mRNA_P-littoralis_Contig15.72.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.72.1
Unique NamemRNA_P-littoralis_Contig15.72.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.72.1 vs. uniprot
Match: Q8QNL0_ESV1K (EsV-1-61 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNL0_ESV1K)

HSP 1 Score: 93.2 bits (230), Expect = 4.670e-23
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   67 GPRFRSSDDEWLSENENEVLDMWHEIEDSIKRRGIVMLDKCRFNHFCTFVMSLTTTHKGRVI 252
            G  FR SDD W SENE+E+LD+WH ++D IK RGIVMLDKCRFNHFC FV+S+TTT++   I
Sbjct:   28 GVTFRHSDDTWYSENEDELLDIWHAVQDIIKSRGIVMLDKCRFNHFCAFVVSMTTTNRDNCI 89
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BLAST of mRNA_P-littoralis_Contig15.72.1 vs. uniprot
Match: D8LP94_ECTSI (EsV-1-61 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP94_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.420e-23
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   49 PKTRSVGPRFRSSDDEWLSENENEVLDMWHEIEDSIKRRGIVMLDKCRFNHFCTFVMSLTTTHKGRVI 252
            P  +  G  FR SDD W SENE+++LD+WH ++D IK RGIVMLDKCRFNHFC FV+S+TTT +   I
Sbjct:   22 PPVKPQGVTFRHSDDTWYSENEDDLLDIWHTLQDIIKSRGIVMLDKCRFNHFCAFVVSMTTTPRDNCI 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNL0_ESV1K4.670e-2366.13EsV-1-61 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP94_ECTSI9.420e-2360.29EsV-1-61 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:180172..180429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size258
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-61
Ec32 orthologEc-06_006180.1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.6219733-CDS-P-littoralis_Contig15:180171..1804291680789711.6219733-CDS-P-littoralis_Contig15:180171..180429Pylaiella littoralis U1_48CDSP-littoralis_Contig15 180172..180429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.72.1prot_P-littoralis_Contig15.72.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 180172..180429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.72.1

>prot_P-littoralis_Contig15.72.1 ID=prot_P-littoralis_Contig15.72.1|Name=mRNA_P-littoralis_Contig15.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MVTPTPSPRSPPPPPLPKTRSVGPRFRSSDDEWLSENENEVLDMWHEIED
SIKRRGIVMLDKCRFNHFCTFVMSLTTTHKGRVIE*
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mRNA from alignment at P-littoralis_Contig15:180172..180429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.72.1 ID=mRNA_P-littoralis_Contig15.72.1|Name=mRNA_P-littoralis_Contig15.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig15:180172..180429- (Pylaiella littoralis U1_48)
ATGGTTACACCAACTCCATCCCCGCGTTCTCCGCCACCACCACCACTACC
AAAGACCAGATCGGTCGGTCCTCGGTTCAGAAGCTCAGACGACGAATGGT
TGTCGGAGAACGAAAACGAGGTACTAGATATGTGGCACGAGATTGAAGAC
AGTATCAAACGCAGAGGGATCGTCATGCTTGATAAGTGTCGGTTCAATCA
CTTTTGCACCTTTGTCATGTCACTGACGACGACACACAAGGGTCGGGTGA
TTGAGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:180172..180429-

>mRNA_P-littoralis_Contig15.72.1 ID=mRNA_P-littoralis_Contig15.72.1|Name=mRNA_P-littoralis_Contig15.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig15:180172..180429- (Pylaiella littoralis U1_48)
ATGGTTACACCAACTCCATCCCCGCGTTCTCCGCCACCACCACCACTACC
AAAGACCAGATCGGTCGGTCCTCGGTTCAGAAGCTCAGACGACGAATGGT
TGTCGGAGAACGAAAACGAGGTACTAGATATGTGGCACGAGATTGAAGAC
AGTATCAAACGCAGAGGGATCGTCATGCTTGATAAGTGTCGGTTCAATCA
CTTTTGCACCTTTGTCATGTCACTGACGACGACACACAAGGGTCGGGTGA
TTGAGTAA
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