mRNA_P-littoralis_Contig15.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.87.1
Unique NamemRNA_P-littoralis_Contig15.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.87.1 vs. uniprot
Match: Q8QKW0_ESV1K (EsV-1-47 n=2 Tax=root TaxID=1 RepID=Q8QKW0_ESV1K)

HSP 1 Score: 160 bits (404), Expect = 5.560e-49
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 MPSSVNEINSAFNRRLVPIAHVGASRPVNPFASTGTQTSRTKREEMKVRSSVALPGTLGTQYQGKVVDAKNDDAVRLDTYTVRENPNASTTKHTTSRLLVEHTRER 318
            MPS+V+EIN+AFN+RL P+  +GA+RPVNPFASTG QTSRTKR+EM VRSSV LPGTLG QY+GKV D KNDD+VRLDTYT+ ENP  + T H+TSRL VEHTRER
Sbjct:    1 MPSAVHEINTAFNQRLKPVTGLGAARPVNPFASTGVQTSRTKRDEMTVRSSVTLPGTLGAQYKGKVFDTKNDDSVRLDTYTIAENPKRNITMHSTSRLKVEHTRER 106
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BLAST of mRNA_P-littoralis_Contig15.87.1 vs. uniprot
Match: B5LWF6_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF6_9PHYC)

HSP 1 Score: 75.1 bits (183), Expect = 2.840e-15
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    7 SSVNEINSAFNRRLVPIAHVGASRPVNPFASTGTQTSRTKREEMKVRSSVALPGTLGTQYQGKVVDAK-NDDAVRLDTYTVRENPNASTTKHTTSRLLVEHTRER 318
            S+V++I++ F  RL       + RPVNPFA   + T ++      ++S V+    LGT+YQGK+V+    D  + L++Y+VR+NP A    HTT+R+ VEHTRE+
Sbjct:   12 SAVHDIDAKFLDRLSRPDKAHSLRPVNPFARISSPTLKSIVSGDALKSEVSATAKLGTEYQGKIVEKSIGDGGLYLESYSVRDNPQAGKKIHTTNRMTVEHTREK 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QKW0_ESV1K5.560e-4973.58EsV-1-47 n=2 Tax=root TaxID=1 RepID=Q8QKW0_ESV1K[more]
B5LWF6_9PHYC2.840e-1540.00Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:195203..195523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size321
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-47
Ec32 orthologEc-06_006320.1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789712.0991986-CDS-P-littoralis_Contig15:195202..1955231680789712.0991986-CDS-P-littoralis_Contig15:195202..195523Pylaiella littoralis U1_48CDSP-littoralis_Contig15 195203..195523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.87.1prot_P-littoralis_Contig15.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 195203..195523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.87.1

>prot_P-littoralis_Contig15.87.1 ID=prot_P-littoralis_Contig15.87.1|Name=mRNA_P-littoralis_Contig15.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
MPSSVNEINSAFNRRLVPIAHVGASRPVNPFASTGTQTSRTKREEMKVRS
SVALPGTLGTQYQGKVVDAKNDDAVRLDTYTVRENPNASTTKHTTSRLLV
EHTRER*
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mRNA from alignment at P-littoralis_Contig15:195203..195523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.87.1 ID=mRNA_P-littoralis_Contig15.87.1|Name=mRNA_P-littoralis_Contig15.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig15:195203..195523+ (Pylaiella littoralis U1_48)
ATGCCTTCATCTGTAAACGAGATCAACTCCGCGTTCAACCGGCGCCTCGT
GCCGATCGCTCACGTCGGAGCCTCGAGGCCCGTGAACCCATTCGCGTCGA
CGGGAACGCAAACGTCGCGCACAAAGCGAGAGGAGATGAAAGTCAGGTCG
TCCGTGGCTCTCCCCGGGACTCTAGGCACACAGTACCAGGGAAAGGTCGT
CGACGCAAAGAATGACGACGCCGTCCGGTTGGACACGTACACCGTCCGGG
AAAACCCGAATGCTAGCACCACGAAGCACACAACCTCGCGGCTCCTGGTC
GAACACACCAGGGAACGCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:195203..195523+

>mRNA_P-littoralis_Contig15.87.1 ID=mRNA_P-littoralis_Contig15.87.1|Name=mRNA_P-littoralis_Contig15.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig15:195203..195523+ (Pylaiella littoralis U1_48)
ATGCCTTCATCTGTAAACGAGATCAACTCCGCGTTCAACCGGCGCCTCGT
GCCGATCGCTCACGTCGGAGCCTCGAGGCCCGTGAACCCATTCGCGTCGA
CGGGAACGCAAACGTCGCGCACAAAGCGAGAGGAGATGAAAGTCAGGTCG
TCCGTGGCTCTCCCCGGGACTCTAGGCACACAGTACCAGGGAAAGGTCGT
CGACGCAAAGAATGACGACGCCGTCCGGTTGGACACGTACACCGTCCGGG
AAAACCCGAATGCTAGCACCACGAAGCACACAACCTCGCGGCTCCTGGTC
GAACACACCAGGGAACGCTGA
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