mRNA_P-littoralis_Contig15.68.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.68.1
Unique NamemRNA_P-littoralis_Contig15.68.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.68.1 vs. uniprot
Match: Q8QKV6_ESV1K (EsV-1-67 n=2 Tax=root TaxID=1 RepID=Q8QKV6_ESV1K)

HSP 1 Score: 220 bits (560), Expect = 3.810e-72
Identity = 107/122 (87.70%), Postives = 118/122 (96.72%), Query Frame = 1 
Query:    1 MDRMNQRSAMAYWKLATIVIVFIGATSYLSVRTHESSKLPRGHILKYSELLREAARASIQSTQDQHPVQSFINSSKAMCAVSIVADFLTPHQVKHIMNIDIAEMKEFISKQHDDATSALIES 366
            MDRMNQRSAMAYWKL+TIV+VF+G TSYLSVR HESSKLPR HILKYSELLREAARASIQSTQDQHPVQSFI+SSKAMCAV+IV++FLTPHQVKHIMN+DI EMKEFISKQHDDATSAL+++
Sbjct:    1 MDRMNQRSAMAYWKLSTIVVVFVGVTSYLSVRAHESSKLPREHILKYSELLREAARASIQSTQDQHPVQSFIDSSKAMCAVNIVSEFLTPHQVKHIMNVDIGEMKEFISKQHDDATSALVQA 122
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BLAST of mRNA_P-littoralis_Contig15.68.1 vs. uniprot
Match: B5LWC8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC8_9PHYC)

HSP 1 Score: 100 bits (250), Expect = 5.090e-25
Identity = 50/111 (45.05%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:   28 MAYWKLATIVIVFIGATSYLSVRTHESSKLPRGHILKYSELLREAARASIQSTQDQHPVQSFINSSKAMCAVSIVADFLTPHQVKHIMNIDIAEMKEFISKQHDDATSALI 360
            M YWK +  +++ + A S LS + +E+S+LPR H+LK +ELLR AA  S++++QD  P   F ++ +A   + +VA  LT  QV+HI NIDI E+KEFI+ QH  AT+ L+
Sbjct:    1 MTYWKASCTLLLTLAAVSALSRKCYETSRLPRRHVLKITELLRTAAEHSLRASQDSRPENVFHDTCQAKVNIDLVAQLLTREQVRHIANIDIDEIKEFIATQHLKATATLL 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QKV6_ESV1K3.810e-7287.70EsV-1-67 n=2 Tax=root TaxID=1 RepID=Q8QKV6_ESV1K[more]
B5LWC8_9PHYC5.090e-2545.05Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:170660..171043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size384
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionEsV-1-67
Ec32 orthologEc-06_006130.1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.4781466-CDS-P-littoralis_Contig15:170659..1710431680789711.4781466-CDS-P-littoralis_Contig15:170659..171043Pylaiella littoralis U1_48CDSP-littoralis_Contig15 170660..171043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.68.1prot_P-littoralis_Contig15.68.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 170660..171043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.68.1

>prot_P-littoralis_Contig15.68.1 ID=prot_P-littoralis_Contig15.68.1|Name=mRNA_P-littoralis_Contig15.68.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MDRMNQRSAMAYWKLATIVIVFIGATSYLSVRTHESSKLPRGHILKYSEL
LREAARASIQSTQDQHPVQSFINSSKAMCAVSIVADFLTPHQVKHIMNID
IAEMKEFISKQHDDATSALIESCRTLH*
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mRNA from alignment at P-littoralis_Contig15:170660..171043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.68.1 ID=mRNA_P-littoralis_Contig15.68.1|Name=mRNA_P-littoralis_Contig15.68.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig15:170660..171043+ (Pylaiella littoralis U1_48)
ATGGACCGCATGAACCAGCGTTCGGCGATGGCGTACTGGAAACTGGCAAC
GATCGTGATTGTTTTTATCGGGGCGACGTCGTACCTCTCGGTCAGGACGC
ACGAGAGCTCGAAGTTGCCGAGAGGGCACATCTTGAAGTACTCGGAGCTT
TTGAGGGAAGCCGCCCGTGCCAGCATACAGTCTACACAGGACCAACACCC
GGTTCAGAGTTTTATCAACAGTTCGAAAGCAATGTGTGCAGTGAGCATCG
TGGCCGACTTCCTGACACCGCACCAAGTCAAGCACATCATGAACATCGAC
ATCGCGGAGATGAAAGAGTTTATCTCAAAGCAGCACGACGACGCGACGAG
CGCGCTGATTGAAAGCTGTAGGACACTTCATTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:170660..171043+

>mRNA_P-littoralis_Contig15.68.1 ID=mRNA_P-littoralis_Contig15.68.1|Name=mRNA_P-littoralis_Contig15.68.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig15:170660..171043+ (Pylaiella littoralis U1_48)
ATGGACCGCATGAACCAGCGTTCGGCGATGGCGTACTGGAAACTGGCAAC
GATCGTGATTGTTTTTATCGGGGCGACGTCGTACCTCTCGGTCAGGACGC
ACGAGAGCTCGAAGTTGCCGAGAGGGCACATCTTGAAGTACTCGGAGCTT
TTGAGGGAAGCCGCCCGTGCCAGCATACAGTCTACACAGGACCAACACCC
GGTTCAGAGTTTTATCAACAGTTCGAAAGCAATGTGTGCAGTGAGCATCG
TGGCCGACTTCCTGACACCGCACCAAGTCAAGCACATCATGAACATCGAC
ATCGCGGAGATGAAAGAGTTTATCTCAAAGCAGCACGACGACGCGACGAG
CGCGCTGATTGAAAGCTGTAGGACACTTCATTAA
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