mRNA_P-littoralis_Contig15.92.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI) HSP 1 Score: 526 bits (1354), Expect = 2.990e-185 Identity = 254/257 (98.83%), Postives = 256/257 (99.61%), Query Frame = 1
Query: 1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWR 771
MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGY+TRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLR VRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGT+PFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWR
Sbjct: 1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYVTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRCVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTRPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWR 257
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI) HSP 1 Score: 513 bits (1320), Expect = 3.720e-180 Identity = 247/257 (96.11%), Postives = 250/257 (97.28%), Query Frame = 1
Query: 1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWR 771
MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKI+AFKGT+ FFNSC TEA CLILG+ ARLLKYFI GKTYVCLTND SLSRRDIK MYASRWR
Sbjct: 1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWR 257
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K) HSP 1 Score: 454 bits (1167), Expect = 1.420e-156 Identity = 216/257 (84.05%), Postives = 234/257 (91.05%), Query Frame = 1
Query: 1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWR 771
M PMSPEIYDAFKKCD QWMQRRRK+DTSSLFYTLT+CC+Q RGV H+L+ME+E YSSQA+HSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFI AGY TRTN++PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AAT MLR V+KGDTL+FDRGYYSK+LL SVH SHAFGVWRLKI+AF+GT+ FFNSC TEATCLILGV+ARLLKYFI GKTYVCLT D SLSR IK MYASRWR
Sbjct: 1 MACPMSPEIYDAFKKCDQQWMQRRRKMDTSSLFYTLTRCCVQGRGVNHVLKMEDEAYSSQAVHSARKKLPMGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINAGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVQKGDTLLFDRGYYSKDLLHSVHGSHAFGVWRLKIDAFRGTRSFFNSCRTEATCLILGVKARLLKYFIDGKTYVCLTTDPSLSRLKIKTMYASRWR 257
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE) HSP 1 Score: 440 bits (1131), Expect = 4.700e-146 Identity = 206/246 (83.74%), Postives = 229/246 (93.09%), Query Frame = 1
Query: 34 AFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWR 771
+++KCD QW+QRRRK+DTSSLF+TLT+CC+Q RGV+H+L+ME+E YSSQA+HSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFI +GY TRTN++PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AAT MLR VRKGDTL+FDRGYYSK+LLRSVHDSHAFGVWRLKI+AFKGT+ FFNSC TEA CLILG+ ARLLKYFI GKTYVCLTND SLSRRDIK MYASRWR
Sbjct: 27 SYQKCDQQWIQRRRKMDTSSLFFTLTRCCVQGRGVSHVLKMEDEAYSSQAVHSARKKLPIGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINSGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVRKGDTLLFDRGYYSKDLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWR 272
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE) HSP 1 Score: 417 bits (1071), Expect = 1.670e-136 Identity = 207/285 (72.63%), Postives = 231/285 (81.05%), Query Frame = 1
Query: 1 MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRWRNPSND*NQTSNLR---KHMPKLRLFI 846
MT+P+SPEIYDAFKKCD QWMQRRRKLDTSS+FYT+TKCC +ERGV+H+L+ME E+YSSQA+H ARKKLP GAFKEVNRFL RGPHEPR+FA+DGSKVHVHPSFI AGY TRTN+KPVPRPAKRPLVMLSSMVDV+TK+C+DFELTKHF+ER+AA MLR VRK DTL+FDRGYYSK+LLRSVHDS AFGVWRL+I CLILGVR RLLKYFI GKTYVCLTND SLSRRDIK MYA WRWR + SNL+ H L+I
Sbjct: 1 MTRPISPEIYDAFKKCDAQWMQRRRKLDTSSVFYTITKCCTRERGVSHVLKMEAEEYSSQAVHLARKKLPIGAFKEVNRFLHRGPHEPRIFAIDGSKVHVHPSFIKAGYKTRTNDKPVPRPAKRPLVMLSSMVDVRTKSCIDFELTKHFDERRAAVSMLRSVRKSDTLLFDRGYYSKDLLRSVHDSGAFGVWRLRI----------------MPCLILGVRVRLLKYFIKGKTYVCLTNDPSLSRRDIKTMYA--WRWRVEESFKRLKSNLKLEKAHAKTPALYI 267
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE) HSP 1 Score: 303 bits (775), Expect = 2.110e-99 Identity = 156/206 (75.73%), Postives = 167/206 (81.07%), Query Frame = 1
Query: 154 MENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWR 771
M NEQYSSQAIH ARKKLP GAFKEVNRFL +GPHEPRVFAVDGSKVHVHPSFIGAGY TRTN+KPVPRPAK PLVMLSSMVDVKTKACVDFELTKHFNE + R Y K LRS+HDS AFGVWRLKINAFKGTK F +S TE TCLILGV++RL+KY I+GKTYVCLTND +LSRRDIK +YASRWR
Sbjct: 1 MGNEQYSSQAIHLARKKLPVGAFKEVNRFLHQGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKSPLVMLSSMVDVKTKACVDFELTKHFNEDGS-----------------RIYTQK--LRSIHDSQAFGVWRLKINAFKGTKSFISSWRTETTCLILGVQSRLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWR 187
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE) HSP 1 Score: 164 bits (416), Expect = 7.040e-44 Identity = 96/172 (55.81%), Postives = 105/172 (61.05%), Query Frame = 1
Query: 52 GQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAF 567
G +QRRRK+DTSSLFYTLTK CIQERGV HILR ++EQYSSQA+HSARKKLP GAFKE PVPRPA RPLVMLSSMVD TK FNERKA MLR V +GDTLVFD+ YYS+ LLR+VHDS AF
Sbjct: 172 GDEIQRRRKIDTSSLFYTLTKRCIQERGVGHILRTDDEQYSSQAVHSARKKLPAGAFKE----------------------------------------PVPRPATRPLVMLSSMVD-----------TKLFNERKADVSMLRSVHQGDTLVFDKEYYSRGLLRNVHDSKAF 292
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: A0A2Z2NHE4_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NHE4_9GAMM) HSP 1 Score: 95.9 bits (237), Expect = 7.430e-18 Identity = 81/287 (28.22%), Postives = 128/287 (44.60%), Query Frame = 1
Query: 49 DGQWMQRRRKLD--------------TSSLFYTLTKCCIQERGVAHILRMENEQ---YSSQAIHSARKKLPPGAFKEVN-RFLQRGPHEP-------RVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLIL-------------------GVRARLLKYFISGKTYVC---LTNDLSLSRRDIKVMYASRW 768
D QW +R+R L+ T+ Y +T + E+ L ++ Q ++ A +AR KL FK + + LQ+ +P R+ AVDGSK+++ I AGY T ++N A P +S + ++KTK +DF+L H +ERK A L + + D +V+DRGYYS ++L H ++RLK A + + F NS +A I + RL+KY G +Y+ L + S + +Y SRW
Sbjct: 342 DRQWQKRQRVLNSLLIMLFIFRLVFSTNKQGYAITTAELWEQ--CRTLGIDLPQPTPVAASAFCNARAKLDEEVFKLLQVQILQQAKPDPKKLWQGHRLMAVDGSKLNLPRQLIRAGYKTPSDN------AHYPQGTVSCLYELKTKIPIDFDLASHRDERKMAISHLNSLSETDVVVYDRGYYSYDMLHEHDKRHIHPIFRLKTTACRVVEAFANSDDIDAVVQIFPSQSKRTSIPAHDPQPDYPALALRLVKYDAGGTSYILGTTLWDQKKYSIEQLSAVYHSRW 620
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: A0A6L8GJ11_9BACT (IS4 family transposase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8GJ11_9BACT) HSP 1 Score: 80.9 bits (198), Expect = 6.800e-13 Identity = 65/219 (29.68%), Postives = 107/219 (48.86%), Query Frame = 1
Query: 49 DGQWMQRRRKLDTSSLFYTLTKCCI--QERGVAHILRM-------------ENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEP------RVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRP-AKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEA 639
D +WM+RRR L++ + + + + +E+G A + + E + +I AR+++ F +++R + R + RVFAVDG+K+++ + AGY P+P+ A P ++S + + TK VDF L+ ER AA L + GD +VFDRGY+S LL +V + A V+RL+ N + F TEA
Sbjct: 342 DRRWMKRRRVLNSLIVMLFVFRLVLSRREKGYATVTAELWEQCRKLGIALPQREPVVASSICKARQRVHEELFLDLHREILRHGGDGARWKGRRVFAVDGTKMNLPRGLVDAGY-------PLPKDGAHYPQGLVSCLYRLDTKVPVDFSLSARACERTAALGHLHALEAGDVVVFDRGYFSFELLHAVIRTGAHPVFRLQANGVAAFRDFMAGDGTEA 553
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Match: A0A658K6S8_PSEA0 (IS4 family transposase n=3 Tax=Pseudomonas amygdali TaxID=47877 RepID=A0A658K6S8_PSEA0) HSP 1 Score: 77.8 bits (190), Expect = 4.080e-12 Identity = 58/186 (31.18%), Postives = 89/186 (47.85%), Query Frame = 1
Query: 61 MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPR---------VFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKR--PLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLK 585
+ R R+ SSL C ++G+A + + ++ AR+KLP FK +N L H R VFA+DGSK++ + GY T PR R P M+S + +++ + DFEL H +ER+ E L + +GD ++FDRGY+S +L V S V+RL+
Sbjct: 16 LSRTRQGYGSSLGVLWESCA--DKGIA---LPRTDAVAPSSLCEARQKLPEAVFKTLNDELISLWHAHRDTPTWKGHRVFAIDGSKINAPRGLLEYGYKT-------PRETTRHYPCAMMSGLYNLQEQLIYDFELVPHNDERRCVPEHLAKLERGDLVIFDRGYFSYQILHEVLASGQHAVFRLQ 189 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig15.92.1 >prot_P-littoralis_Contig15.92.1 ID=prot_P-littoralis_Contig15.92.1|Name=mRNA_P-littoralis_Contig15.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=265bp MTKPMSPEIYDAFKKCDGQWMQRRRKLDTSSLFYTLTKCCIQERGVAHILback to top mRNA from alignment at P-littoralis_Contig15:206940..208042- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig15.92.1 ID=mRNA_P-littoralis_Contig15.92.1|Name=mRNA_P-littoralis_Contig15.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1103bp|location=Sequence derived from alignment at P-littoralis_Contig15:206940..208042- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig15:206940..208042- >mRNA_P-littoralis_Contig15.92.1 ID=mRNA_P-littoralis_Contig15.92.1|Name=mRNA_P-littoralis_Contig15.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig15:206940..208042- (Pylaiella littoralis U1_48)back to top |