mRNA_P-littoralis_Contig15.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.65.1
Unique NamemRNA_P-littoralis_Contig15.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.65.1 vs. uniprot
Match: Q8QNK2_ESV1K (EsV-1-71 n=2 Tax=root TaxID=1 RepID=Q8QNK2_ESV1K)

HSP 1 Score: 321 bits (822), Expect = 3.160e-106
Identity = 173/319 (54.23%), Postives = 217/319 (68.03%), Query Frame = 1 
Query:   10 SNSQARDLTRYPTSISGDQIVKNIAQVGQSDGVDPVSLEHAYCGISRSGTVFSMASFRVVESGPNTNRGTLELHVYNSDGLSIPVLTIGEDGMTISGSLNVVGGNASFETTSIDTADKDIVLGSGATSLEEIDNGGIILGASGSGTRTLLYDSARDVWKTNIGVGIDAGAAFSVGEDAAVLDATGLTIGDA------------VSLTAMGLEMEHASLTPLGGLVVRNADSPEYXXXXXXXXXXXXXXEYAP----------TKSILTGDGLYLNNADSAVFLGETAWKIAYDSSSRHLLFKLYDTESDSYVTKAEISS 900
            S++ A DL++YP SISGDQIV+NI QV QSDG+D VSL+H + GIS+ G VFSMASFRVVESGPNTN GTLELHVYNSDG+S+P+LTIGEDG TI GSLNV GG+ S ETTS+   DKD++L SGATS++ +D GGIILG   SGT+ +LYD   D+WK+NIG+ +D GAAF+VG+   +LD TGLTIG              +SL   GL +   S+TPLGGLV+ + D  +               E             +  +L   GLYL N ++A++LG+T WKIAYDSSS+HLLF+ YD  S SYVTKAE  +
Sbjct:    2 SSAYATDLSQYPISISGDQIVQNIIQVAQSDGIDAVSLDHDFYGISQDGRVFSMASFRVVESGPNTNTGTLELHVYNSDGVSVPILTIGEDGTTIEGSLNVKGGHTSLETTSVVVEDKDMILASGATSVDHLDQGGIILGTDESGTKNMLYDLDGDMWKSNIGINVDTGAAFTVGDAQTILDGTGLTIGGVSLTEGSLQLAPDISLGTEGLAIGDISVTPLGGLVIGSPDGSDVDSTVVLDKSGLTIGEEINLGVDSGLSIGSNVLLDEQGLYLKNTEAALYLGQTGWKIAYDSSSQHLLFEFYDAGSSSYVTKAEFKA 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNK2_ESV1K3.160e-10654.23EsV-1-71 n=2 Tax=root TaxID=1 RepID=Q8QNK2_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:163950..164852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size903
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-71
Ec32 orthologEc-06_006090.1
Cds size903
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.367897-CDS-P-littoralis_Contig15:163949..1648521680789711.367897-CDS-P-littoralis_Contig15:163949..164852Pylaiella littoralis U1_48CDSP-littoralis_Contig15 163950..164852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.65.1prot_P-littoralis_Contig15.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 163950..164852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.65.1

>prot_P-littoralis_Contig15.65.1 ID=prot_P-littoralis_Contig15.65.1|Name=mRNA_P-littoralis_Contig15.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=301bp
MSSSNSQARDLTRYPTSISGDQIVKNIAQVGQSDGVDPVSLEHAYCGISR
SGTVFSMASFRVVESGPNTNRGTLELHVYNSDGLSIPVLTIGEDGMTISG
SLNVVGGNASFETTSIDTADKDIVLGSGATSLEEIDNGGIILGASGSGTR
TLLYDSARDVWKTNIGVGIDAGAAFSVGEDAAVLDATGLTIGDAVSLTAM
GLEMEHASLTPLGGLVVRNADSPEYDAVVVDASGVTIGDEYAPTKSILTG
DGLYLNNADSAVFLGETAWKIAYDSSSRHLLFKLYDTESDSYVTKAEISS
*
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mRNA from alignment at P-littoralis_Contig15:163950..164852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.65.1 ID=mRNA_P-littoralis_Contig15.65.1|Name=mRNA_P-littoralis_Contig15.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=903bp|location=Sequence derived from alignment at P-littoralis_Contig15:163950..164852- (Pylaiella littoralis U1_48)
ATGTCAAGCTCAAACTCGCAAGCCAGGGACCTCACGAGGTACCCCACGTC
GATCTCGGGGGATCAGATCGTGAAGAATATCGCCCAGGTCGGCCAGTCCG
ACGGAGTTGACCCCGTCTCCCTCGAGCATGCGTACTGTGGGATAAGCCGA
TCCGGAACAGTTTTCTCGATGGCATCCTTCCGGGTCGTCGAGTCCGGACC
CAACACGAACAGGGGAACCCTGGAGCTACACGTCTACAACTCGGACGGGC
TTTCGATCCCCGTCCTCACGATCGGAGAGGACGGCATGACGATCTCTGGG
TCGCTTAACGTGGTCGGTGGAAACGCGTCGTTCGAGACGACATCGATCGA
CACGGCCGACAAGGACATCGTCCTCGGGAGCGGAGCCACGTCCCTGGAAG
AAATAGACAATGGCGGTATCATTCTCGGGGCCTCCGGTTCTGGGACCAGG
ACCTTGCTCTACGACTCCGCCAGAGACGTGTGGAAAACAAACATTGGTGT
CGGCATCGACGCCGGCGCCGCGTTCTCCGTCGGCGAAGACGCGGCCGTCT
TGGATGCCACCGGGCTCACGATCGGGGACGCGGTCTCGCTCACCGCGATG
GGTCTGGAGATGGAACACGCCTCGCTGACCCCGCTTGGCGGTCTCGTTGT
CCGAAACGCGGACTCACCCGAATACGATGCCGTGGTCGTCGACGCATCGG
GTGTCACGATCGGTGACGAGTACGCTCCGACGAAATCGATCCTCACCGGC
GATGGCCTGTACCTCAACAACGCAGACTCGGCCGTCTTCCTCGGGGAAAC
GGCGTGGAAGATCGCGTACGACTCTTCTTCGCGACACCTCCTGTTCAAGC
TGTACGATACCGAGTCCGACTCGTACGTGACCAAAGCGGAAATCAGCTCG
TGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:163950..164852-

>mRNA_P-littoralis_Contig15.65.1 ID=mRNA_P-littoralis_Contig15.65.1|Name=mRNA_P-littoralis_Contig15.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=903bp|location=Sequence derived from alignment at P-littoralis_Contig15:163950..164852- (Pylaiella littoralis U1_48)
ATGTCAAGCTCAAACTCGCAAGCCAGGGACCTCACGAGGTACCCCACGTC
GATCTCGGGGGATCAGATCGTGAAGAATATCGCCCAGGTCGGCCAGTCCG
ACGGAGTTGACCCCGTCTCCCTCGAGCATGCGTACTGTGGGATAAGCCGA
TCCGGAACAGTTTTCTCGATGGCATCCTTCCGGGTCGTCGAGTCCGGACC
CAACACGAACAGGGGAACCCTGGAGCTACACGTCTACAACTCGGACGGGC
TTTCGATCCCCGTCCTCACGATCGGAGAGGACGGCATGACGATCTCTGGG
TCGCTTAACGTGGTCGGTGGAAACGCGTCGTTCGAGACGACATCGATCGA
CACGGCCGACAAGGACATCGTCCTCGGGAGCGGAGCCACGTCCCTGGAAG
AAATAGACAATGGCGGTATCATTCTCGGGGCCTCCGGTTCTGGGACCAGG
ACCTTGCTCTACGACTCCGCCAGAGACGTGTGGAAAACAAACATTGGTGT
CGGCATCGACGCCGGCGCCGCGTTCTCCGTCGGCGAAGACGCGGCCGTCT
TGGATGCCACCGGGCTCACGATCGGGGACGCGGTCTCGCTCACCGCGATG
GGTCTGGAGATGGAACACGCCTCGCTGACCCCGCTTGGCGGTCTCGTTGT
CCGAAACGCGGACTCACCCGAATACGATGCCGTGGTCGTCGACGCATCGG
GTGTCACGATCGGTGACGAGTACGCTCCGACGAAATCGATCCTCACCGGC
GATGGCCTGTACCTCAACAACGCAGACTCGGCCGTCTTCCTCGGGGAAAC
GGCGTGGAAGATCGCGTACGACTCTTCTTCGCGACACCTCCTGTTCAAGC
TGTACGATACCGAGTCCGACTCGTACGTGACCAAAGCGGAAATCAGCTCG
TGA
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