mRNA_P-littoralis_Contig15.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.73.1
Unique NamemRNA_P-littoralis_Contig15.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.73.1 vs. uniprot
Match: D8LP93_ECTSI (EsV-1-60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP93_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.980e-52
Identity = 106/161 (65.84%), Postives = 127/161 (78.88%), Query Frame = 1 
Query:    1 MLQLIVENKIASIGAAAMATGVVLLLSAATVDTGPTDDDEGGT-QVSRTNKKRTLLAVGGSMMSVGVLASVYDQYTRRMSPGTISSSSLLRPSSQMSPRELRDFQDRVSTAAAKLRRSLAETDRATKGGRGDGVLGGRKESAAELAARASAQISSFIRNYS 480
            ML L+ ENK+ASIGAAAM TGVVLLLSA+ VDT  T+ D+G T Q++  NKK+TLLA+GGS++S+GVLA VYDQYTR  SPG+  SSS  R SS+MSP+EL  FQDRVS AAAKLRRS+A+T   +   R  G+    +ESAAELAARASAQISSFI+NYS
Sbjct:    1 MLSLLTENKLASIGAAAMVTGVVLLLSASAVDTEATESDDGSTEQLANANKKKTLLALGGSILSLGVLAQVYDQYTRYTSPGSSFSSSQYRSSSEMSPQELSRFQDRVSAAAAKLRRSMAQTSNQSV--RSSGL---EEESAAELAARASAQISSFIQNYS 156
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BLAST of mRNA_P-littoralis_Contig15.73.1 vs. uniprot
Match: Q8QKV8_ESV1K (EsV-1-60 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV8_ESV1K)

HSP 1 Score: 165 bits (418), Expect = 1.610e-49
Identity = 104/161 (64.60%), Postives = 126/161 (78.26%), Query Frame = 1 
Query:    1 MLQLIVENKIASIGAAAMATGVVLLLSAATVDTGPTDDDEGGT-QVSRTNKKRTLLAVGGSMMSVGVLASVYDQYTRRMSPGTISSSSLLRPSSQMSPRELRDFQDRVSTAAAKLRRSLAETDRATKGGRGDGVLGGRKESAAELAARASAQISSFIRNYS 480
            ML+L+ ENK+ASIGAAAM TGVVLLLSA+ VDT   ++D+G T Q++   KK+TLLA+GGS++S+GVLA VYDQYTR  S G   SSS  R SS+MSP+EL  FQDRVS AAAKLRRS+A+T    +G R  G+    +ESAAELAARASAQISSFI+NYS
Sbjct:    1 MLRLLTENKLASIGAAAMVTGVVLLLSASAVDTEAIENDDGTTVQLANVTKKKTLLALGGSVLSLGVLAQVYDQYTRYTSVGRSLSSSQYRSSSEMSPQELSRFQDRVSAAAAKLRRSIAQTS--DEGMRSSGL---EQESAAELAARASAQISSFIQNYS 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP93_ECTSI2.980e-5265.84EsV-1-60 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QKV8_ESV1K1.610e-4964.60EsV-1-60 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:180487..180969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionEsV-1-60
Ec32 orthologEc-06_006190.1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.6516767-CDS-P-littoralis_Contig15:180486..1809691680789711.6516767-CDS-P-littoralis_Contig15:180486..180969Pylaiella littoralis U1_48CDSP-littoralis_Contig15 180487..180969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.73.1prot_P-littoralis_Contig15.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 180487..180969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.73.1

>prot_P-littoralis_Contig15.73.1 ID=prot_P-littoralis_Contig15.73.1|Name=mRNA_P-littoralis_Contig15.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
MLQLIVENKIASIGAAAMATGVVLLLSAATVDTGPTDDDEGGTQVSRTNK
KRTLLAVGGSMMSVGVLASVYDQYTRRMSPGTISSSSLLRPSSQMSPREL
RDFQDRVSTAAAKLRRSLAETDRATKGGRGDGVLGGRKESAAELAARASA
QISSFIRNYS*
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mRNA from alignment at P-littoralis_Contig15:180487..180969-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.73.1 ID=mRNA_P-littoralis_Contig15.73.1|Name=mRNA_P-littoralis_Contig15.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig15:180487..180969- (Pylaiella littoralis U1_48)
ATGTTGCAACTCATCGTTGAAAACAAGATCGCGAGCATCGGTGCGGCAGC
GATGGCCACCGGTGTCGTGCTGTTGCTGTCCGCAGCGACCGTCGACACGG
GACCCACGGACGACGACGAGGGGGGCACACAGGTATCCAGAACGAACAAA
AAGAGGACTCTCTTGGCTGTCGGTGGGTCGATGATGTCTGTTGGCGTTCT
TGCCTCGGTTTACGACCAGTACACCCGGAGGATGTCACCGGGCACCATCT
CCTCCTCTTCGCTCCTGAGACCCTCGTCTCAAATGTCGCCGAGGGAACTT
CGCGATTTCCAGGATCGGGTGTCGACGGCGGCGGCAAAGCTTAGAAGAAG
CCTCGCGGAAACAGACCGCGCGACGAAGGGGGGCCGCGGGGACGGTGTTC
TTGGCGGGAGGAAAGAGTCTGCGGCCGAGCTAGCGGCGCGCGCAAGCGCA
CAGATCAGTTCGTTCATCAGAAATTACTCGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:180487..180969-

>mRNA_P-littoralis_Contig15.73.1 ID=mRNA_P-littoralis_Contig15.73.1|Name=mRNA_P-littoralis_Contig15.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig15:180487..180969- (Pylaiella littoralis U1_48)
ATGTTGCAACTCATCGTTGAAAACAAGATCGCGAGCATCGGTGCGGCAGC
GATGGCCACCGGTGTCGTGCTGTTGCTGTCCGCAGCGACCGTCGACACGG
GACCCACGGACGACGACGAGGGGGGCACACAGGTATCCAGAACGAACAAA
AAGAGGACTCTCTTGGCTGTCGGTGGGTCGATGATGTCTGTTGGCGTTCT
TGCCTCGGTTTACGACCAGTACACCCGGAGGATGTCACCGGGCACCATCT
CCTCCTCTTCGCTCCTGAGACCCTCGTCTCAAATGTCGCCGAGGGAACTT
CGCGATTTCCAGGATCGGGTGTCGACGGCGGCGGCAAAGCTTAGAAGAAG
CCTCGCGGAAACAGACCGCGCGACGAAGGGGGGCCGCGGGGACGGTGTTC
TTGGCGGGAGGAAAGAGTCTGCGGCCGAGCTAGCGGCGCGCGCAAGCGCA
CAGATCAGTTCGTTCATCAGAAATTACTCGTGA
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