAGGAACCCATCTTAGAATTCGT
AGGGAAGACAACCACTTTCATCTGGAAATTCATGACGAAGCTCGGTGGGA
GTGTCGCCGCCCTCTTCAAGACGGCATTCCAGGCCATCACCAAGATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:218597..219943+

>mRNA_P-littoralis_Contig15.93.1 ID=mRNA_P-littoralis_Contig15.93.1|Name=mRNA_P-littoralis_Contig15.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1335bp|location=Sequence derived from alignment at P-littoralis_Contig15:218597..219943+ (Pylaiella littoralis U1_48)
ATGGACAACATATGGGAGTTCACTTCCGACGATCTTCCGCAGATCATCAC
CGATTTCATCTCCACCATGAAGGAGATGATCCTGGGCCTGAAAGAAAAGA
TGGCCGAGAAGATAGCCCAGATCATCCAGTTCCTGCGGGACAAGGTGGAC
CTTTTTGTTTCAAAGATAAAAGGCGTCGCAGTCGAATCGTACGAGTCGTT
CCTGGAACGAGTGGTCAACCCCGTGGTGAAGTTCTTCGTAAACAACTTGA
TTAACCCCACGCTTCTGATCTTCACAAAGATCAAGGAGTTTCACGAGCTG
GTCTGGAAAACGCTGAGCGATGCCGTGGACAAGTTCACGGGTCTGAAGGT
TTTCGATTTCGCCACCGAGATCGTCGACGTCTTCCAGAAGATCCCGGAGG
TGTTTGACAGCATGAAGGAGTCTATCGTCAAACTCATCAACAAGCTGAAG
AGGGGCGTCATCGGCAGCCTGAACCAGGGCATCAACTCGAGCTCCGCGTT
CGTCGAAGAGAGAGCCAACGGCGTCTTGTGCGACACCAACAAGGTCATTC
AGAGCTCGGAGCGCTTGATCAACCGGATAACGGACGGTCTCAACGGATCC
ATGAACAAGGTCGAGAACAAGATCAACGATGTGACGAAAACGATGGGGGG
TGTTGTCAACAAAGCCGTCGACACCGTAAACGCGGTGACCCGTACCCTTA
CGAAGATCAGGAATGCGAAAATTGATATTAAAGTCAAGAAAATCAAACCA
TTTGGTTTTGTCCCAGAGATCAGGGGTATTCGACGAGTCAGCATCCCGTC
GCTCGACGTTCCCGACATCCCCGAGGCCCAGTTCGGCGAGATCAAGACCA
TCGTGGAGATACCGGACGTCGATATCAAGGGCCCGGACGACTTGACCGTA
GACGACATCGGCATCGACGTCAGCATCCCCGGCTTTGGCTTCATCACGGA
CAGAATCGCACAGATCAAGGCCAGCGTCCACAACATTTTCAACAGCGCCA
TGGAGCCTCTGTACAGCGGGGCGTCGGCCCTGATGGCGCTCGTCTCCACC
ATCATCGCCAGCGCGACACAGCTGTTCCACGACTACCTGTCGTGGACGGC
GATCAAGGACCACATCTCGCAGCTGACGTCGTTGGCGGGTGCTGGTGTGC
AGAAGCTGAAGGACTTCTTCGTCGACGACATTGTCCCCGCATTCATCGCT
CTGATTCGCACGATACAGGAACCCATCTTAGAATTCGTAGGGAAGACAAC
CACTTTCATCTGGAAATTCATGACGAAGCTCGGTGGGAGTGTCGCCGCCC
TCTTCAAGACGGCATTCCAGGCCATCACCAAGATC
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