mRNA_P-littoralis_Contig15.86.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.86.1
Unique NamemRNA_P-littoralis_Contig15.86.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.86.1 vs. uniprot
Match: Q8QNL9_ESV1K (EsV-1-46 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNL9_ESV1K)

HSP 1 Score: 115 bits (289), Expect = 1.260e-30
Identity = 78/149 (52.35%), Postives = 90/149 (60.40%), Query Frame = 1 
Query:    1 MFEPNLSVDVSLLAIVLGLYATNSDRNLVLILVCCLFAHISLTNDDFRGDGRGGALGAAAEAAAGDDGG-----VVDA-----------EPSNRRTVDHYDTTVSSDVLGRQLSTPQTG------------PNGNLASARNSFFESLVS 363
            MFEPNLS+DVSLLAI+LGLYAT +DRNL+L+L+C LFAH+ LTNDD   D   G L  A  AAA +DG      V DA           E  N    D + +T+SS V  RQLSTPQT              NG LASAR+SFFESLVS
Sbjct:    7 MFEPNLSIDVSLLAIILGLYATKNDRNLILVLICALFAHVLLTNDD--DDLSAGVLEHARTAAAANDGAGLGAAVSDAAATAETPTAVAENENAVATDGFKSTLSSGVFDRQLSTPQTKLTSTVFPSTSEEANGKLASARDSFFESLVS 153
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BLAST of mRNA_P-littoralis_Contig15.86.1 vs. uniprot
Match: D8LP79_ECTSI (EsV-1-46 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP79_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 5.320e-28
Identity = 72/147 (48.98%), Postives = 90/147 (61.22%), Query Frame = 1 
Query:    1 MFEPNLSVDVSLLAIVLGLYATNSDRNLVLILVCCLFAHISLTNDDFRGDGRGGALGAAAEAAAGDDG---GVVD-----------AEPSNRRTVDHYDTTVSSDVLGRQLSTPQTG------------PNGNLASARNSFFESLVS 363
            MFEPNL++DVSLLAI+LGLYAT +DRNL+L+L+C LFAH+ LTND  + D   G L  A+ AA  +DG    V D           A+  +    D + +TVSS V  RQLS+PQT              NG LASAR+SFF+SLVS
Sbjct:    1 MFEPNLAIDVSLLAIILGLYATKNDRNLILVLICALFAHVLLTND--KDDSNAGVLQNASTAAVTNDGLGAAVTDVVATAVTPTTVAKNESPVAPDGFKSTVSSGVFYRQLSSPQTNLTSTVFPSTSKEANGKLASARDSFFKSLVS 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNL9_ESV1K1.260e-3052.35EsV-1-46 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP79_ECTSI5.320e-2848.98EsV-1-46 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:194695..195153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size366
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionEsV-1-46
Ec32 orthologEc-06_006330.1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789712.0536845-CDS-P-littoralis_Contig15:194694..1948411680789712.0536845-CDS-P-littoralis_Contig15:194694..194841Pylaiella littoralis U1_48CDSP-littoralis_Contig15 194695..194841 +
1680789712.070227-CDS-P-littoralis_Contig15:194934..1951531680789712.070227-CDS-P-littoralis_Contig15:194934..195153Pylaiella littoralis U1_48CDSP-littoralis_Contig15 194935..195153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.86.1prot_P-littoralis_Contig15.86.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 194695..195153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.86.1

>prot_P-littoralis_Contig15.86.1 ID=prot_P-littoralis_Contig15.86.1|Name=mRNA_P-littoralis_Contig15.86.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
MFEPNLSVDVSLLAIVLGLYATNSDRNLVLILVCCLFAHISLTNDDFRGD
GRGGALGAAAEAAAGDDGGVVDAEPSNRRTVDHYDTTVSSDVLGRQLSTP
QTGPNGNLASARNSFFESLVS*
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mRNA from alignment at P-littoralis_Contig15:194695..195153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.86.1 ID=mRNA_P-littoralis_Contig15.86.1|Name=mRNA_P-littoralis_Contig15.86.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig15:194695..195153+ (Pylaiella littoralis U1_48)
ATGTTCGAGCCTAACCTTTCCGTAGATGTCAGCCTTCTTGCCATCGTACT
TGGCCTGTACGCCACCAACAGCGACAGGAACCTCGTGCTGATTCTGGTCT
GCTGTCTTTTTGCACACATATCGCTAACCAATGATGACTTCCGTGGCGTC
GGTGACTACGCCGAGGGTGGCGGCCGGGGTGGCCAGGACGGCCGGGGTGG
CCAGGACGGCCGGGGTGGCCAGGACGGCCGGGGTGGCCAGGACGGCCGGG
GTGGCGCGCTCGGCGCCGCCGCCGAGGCCGCCGCCGGGGATGACGGCGGC
GTCGTCGATGCCGAGCCTAGTAATAGAAGAACTGTCGACCATTACGACAC
CACGGTGTCGTCGGATGTGTTGGGCCGACAGCTGAGTACGCCACAGACGG
GCCCGAACGGTAATCTGGCATCCGCTCGCAATTCCTTCTTCGAGTCGCTC
GTTTCGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:194695..195153+

>mRNA_P-littoralis_Contig15.86.1 ID=mRNA_P-littoralis_Contig15.86.1|Name=mRNA_P-littoralis_Contig15.86.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig15:194695..195153+ (Pylaiella littoralis U1_48)
ATGTTCGAGCCTAACCTTTCCGTAGATGTCAGCCTTCTTGCCATCGTACT
TGGCCTGTACGCCACCAACAGCGACAGGAACCTCGTGCTGATTCTGGTCT
GCTGTCTTTTTGCACACATATCGCTAACCAATGATGACTTCCGTGGCGAC
GGCCGGGGTGGCGCGCTCGGCGCCGCCGCCGAGGCCGCCGCCGGGGATGA
CGGCGGCGTCGTCGATGCCGAGCCTAGTAATAGAAGAACTGTCGACCATT
ACGACACCACGGTGTCGTCGGATGTGTTGGGCCGACAGCTGAGTACGCCA
CAGACGGGCCCGAACGGTAATCTGGCATCCGCTCGCAATTCCTTCTTCGA
GTCGCTCGTTTCGTGA
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