mRNA_P-littoralis_Contig15.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.64.1
Unique NamemRNA_P-littoralis_Contig15.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.64.1 vs. uniprot
Match: D8LPA4_ECTSI (EsV-1-72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA4_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 4.640e-108
Identity = 168/270 (62.22%), Postives = 206/270 (76.30%), Query Frame = 1 
Query:    1 MAHVAVGERVYVKDTDVFGDIARKRVLGVDAVSLVDDEGNTVAYFGAKIDSDIVNKETGLDGSGADVEVPVDVKEEGIEVLSAMNVSAEDQRLMFVKFMGMFDQETRRAYVADWKEKKGDPELRKTFLEGMMNDLDDDEAFIQEQGTRALAGVDEDVRRGMFEALVSTRTKEEREGMILEWMTVKGHPDAREEFLQKMYEILMDDDDYIAMEGKKAFTELRILEEDQAAIFAKFMAVTTVEDRAAYAANYRSARRSRSQKRLFLQKLIDL 810
            M+HV +GERVY+KD D+FGD+ R  VLGV+AVSLVDDEG T A+FGA  +S IV K+TG+DG+G  VEVP+DV+EEG +VL+AMN++ EDQRL F KFMGMFDQ TRRAY+ +W  KK D   R+TFL+ MM+ LDDDEAFI  QG +ALA VD  VR+ MF  +++T TK ERE +ILEWM+VK  PD +EEFLQ MYE+LMDDDDYIAMEG+KA T  RIL ++QA IF KFM   + EDR  YAA YR  R S S+K+  L  LI+L
Sbjct:    1 MSHVTLGERVYIKDADMFGDVERTTVLGVEAVSLVDDEGTTKAFFGANKESAIVKKDTGVDGTGVAVEVPIDVREEGADVLTAMNIAPEDQRLKFAKFMGMFDQATRRAYMDEWVAKKDDVAERETFLQNMMDALDDDEAFITNQGGQALADVDAGVRQYMFGRMLTTLTKAERESLILEWMSVKNSPDKKEEFLQGMYELLMDDDDYIAMEGRKALTRYRILADEQAEIFTKFMTTVSAEDRGKYAAEYRKVRTSASKKKKLLNSLINL 270
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BLAST of mRNA_P-littoralis_Contig15.64.1 vs. uniprot
Match: Q8QNK1_ESV1K (EsV-1-72 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNK1_ESV1K)

HSP 1 Score: 321 bits (822), Expect = 2.660e-107
Identity = 167/270 (61.85%), Postives = 208/270 (77.04%), Query Frame = 1 
Query:    1 MAHVAVGERVYVKDTDVFGDIARKRVLGVDAVSLVDDEGNTVAYFGAKIDSDIVNKETGLDGSGADVEVPVDVKEEGIEVLSAMNVSAEDQRLMFVKFMGMFDQETRRAYVADWKEKKGDPELRKTFLEGMMNDLDDDEAFIQEQGTRALAGVDEDVRRGMFEALVSTRTKEEREGMILEWMTVKGHPDAREEFLQKMYEILMDDDDYIAMEGKKAFTELRILEEDQAAIFAKFMAVTTVEDRAAYAANYRSARRSRSQKRLFLQKLIDL 810
            M+HV +GERVY+KDTD+FGD+ R  VLGV+AVSLVDDEG T A+FGA   S IV K+TG+DG+G  V+VP DV+ EG EVL+AMN++ +DQ L F KFMGMFDQ TRRAY+ +W  KK D   R+TFL+ +M+ LDDDEAFI  QG +ALAG+D DVR+ MFE L++T TK +RE +ILEWM+VK  PD +EEFLQ MYE+LM+DDDYIAMEG+KA T LRIL ++QA IF KFM   + EDRA YAA YR  R S S+K+  L  L++L
Sbjct:    1 MSHVTLGERVYIKDTDMFGDVERTTVLGVEAVSLVDDEGTTKAFFGANKASAIVKKDTGVDGTGVAVDVPTDVRVEGAEVLTAMNIAPDDQGLKFAKFMGMFDQATRRAYMDEWVAKKDDVAERETFLQNLMDALDDDEAFITNQGGQALAGLDPDVRQYMFERLLTTVTKADRESLILEWMSVKNSPDKKEEFLQGMYELLMEDDDYIAMEGRKALTRLRILADEQADIFTKFMTTVSAEDRAKYAAEYRKVRTSASKKKSLLNYLVNL 270
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPA4_ECTSI4.640e-10862.22EsV-1-72 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNK1_ESV1K2.660e-10761.85EsV-1-72 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:163063..163872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size810
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-72
Ec32 orthologEc-06_006080.1
Cds size810
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.3361032-CDS-P-littoralis_Contig15:163062..1638721680789711.3361032-CDS-P-littoralis_Contig15:163062..163872Pylaiella littoralis U1_48CDSP-littoralis_Contig15 163063..163872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.64.1prot_P-littoralis_Contig15.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 163063..163872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.64.1

>prot_P-littoralis_Contig15.64.1 ID=prot_P-littoralis_Contig15.64.1|Name=mRNA_P-littoralis_Contig15.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=270bp
MAHVAVGERVYVKDTDVFGDIARKRVLGVDAVSLVDDEGNTVAYFGAKID
SDIVNKETGLDGSGADVEVPVDVKEEGIEVLSAMNVSAEDQRLMFVKFMG
MFDQETRRAYVADWKEKKGDPELRKTFLEGMMNDLDDDEAFIQEQGTRAL
AGVDEDVRRGMFEALVSTRTKEEREGMILEWMTVKGHPDAREEFLQKMYE
ILMDDDDYIAMEGKKAFTELRILEEDQAAIFAKFMAVTTVEDRAAYAANY
RSARRSRSQKRLFLQKLIDL
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mRNA from alignment at P-littoralis_Contig15:163063..163872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.64.1 ID=mRNA_P-littoralis_Contig15.64.1|Name=mRNA_P-littoralis_Contig15.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=810bp|location=Sequence derived from alignment at P-littoralis_Contig15:163063..163872+ (Pylaiella littoralis U1_48)
ATGGCTCACGTGGCAGTCGGCGAGCGCGTTTACGTGAAGGACACCGACGT
GTTTGGTGACATCGCGAGGAAGAGGGTCTTGGGCGTCGATGCCGTCAGCC
TCGTGGACGACGAGGGGAACACGGTCGCGTATTTCGGGGCAAAGATCGAT
TCCGACATCGTCAACAAAGAGACCGGGTTGGACGGAAGCGGTGCGGATGT
CGAAGTTCCCGTGGACGTGAAGGAAGAAGGCATCGAGGTGCTCTCGGCGA
TGAATGTTTCGGCGGAGGATCAGCGCCTCATGTTTGTCAAGTTCATGGGA
ATGTTTGACCAAGAGACCCGCCGAGCATACGTGGCCGACTGGAAGGAGAA
GAAGGGCGATCCCGAGCTGCGCAAGACTTTCCTCGAAGGAATGATGAACG
ATCTCGACGACGACGAGGCCTTCATCCAAGAACAAGGCACCAGGGCCCTA
GCGGGCGTGGACGAGGACGTGAGACGGGGCATGTTCGAGGCTCTGGTCTC
GACGCGCACGAAGGAGGAGCGCGAAGGCATGATCCTCGAGTGGATGACGG
TCAAGGGCCATCCCGACGCCAGGGAAGAGTTTCTTCAGAAGATGTACGAG
ATATTGATGGACGACGACGACTACATCGCGATGGAGGGCAAGAAGGCCTT
CACGGAGCTGAGGATCCTGGAGGAGGACCAGGCCGCCATCTTCGCCAAGT
TCATGGCCGTGACGACCGTGGAGGACCGTGCGGCGTACGCCGCGAACTAT
CGAAGCGCACGACGGTCTCGGTCTCAGAAGAGACTCTTCCTGCAGAAGCT
GATCGATCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:163063..163872+

>mRNA_P-littoralis_Contig15.64.1 ID=mRNA_P-littoralis_Contig15.64.1|Name=mRNA_P-littoralis_Contig15.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=810bp|location=Sequence derived from alignment at P-littoralis_Contig15:163063..163872+ (Pylaiella littoralis U1_48)
ATGGCTCACGTGGCAGTCGGCGAGCGCGTTTACGTGAAGGACACCGACGT
GTTTGGTGACATCGCGAGGAAGAGGGTCTTGGGCGTCGATGCCGTCAGCC
TCGTGGACGACGAGGGGAACACGGTCGCGTATTTCGGGGCAAAGATCGAT
TCCGACATCGTCAACAAAGAGACCGGGTTGGACGGAAGCGGTGCGGATGT
CGAAGTTCCCGTGGACGTGAAGGAAGAAGGCATCGAGGTGCTCTCGGCGA
TGAATGTTTCGGCGGAGGATCAGCGCCTCATGTTTGTCAAGTTCATGGGA
ATGTTTGACCAAGAGACCCGCCGAGCATACGTGGCCGACTGGAAGGAGAA
GAAGGGCGATCCCGAGCTGCGCAAGACTTTCCTCGAAGGAATGATGAACG
ATCTCGACGACGACGAGGCCTTCATCCAAGAACAAGGCACCAGGGCCCTA
GCGGGCGTGGACGAGGACGTGAGACGGGGCATGTTCGAGGCTCTGGTCTC
GACGCGCACGAAGGAGGAGCGCGAAGGCATGATCCTCGAGTGGATGACGG
TCAAGGGCCATCCCGACGCCAGGGAAGAGTTTCTTCAGAAGATGTACGAG
ATATTGATGGACGACGACGACTACATCGCGATGGAGGGCAAGAAGGCCTT
CACGGAGCTGAGGATCCTGGAGGAGGACCAGGCCGCCATCTTCGCCAAGT
TCATGGCCGTGACGACCGTGGAGGACCGTGCGGCGTACGCCGCGAACTAT
CGAAGCGCACGACGGTCTCGGTCTCAGAAGAGACTCTTCCTGCAGAAGCT
GATCGATCTA
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