mRNA_P-littoralis_Contig15.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.74.1
Unique NamemRNA_P-littoralis_Contig15.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.74.1 vs. uniprot
Match: Q9J3U3_ESV1K (EsV-1-58 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q9J3U3_ESV1K)

HSP 1 Score: 417 bits (1073), Expect = 6.560e-140
Identity = 218/364 (59.89%), Postives = 267/364 (73.35%), Query Frame = 1 
Query:    1 LGMMAGLLPAALKITEHKQMNDIAERYYAKYIEDFNNKYGFKKEEVQELVKEFEEVTEEICKLIPDEEMRNMYRKYILSYPTMFLSMIPAEALQTKLAVKCVNDNKGLREKVEDMSKCVSSLVKNLTELQIKAGIPPIVNLMFESMPDPLTAMTDPMYHKYNAAIMTYHKLLADNTKTT------DPDDPSETITVGDLLRTQPLTCVNELLRTKTGG-----YDIRSRNG----EWEK----VTRQDLEDLGRVMQNMKTQSGCQPFGDEWNHTGPTPPMNPAMCLADGENIQPGNPRHDTGRTNLYRARREKNGQAHWTHVGNVPALAADGN-QMVQHEPPPVQNAGMWDGAGYTPGVDNRP 1032
            +GMMAG+LPAALKI EHK M  +AERYY KYI+DFN KYGF + +++ELV+EF EVT+EI +LIPD +M+ MY KYI SYPTM+LSMIPAEALQTKLAVKCV+DNK LR K+E MS  VSSLV+NLT+LQI AGIPPIVNLMFESMPDPLTAMTDPMY KYN AI+TYHKLL D    T      DP  P+      + LR +P+  +++L    + G     + I++  G    + +K    VT  +++DL  V++NM+TQSGCQPFG+EWNHTGPTPPMNPAMCL     +QPGNPRH+ GRTNLY A+R+ NG A+W   G VPA++  G  QMVQH+P P+Q    W G  +TPGVD RP
Sbjct:   62 MGMMAGILPAALKIQEHKDMQQVAERYYEKYIKDFNRKYGFSEPQIKELVEEFNEVTDEIKRLIPDAKMKEMYAKYIESYPTMYLSMIPAEALQTKLAVKCVSDNKALRTKIETMSSAVSSLVRNLTDLQISAGIPPIVNLMFESMPDPLTAMTDPMYQKYNDAIVTYHKLLQDEQPHTFAFARIDPASPAPASNT-EFLRLEPVQYLDKLAEHMSSGAGAGPHAIKNSAGTPVQDADKKDLVVTPDEVQDLATVLKNMQTQSGCQPFGEEWNHTGPTPPMNPAMCLDHENRLQPGNPRHNVGRTNLYMAKRDPNGNAYWVQTGQVPAVSNGGGPQMVQHQPQPMQQPDPWAGQRHTPGVDPRP 424
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BLAST of mRNA_P-littoralis_Contig15.74.1 vs. uniprot
Match: D8LP91_ECTSI (EsV-1-58 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP91_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 1.030e-139
Identity = 219/367 (59.67%), Postives = 264/367 (71.93%), Query Frame = 1 
Query:    1 LGMMAGLLPAALKITEHKQMNDIAERYYAKYIEDFNNKYGFKKEEVQELVKEFEEVTEEICKLIPDEEMRNMYRKYILSYPTMFLSMIPAEALQTKLAVKCVNDNKGLREKVEDMSKCVSSLVKNLTELQIKAGIPPIVNLMFESMPDPLTAMTDPMYHKYNAAIMTYHKLLADNTKTTDPD---DPSETITVG----DLLRTQPLTCVNELLR------TKTGGYDI--RSRNGEWE-------KVTRQDLEDLGRVMQNMKTQSGCQPFGDEWNHTGPTPPMNPAMCLADGENIQPGNPRHDTGRTNLYRARREKNGQAHWTHVGNVPALAADGN-QMVQHEPPPVQNAGMWDGAGYTPGVDNRP 1032
            +GMMAG+LPAALKI EHK M  +AERYY KYI+DFN KYGF  E++  LV+EF +VT EI +LIPD++MR MY KYI SYPTM+LSMIPAEALQTKLAVKCV+DNK LREK+E MS  VSSLV+NLT+LQI AGIPPIVNLMFESMPDPLTAMTDPMY KYN AI+TYHKLL D    T+     D +  I  G    + LR +P+  + +L        T  G Y I   +R+   +       +V+ ++++DL  V++NM+TQSGCQPFG+EWNHTGPTPPMNPAMCL +    QPGNPRH+ GRTNLY A+R+ NG A W   G VPAL+  G  QMVQH+P P+Q    W G  + PGVD RP
Sbjct:    1 MGMMAGILPAALKIQEHKDMQKVAERYYEKYIKDFNRKYGFSPEQINALVEEFNDVTNEIKRLIPDDKMREMYAKYIESYPTMYLSMIPAEALQTKLAVKCVSDNKALREKIESMSSAVSSLVRNLTDLQISAGIPPIVNLMFESMPDPLTAMTDPMYQKYNDAIVTYHKLLQDEQPHTNGFARVDTNAAIPAGWSNTEFLRQEPVNYLEKLADHISTTGTAPGSYAILDNARSPVMKSDGITPLEVSPEEVKDLATVLKNMQTQSGCQPFGEEWNHTGPTPPMNPAMCLGNEHKFQPGNPRHNVGRTNLYMAKRDPNGNAQWVQTGQVPALSNGGGPQMVQHQPQPMQQPDPWAGQNHMPGVDPRP 367
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q9J3U3_ESV1K6.560e-14059.89EsV-1-58 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP91_ECTSI1.030e-13959.67EsV-1-58 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:181520..182944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1224
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-58
Ec32 orthologEc-06_006210.1
Cds size1218
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.6807244-CDS-P-littoralis_Contig15:181519..1816421680789711.6807244-CDS-P-littoralis_Contig15:181519..181642Pylaiella littoralis U1_48CDSP-littoralis_Contig15 181520..181642 -
1680789711.6910534-CDS-P-littoralis_Contig15:181843..1829381680789711.6910534-CDS-P-littoralis_Contig15:181843..182938Pylaiella littoralis U1_48CDSP-littoralis_Contig15 181844..182938 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.7087302-UTR-P-littoralis_Contig15:182938..1829441680789711.7087302-UTR-P-littoralis_Contig15:182938..182944Pylaiella littoralis U1_48UTRP-littoralis_Contig15 182939..182944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.74.1prot_P-littoralis_Contig15.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 181520..182938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.74.1

>prot_P-littoralis_Contig15.74.1 ID=prot_P-littoralis_Contig15.74.1|Name=mRNA_P-littoralis_Contig15.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=406bp
MMAGLLPAALKITEHKQMNDIAERYYAKYIEDFNNKYGFKKEEVQELVKE
FEEVTEEICKLIPDEEMRNMYRKYILSYPTMFLSMIPAEALQTKLAVKCV
NDNKGLREKVEDMSKCVSSLVKNLTELQIKAGIPPIVNLMFESMPDPLTA
MTDPMYHKYNAAIMTYHKLLADNTKTTDPDDPSETITVGDLLRTQPLTCV
NELLRTKTGGYDIRSRNGEWEKVTRQDLEDLGRVMQNMKTQSGCQPFGDE
WNHTGPTPPMNPAMCLADGENIQPGNPRHDTGRTNLYRARREKNGQAHWT
HVGNVPALAADGNQMVQHEPPPVQNAGMWDGAGYTPGVDNRPPPPPPPQQ
MQMQTQRAPTQQQMQGSKGSKGSKGSKGSKGSKGSKGSKGSKGSKGSKGS
KGSKK*
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mRNA from alignment at P-littoralis_Contig15:181520..182944-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.74.1 ID=mRNA_P-littoralis_Contig15.74.1|Name=mRNA_P-littoralis_Contig15.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1425bp|location=Sequence derived from alignment at P-littoralis_Contig15:181520..182944- (Pylaiella littoralis U1_48)
TTGGGGATGATGGCCGGACTCCTCCCCGCTGCGCTAAAAATCACGGAGCA
CAAGCAAATGAACGATATTGCCGAACGATACTACGCCAAGTACATTGAAG
ATTTCAACAACAAGTATGGATTCAAGAAGGAAGAAGTCCAAGAACTGGTG
AAAGAGTTTGAGGAAGTGACGGAGGAAATCTGCAAGCTTATCCCTGACGA
GGAAATGAGGAACATGTACAGGAAGTACATTCTGTCATACCCAACCATGT
TCCTGAGCATGATTCCAGCGGAAGCCCTTCAGACGAAACTCGCGGTGAAA
TGCGTAAATGACAACAAGGGCCTCCGGGAGAAGGTCGAGGATATGTCGAA
GTGCGTGTCGTCCCTCGTCAAGAACCTCACCGAACTCCAAATCAAGGCCG
GGATCCCGCCGATCGTGAACCTGATGTTCGAGAGCATGCCGGACCCGCTG
ACGGCGATGACCGATCCCATGTACCACAAGTATAATGCGGCTATCATGAC
GTACCACAAGCTCCTCGCCGACAACACAAAGACCACGGATCCTGATGACC
CATCCGAAACCATTACGGTGGGCGATCTGCTCCGAACGCAGCCCCTTACA
TGCGTCAACGAATTGCTACGTACTAAGACAGGAGGATACGACATACGGTC
AAGAAACGGTGAATGGGAGAAAGTCACAAGGCAAGACCTGGAGGATTTGG
GAAGGGTCATGCAAAACATGAAGACCCAATCGGGATGCCAGCCGTTCGGC
GACGAGTGGAACCATACCGGCCCAACCCCCCCGATGAATCCCGCCATGTG
TCTCGCGGATGGAGAGAACATCCAGCCCGGGAACCCCCGTCACGACACCG
GGCGTACGAATCTGTACCGCGCCAGGCGCGAAAAGAATGGGCAGGCCCAC
TGGACGCATGTCGGCAACGTCCCGGCTCTGGCGGCGGACGGGAACCAGAT
GGTTCAGCACGAACCCCCTCCCGTTCAGAACGCAGGCATGTGGGACGGGG
CGGGCTACACTCCCGGCGTGGACAACCGGCCGCCGCCGCCGCCGCCGCCG
CAACAGATGCAGATGCAGACGCAGCGCGCTCCGACGCAGCAGCAGATGCA
GGTGCAGCGCGCTCCGACGCAGCAGCAGATGCAGATGCAGCGCGCTCCGA
CACAGCAGCAGGCCCAGCAGGCCCAGATCTACCAAGACCCTCGATCGTTC
GCGCAGCCGTGGAGCGGGCAGGTCGCCCCTGTCCGTTCCGGGGGGTCAAC
CGGAGCCACGAGCGGGTCCAAGGGGGCCAAAAAAGCCAATAGTGGATCGA
AGGGGTCCAAGGGGTCCAAGGGGTCCAAGGGGTCCAAGGGGTCCAAGGGG
TCCAAGGGGTCCAAGGGGTCCAAGGGGTCCAAGGGGTCCAAGGGGTCCAA
GGGGTCCAAGGGGTCCAAGAAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:181520..182944-

>mRNA_P-littoralis_Contig15.74.1 ID=mRNA_P-littoralis_Contig15.74.1|Name=mRNA_P-littoralis_Contig15.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1218bp|location=Sequence derived from alignment at P-littoralis_Contig15:181520..182944- (Pylaiella littoralis U1_48)
ATGATGGCCGGACTCCTCCCCGCTGCGCTAAAAATCACGGAGCACAAGCA
AATGAACGATATTGCCGAACGATACTACGCCAAGTACATTGAAGATTTCA
ACAACAAGTATGGATTCAAGAAGGAAGAAGTCCAAGAACTGGTGAAAGAG
TTTGAGGAAGTGACGGAGGAAATCTGCAAGCTTATCCCTGACGAGGAAAT
GAGGAACATGTACAGGAAGTACATTCTGTCATACCCAACCATGTTCCTGA
GCATGATTCCAGCGGAAGCCCTTCAGACGAAACTCGCGGTGAAATGCGTA
AATGACAACAAGGGCCTCCGGGAGAAGGTCGAGGATATGTCGAAGTGCGT
GTCGTCCCTCGTCAAGAACCTCACCGAACTCCAAATCAAGGCCGGGATCC
CGCCGATCGTGAACCTGATGTTCGAGAGCATGCCGGACCCGCTGACGGCG
ATGACCGATCCCATGTACCACAAGTATAATGCGGCTATCATGACGTACCA
CAAGCTCCTCGCCGACAACACAAAGACCACGGATCCTGATGACCCATCCG
AAACCATTACGGTGGGCGATCTGCTCCGAACGCAGCCCCTTACATGCGTC
AACGAATTGCTACGTACTAAGACAGGAGGATACGACATACGGTCAAGAAA
CGGTGAATGGGAGAAAGTCACAAGGCAAGACCTGGAGGATTTGGGAAGGG
TCATGCAAAACATGAAGACCCAATCGGGATGCCAGCCGTTCGGCGACGAG
TGGAACCATACCGGCCCAACCCCCCCGATGAATCCCGCCATGTGTCTCGC
GGATGGAGAGAACATCCAGCCCGGGAACCCCCGTCACGACACCGGGCGTA
CGAATCTGTACCGCGCCAGGCGCGAAAAGAATGGGCAGGCCCACTGGACG
CATGTCGGCAACGTCCCGGCTCTGGCGGCGGACGGGAACCAGATGGTTCA
GCACGAACCCCCTCCCGTTCAGAACGCAGGCATGTGGGACGGGGCGGGCT
ACACTCCCGGCGTGGACAACCGGCCGCCGCCGCCGCCGCCGCCGCAACAG
ATGCAGATGCAGACGCAGCGCGCTCCGACGCAGCAGCAGATGCAGGGGTC
CAAGGGGTCCAAGGGGTCCAAGGGGTCCAAGGGGTCCAAGGGGTCCAAGG
GGTCCAAGGGGTCCAAGGGGTCCAAGGGGTCCAAGGGGTCCAAGGGGTCC
AAGGGGTCCAAGAAATGA
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