mRNA_P-littoralis_Contig15.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.88.1
Unique NamemRNA_P-littoralis_Contig15.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.88.1 vs. uniprot
Match: Q8QNM4_ESV1K (EsV-1-40 n=2 Tax=root TaxID=1 RepID=Q8QNM4_ESV1K)

HSP 1 Score: 687 bits (1772), Expect = 6.610e-245
Identity = 333/492 (67.68%), Postives = 401/492 (81.50%), Query Frame = 1
Query:   19 ISQNLLGHVSRWQTETIEALRLNNSAFFDMAWLFQGVYFKDSRHVYASRSDYFTCLFRNDMRKGTDVFEGVTAFRVSDPMSKKHIFDMMRIFCHTGIVQVDKGESILKTMERYSAFHYYGIRGGMEVIRQLAMDVINPTNAVQALEYAMSSPECL---ESPNDTGLLSDIKNYIAIYAFVVFKHKSFYSLASENLGGLAQICTRDDLNIREIDLLHCIYRLCERKIGTDRDLQELGSAWEVMTHDFDESGS-LWSQVRLSSITMREFVKFIKENKNCFSSDNVVKIITFLYSCAET------DGESSRHDEDMGVHANADXXXXXXKKKRKPFRPISFYPRNLEFHGLASPQTDISFWDDSKIKLFFAFDSAKKEAAALPPVHFHNFFVHCSVFHADKSINVAGNIHGKS-VGGACEQVTITSSVVNFRHDRWRKKAVVSPLTGGTAFRITNILSWNTIGNNDTPGYLFDIEQYPEYSPNGSWILLCICIER 1461
            ISQNLLG+VSRWQ ETIEAL+ NN+ FFDMAWLF GVY++D + +Y+SRSDYF CLF + MRKGT+ FEGVTA+ VS PMSK+HIFDMMR+FCHTG+VQVDKGE ILKTMERYSAFHYY ++GGM VIRQL MDVINPTNA+QALEYAMSS  C    +  ++ GLLSDI++YI+IYAFVVFKHKSFY+L ++++ G++QIC RDDLNI+EIDLL C+Y+LCE+K+  D     LGSAW +MT D  E GS LWS++RLSSI+MREFVKFIKENK CFSSDN +KIITFLYSCA+          +S +DE +GVH +         KKRK F+PISFYPRNLEFHGLASPQTDIS+WDDSKIKLF AFD + KEA  LPPVHFH+ F+HC+V+HAD+S+NV+GNIHGK+        +T+T+SVVNFRHDRWRKK V++ L+ GTAF+I  ILS NTI NNDT GYLFDIE+YPEYSP G+WIL+ +CIE+
Sbjct:    5 ISQNLLGYVSRWQLETIEALQANNADFFDMAWLFDGVYYRDCKQLYSSRSDYFKCLFSSSMRKGTEEFEGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYSLQGGMNVIRQLVMDVINPTNAIQALEYAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSIPGVSQICARDDLNIKEIDLLQCVYKLCEKKVSADNKPGGLGSAWALMTDDAAERGSSLWSKIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADAAAADTPPSSASANDEVVGVHLS---------KKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHSVFIHCTVYHADRSLNVSGNIHGKTNKSDPSVNITVTASVVNFRHDRWRKKNVLASLSSGTAFKIPTILSSNTIANNDTHGYLFDIERYPEYSPKGTWILMSLCIEK 487          
BLAST of mRNA_P-littoralis_Contig15.88.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 2.920e-103
Identity = 160/228 (70.18%), Postives = 191/228 (83.77%), Query Frame = 1
Query:   61 ETIEALRLNNSAFFDMAWLFQGVYFKDSRHVYASRSDYFTCLFRNDMRKGTDVFEGVTAFRVSDPMSKKHIFDMMRIFCHTGIVQVDKGESILKTMERYSAFHYYGIRGGMEVIRQLAMDVINPTNAVQALEYAMSSPECL-ESPNDTGLLSDIKNYIAIYAFVVFKHKSFYSLASENLGGLAQICTRDDLNIREIDLLHCIYRLCERKIGTDRDLQELGSAWEVMTH 741
            ETIE L+ NNS  FDMAW+FQGV++ D RH  +SRSDYF CLF NDMRKGT+ FEGV A +VSDP+SK+HIFDMMR+FC+TGIVQVDKGE ILKTMERYSAFHYY +RGGM+VIRQL MDVINP+NA+QALEYAM+S  C  E  +D GLLSDI +YIAIYA VVFKHKSFY+L  E++ G++QIC RDDLNIREIDLL C+++LCE++I  D+D   L SAWE++ H
Sbjct:  416 ETIETLKCNNSDSFDMAWMFQGVFYNDCRH--SSRSDYFKCLFLNDMRKGTEKFEGVKANKVSDPISKRHIFDMMRVFCYTGIVQVDKGEPILKTMERYSAFHYYSLRGGMDVIRQLVMDVINPSNAIQALEYAMNSVVCSGEDGSDRGLLSDISDYIAIYALVVFKHKSFYALGFESIPGISQICARDDLNIREIDLLQCVFKLCEKRIHADKDGHGLRSAWELILH 641          
BLAST of mRNA_P-littoralis_Contig15.88.1 vs. uniprot
Match: B5LWK4_9PHYC (Putative transcription regulator n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK4_9PHYC)

HSP 1 Score: 284 bits (726), Expect = 2.680e-87
Identity = 170/483 (35.20%), Postives = 265/483 (54.87%), Query Frame = 1
Query:   25 QNLLGHVSRWQTETIEALRLNNSAFFDMAWLFQG--VYFKDSRHVYASRSDYFTCLFRNDMRKGTDVFEGVTAFRVSDPMSKKHIFDMMRIFCHTGIVQVDKGESILKTMERYSAFHYYGIRGGMEVIRQLAMDVINPTNAVQALEYAMSSPECLESPNDTGLLSDIKNYIAIYAFVVFKHKSFYSLASENLGGLAQICTRDDLNIREIDLLHCIYRLCERKIGTDRDLQELGSAWEVMTH-DFDESG-SLWSQVRLSSITMREFVKFIKENKNCFSSDNVVKIITFLYSCAETDGESSRHDEDMGVHANADXXXXXXKKKRKPFRPISFYPRNLEFHGLASPQTDISFWDDSKIKLFFAFDSAKKEAAALPPVHFHNFFVHCSVFHADKSINVAGN-IHGKSVGGACEQVTITSSVVNFRHDRWRKKAVVSPLTGGTAFRITNILSWNTIGNNDTPGYLFDIEQYPEYSPNGSWILLCICIE 1458
            Q L   V  WQ   I  L  +   + DM W       Y +D R  Y   S +   LF   + KG    + V  +R+S+   K HIF M+R+FCHTG+V+  K ++IL+T+ERY+AF +YGI  G   +++L +D + P+N++ A EYA+          D GLL DI  YI  YAF+VF+ KSF  +  E+L  L  +C  D LN+ EIDLL  + RLCE+K+  +++  E  S + ++TH ++  SG SL+  +RLSS++M EF+    ++    ++D +V+++  ++     +G S                     KKRK F+ +S YPRNL FH + SPQ ++S+    K+   + F    K+  +LP ++F ++ +  +V + DK + ++G  I  K    A   + IT+S+VNFRHDRW+K         G+ F+I NILS N I  +   GYLFD+ +YP++S  GS ++L +  E
Sbjct:    8 QYLCEAVDGWQRNRIVELENDALQYTDMVWKLDDGETYLRDCRSAYTC-SSFMRTLFETTVGKGEKSRDEVPMYRLSE---KSHIFAMIRVFCHTGLVRFGKSDTILRTIERYAAFQFYGIEIGSATLKRLVLDSLGPSNSMVAFEYAVHR-------QDRGLLQDIVAYIRNYAFLVFRQKSFLGIRRESLAELVHLCDSDSLNVPEIDLLSHLIRLCEKKLD-EKEFTEFDSPFAILTHREWGTSGKSLFDALRLSSLSMEEFMSLALKHPGAMNNDQIVQVMRAIH---RPEGSS---------------------KKRKKFQIVSAYPRNLTFHPVESPQMEVSYCQRDKVLAHYVFQFLPKKDVSLPTLNFGSYQIRITVVYRDKVLGISGQAISPKQESRA--DLRITASMVNFRHDRWKKSTTA---LSGSVFQIPNILSCNAIEGSS--GYLFDVAEYPDFSDGGSCLMLSLACE 447          
BLAST of mRNA_P-littoralis_Contig15.88.1 vs. uniprot
Match: Q6XM46_9PHYC (FirrV-1-A41 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM46_9PHYC)

HSP 1 Score: 263 bits (671), Expect = 1.180e-78
Identity = 168/496 (33.87%), Postives = 259/496 (52.22%), Query Frame = 1
Query:   31 LLGHVSRWQTETIEALRLNNSAFFDMAWLFQGV--YFKDSRHVYASRSDYFTCLFRNDMRKGTDVFEGVTAFRVSDPMSKKHIFDMMRIFCHTGIVQVDKGESILKTMERYSAFHYYGIRGGMEVIRQLAMDVINPTNAVQALEYAMSSPECLESPNDTGLLSDIKNYIAIYAFVVFKHKSFYSLASENLGGLAQICTRDDLNIREIDLLHCIYRLCERKIGTDRDLQELGSAWEVMTHDFDESG-SLWSQVRLSSITMREFVKFIKENKNCFSSDNVVKIITFLYSCAETDGESSRHDEDMGVHANADXXXXXXKKKRKPFRPISFYPRNLEFHGLA-SPQTDISFWDDSKIKLFFAFD---SAKKEAAALPPVHFHNFFVHCSVFHADKSINVAGNIH---GKSVGGACE---------QVTITSSVVNFRHDRWRKKAVVSPLTGGTA----FRITNILSWNTIGNN-DTP-GYLFDIEQYPEYSPNGSWILL 1443
            L G V  WQ   I  L  N   + DMAW   G     +D R V+   S + T  F+  +       +G+  + +S+   K  IF M+RIFCHTG++  DK +SIL TMERY+AF +YGI  G   +++  ++ + P+N+V A EYA+         +D  LL++IK Y++ YAF+VF+ KSF  +  E+   L  +C  D+LN++EIDL  C++RLCE+K  +++   E  SA+ +MTH   +   SL+  +RL SITM E + F+ ++    ++D +V+I+                     +H   D      + KRK F+ +S YPR L F+ +  +PQ D+S     K+   F F       K   ALPP+ F  + VH ++ + D++I + G IH   G  +  +           ++ +   ++NFRH+RW+K +V   ++        FRI NILS N I  +  TP GYLFD+  YPEYS   +  LL
Sbjct:    7 LCGAVEEWQQHRIRDLLDNTLQYPDMAWKLNGEDDSIRDCR-VFYECSTFLTNYFQTSVGTAKTNADGLPLYTLSE---KPAIFSMIRIFCHTGLMCFDKTDSILTTMERYAAFQFYGIEMGSATLKRHVLESLTPSNSVLAFEYAVHR-------HDDSLLAEIKAYMSHYAFIVFRQKSFLGIGKESFHQLVSLCDSDNLNMKEIDLFSCLFRLCEKK-NSEKGFAEFDSAFSIMTHTRSQGEKSLYDTLRLHSITMEEVMSFVHKHPAALNNDQIVQIM-------------------REIHQPGD------RPKRKKFQAVSSYPRYLNFNAVVGNPQVDVSHRQTGKMMAHFVFPFTPGRTKSDVALPPIAFGAYQVHANMVYTDRTIGITGQIHATEGTGINSSSXXXXXXXXNTKIRVVCYIINFRHERWKKSSVCLDVSNTLYQYLDFRIPNILSCNAIERSCGTPTGYLFDVTCYPEYSEQDAASLL 465          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNM4_ESV1K6.610e-24567.68EsV-1-40 n=2 Tax=root TaxID=1 RepID=Q8QNM4_ESV1K[more]
A0A6H5KJD3_9PHAE2.920e-10370.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWK4_9PHYC2.680e-8735.20Putative transcription regulator n=1 Tax=Feldmanni... [more]
Q6XM46_9PHYC1.180e-7833.87FirrV-1-A41 n=1 Tax=Feldmannia irregularis virus a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:196151..197614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1464
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-40 BTB/POZ-like domain
Ec32 orthologEc-06_006390.1
Cds size1464
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789712.131779-CDS-P-littoralis_Contig15:196150..1976141680789712.131779-CDS-P-littoralis_Contig15:196150..197614Pylaiella littoralis U1_48CDSP-littoralis_Contig15 196151..197614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.88.1prot_P-littoralis_Contig15.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 196151..197614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.88.1

>prot_P-littoralis_Contig15.88.1 ID=prot_P-littoralis_Contig15.88.1|Name=mRNA_P-littoralis_Contig15.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=488bp
MDKTIKISQNLLGHVSRWQTETIEALRLNNSAFFDMAWLFQGVYFKDSRH
VYASRSDYFTCLFRNDMRKGTDVFEGVTAFRVSDPMSKKHIFDMMRIFCH
TGIVQVDKGESILKTMERYSAFHYYGIRGGMEVIRQLAMDVINPTNAVQA
LEYAMSSPECLESPNDTGLLSDIKNYIAIYAFVVFKHKSFYSLASENLGG
LAQICTRDDLNIREIDLLHCIYRLCERKIGTDRDLQELGSAWEVMTHDFD
ESGSLWSQVRLSSITMREFVKFIKENKNCFSSDNVVKIITFLYSCAETDG
ESSRHDEDMGVHANADANADANKKKRKPFRPISFYPRNLEFHGLASPQTD
ISFWDDSKIKLFFAFDSAKKEAAALPPVHFHNFFVHCSVFHADKSINVAG
NIHGKSVGGACEQVTITSSVVNFRHDRWRKKAVVSPLTGGTAFRITNILS
WNTIGNNDTPGYLFDIEQYPEYSPNGSWILLCICIER*
back to top

mRNA from alignment at P-littoralis_Contig15:196151..197614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.88.1 ID=mRNA_P-littoralis_Contig15.88.1|Name=mRNA_P-littoralis_Contig15.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1464bp|location=Sequence derived from alignment at P-littoralis_Contig15:196151..197614+ (Pylaiella littoralis U1_48)
ATGGATAAAACAATAAAAATATCCCAGAACCTCCTCGGGCACGTGTCGCG GTGGCAAACGGAAACCATCGAGGCGCTACGACTCAACAACTCGGCCTTTT TCGACATGGCCTGGCTGTTTCAGGGAGTCTACTTCAAAGACAGTCGCCAC GTCTACGCCTCGCGGTCCGACTACTTCACGTGTCTCTTCCGGAACGACAT GCGGAAGGGCACGGACGTGTTCGAAGGGGTGACGGCGTTCAGAGTCTCCG ACCCGATGTCCAAGAAACACATATTTGACATGATGAGAATTTTCTGCCAC ACCGGCATCGTTCAGGTCGACAAGGGCGAATCGATCCTCAAGACCATGGA AAGATACTCGGCGTTCCACTACTACGGCATCCGCGGAGGCATGGAAGTCA TCAGGCAGCTGGCCATGGATGTCATCAATCCGACCAATGCCGTGCAGGCG CTGGAGTACGCCATGAGCTCTCCGGAGTGTCTGGAGAGTCCGAACGACAC GGGGCTCCTTTCGGACATCAAGAACTACATCGCGATCTACGCCTTCGTCG TGTTCAAGCACAAGAGCTTCTACTCGCTGGCTTCGGAGAATCTCGGGGGC CTGGCGCAGATCTGCACCCGGGACGACCTGAATATCCGGGAGATCGACCT GCTGCACTGCATCTACAGGCTGTGCGAGAGGAAAATCGGCACCGACAGGG ATCTGCAGGAGCTGGGATCCGCGTGGGAAGTCATGACGCACGACTTCGAC GAGTCCGGATCGCTGTGGAGCCAGGTCCGTCTCTCCAGCATCACCATGCG CGAGTTCGTCAAGTTTATCAAGGAGAACAAGAACTGCTTCTCCAGCGACA ACGTTGTCAAGATCATCACCTTTCTCTACTCGTGCGCGGAAACGGACGGA GAGTCGAGCCGCCACGACGAAGACATGGGCGTTCACGCAAACGCAGACGC AAACGCAGACGCAAACAAGAAGAAGAGGAAGCCTTTCCGGCCCATCTCTT TCTACCCGAGAAACCTCGAGTTCCACGGCCTGGCCTCGCCGCAGACGGAT ATCTCGTTCTGGGACGACTCGAAGATCAAGCTGTTTTTCGCGTTCGACTC TGCCAAAAAAGAGGCCGCGGCCCTTCCCCCGGTGCACTTCCACAACTTCT TCGTCCACTGCTCCGTGTTCCACGCGGATAAATCCATCAACGTGGCCGGC AACATCCACGGGAAGTCCGTCGGCGGCGCCTGTGAGCAAGTCACCATCAC GTCTTCCGTGGTCAACTTCCGGCACGATCGATGGAGGAAGAAGGCCGTCG TCTCGCCGCTGACCGGTGGCACCGCCTTTCGAATCACAAACATCTTGTCG TGGAACACCATCGGCAACAATGACACGCCCGGGTACCTGTTCGACATCGA GCAGTACCCCGAGTACTCCCCCAACGGATCGTGGATCCTCCTGTGTATCT GCATCGAACGATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig15:196151..197614+

>mRNA_P-littoralis_Contig15.88.1 ID=mRNA_P-littoralis_Contig15.88.1|Name=mRNA_P-littoralis_Contig15.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1464bp|location=Sequence derived from alignment at P-littoralis_Contig15:196151..197614+ (Pylaiella littoralis U1_48)
ATGGATAAAACAATAAAAATATCCCAGAACCTCCTCGGGCACGTGTCGCG
GTGGCAAACGGAAACCATCGAGGCGCTACGACTCAACAACTCGGCCTTTT
TCGACATGGCCTGGCTGTTTCAGGGAGTCTACTTCAAAGACAGTCGCCAC
GTCTACGCCTCGCGGTCCGACTACTTCACGTGTCTCTTCCGGAACGACAT
GCGGAAGGGCACGGACGTGTTCGAAGGGGTGACGGCGTTCAGAGTCTCCG
ACCCGATGTCCAAGAAACACATATTTGACATGATGAGAATTTTCTGCCAC
ACCGGCATCGTTCAGGTCGACAAGGGCGAATCGATCCTCAAGACCATGGA
AAGATACTCGGCGTTCCACTACTACGGCATCCGCGGAGGCATGGAAGTCA
TCAGGCAGCTGGCCATGGATGTCATCAATCCGACCAATGCCGTGCAGGCG
CTGGAGTACGCCATGAGCTCTCCGGAGTGTCTGGAGAGTCCGAACGACAC
GGGGCTCCTTTCGGACATCAAGAACTACATCGCGATCTACGCCTTCGTCG
TGTTCAAGCACAAGAGCTTCTACTCGCTGGCTTCGGAGAATCTCGGGGGC
CTGGCGCAGATCTGCACCCGGGACGACCTGAATATCCGGGAGATCGACCT
GCTGCACTGCATCTACAGGCTGTGCGAGAGGAAAATCGGCACCGACAGGG
ATCTGCAGGAGCTGGGATCCGCGTGGGAAGTCATGACGCACGACTTCGAC
GAGTCCGGATCGCTGTGGAGCCAGGTCCGTCTCTCCAGCATCACCATGCG
CGAGTTCGTCAAGTTTATCAAGGAGAACAAGAACTGCTTCTCCAGCGACA
ACGTTGTCAAGATCATCACCTTTCTCTACTCGTGCGCGGAAACGGACGGA
GAGTCGAGCCGCCACGACGAAGACATGGGCGTTCACGCAAACGCAGACGC
AAACGCAGACGCAAACAAGAAGAAGAGGAAGCCTTTCCGGCCCATCTCTT
TCTACCCGAGAAACCTCGAGTTCCACGGCCTGGCCTCGCCGCAGACGGAT
ATCTCGTTCTGGGACGACTCGAAGATCAAGCTGTTTTTCGCGTTCGACTC
TGCCAAAAAAGAGGCCGCGGCCCTTCCCCCGGTGCACTTCCACAACTTCT
TCGTCCACTGCTCCGTGTTCCACGCGGATAAATCCATCAACGTGGCCGGC
AACATCCACGGGAAGTCCGTCGGCGGCGCCTGTGAGCAAGTCACCATCAC
GTCTTCCGTGGTCAACTTCCGGCACGATCGATGGAGGAAGAAGGCCGTCG
TCTCGCCGCTGACCGGTGGCACCGCCTTTCGAATCACAAACATCTTGTCG
TGGAACACCATCGGCAACAATGACACGCCCGGGTACCTGTTCGACATCGA
GCAGTACCCCGAGTACTCCCCCAACGGATCGTGGATCCTCCTGTGTATCT
GCATCGAACGATGA
back to top