mRNA_P-littoralis_Contig1015.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1015.13.1
Unique NamemRNA_P-littoralis_Contig1015.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 2.860e-99
Identity = 258/311 (82.96%), Postives = 263/311 (84.57%), Query Frame = 2 
Query:   20 RVAYAGSTSKKIYTVDTRDPMSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHRRFLNNSRPRRSRHAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAASSSPGVGMGEVGEDREPSLELMHALRGHTVKNWPIRCAFFRGLHHRPPRVRLGVAKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGRYCGGMGNNDLGNDWQHSLVLATGSTDGSIHVFDLSNGQ 952
            RVAYAGSTSKKIYTVDTRDPM VVA WNC AFVNSLHVYSDGSKVVSADASGKILTWDTRTGG+VDSYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHRRFLN SRP       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+   + P          +EPSLELMHALRGHTVKNWPIR     GLHHRPPRVRLG+AKGG   XXXXXXXXXXXXXXXXXXXXXXXXXXXX           MG  DLGNDWQHSLVLATGS DGSIHVFDLS GQ
Sbjct:  272 RVAYAGSTSKKIYTVDTRDPMGVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHRRFLN-SRPXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGEAKP----------KEPSLELMHALRGHTVKNWPIR-----GLHHRPPRVRLGLAKGGNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQ 553
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BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A5D6XXH4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXH4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.970e-16
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2 
Query:   29 YAGSTSKKIYTVDTRDPMSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYS-LEDPIH--ISHIQASPPDAGRQ-DEEGLLLAANCFDNTLRVFHRR 352
            + G++   I+ VD+R    VV +W  +A VNSL+V  DG  +V+ D+ G + TWD R    +D  S L DP    ISHI ASPP  GR+ DE+G  LAAN +DN LRV+ RR
Sbjct:  196 FFGTSKSCIHQVDSR--ADVVRSWQNDAMVNSLYVSPDGQFIVTGDSKGMLKTWDVRMDACIDDISKLNDPGRHAISHIHASPPVDGRRGDEDGRFLAANSYDNLLRVYDRR 305
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BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A8K1CHV1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHV1_PYTOL)

HSP 1 Score: 86.7 bits (213), Expect = 8.180e-15
Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = 2 
Query:   29 YAGSTSKKIYTVDTRDPM---SVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYSLE-DPIH--ISHIQASPPDAGRQ-DEEGLLLAANCFDNTLRVFHRR 352
            + G++   I+ VD+R  +   S   TW  +A VNSL+V  DG  VV+ D+ G I TWD R    ++  S E DP    ISHI ASPP  GR  DE+G  LAAN +DN LRV+ RR
Sbjct:  216 FMGTSKSAIHMVDSRADVCRWSDCVTWQNDAMVNSLYVSPDGQFVVTGDSKGMIKTWDVRMESCIEDISRENDPGRHAISHIHASPPVDGRGGDEDGRFLAANSYDNILRVYDRR 330
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BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A2D4BDQ6_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ6_PYTIN)

HSP 1 Score: 83.2 bits (204), Expect = 1.110e-13
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2 
Query:   29 YAGSTSKKIYTVDTRDPMSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYSLE-DPIH--ISHIQASPPDAGRQ-DEEGLLLAANCFDNTLRVFHRR 352
            + G++   I+ +D+R    V   W   A VNSL+V  DG  V++ D+ G I TWD R    ++  S + DP +  ISHI ASPP  GR  DE+G  LAAN +DN LRV+ RR
Sbjct:  211 FLGTSKNAIHMMDSR--AEVCRKWQNNAMVNSLYVSPDGQFVITGDSRGMIKTWDVRMESCIEDISRQNDPGNHAISHIHASPPVDGRSGDEDGRFLAANSYDNILRVYDRR 320
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BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.650e-10
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:  851 MGNNDLGNDWQHSLVLATGSTDGSIHVFDLSNGQ 952
            MG  DLGNDWQHSLVLATGS DGSIHVFDLS GQ
Sbjct:    1 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQ 34
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BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.110e-7
Identity = 34/97 (35.05%), Postives = 41/97 (42.27%), Query Frame = 2 
Query:  662 AFFRGLHHRPPRVRLGVAKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGRYCGGMGNNDLGNDWQHSLVLATGSTDGSIHVFDLSNGQ 952
            AFF+GL HR PR+R   A                                           GG+G  D G DW HSLVLATGS DG+I+ FD+S G+
Sbjct:    2 AFFKGLQHRTPRMRRAAAGNSAGGSAHGRRAAAESVG------------------------GGIGYEDSGKDWAHSLVLATGSADGNIYTFDMSKGE 74
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BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A2V3IL28_9FLOR (WD repeat-containing protein 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL28_9FLOR)

HSP 1 Score: 58.2 bits (139), Expect = 1.610e-5
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:   38 STSKK-IYTVDTR-------DPMSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRT------GGI-------VDSYSLEDPIH-ISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHR 349
            +TSK  ++ +D R       DP+++VA    E+ VN++HV  DG++ ++ D  G I +WD R       GG+       +D+   ++  H I+H+   PP AG  ++ G L+A N +D  LRV+ R
Sbjct:  250 ATSKNAVHLIDRRAPTRPVTDPLTLVAN---ESVVNTIHVTLDGNRFITGDHGGAIKSWDLRMVESKDQGGVEKRDAALLDTAFNDENHHPITHVHTCPPTAG--EDFGRLMAVNSYDAFLRVYDR 370
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE2.860e-9982.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XXH4_9STRA6.970e-1646.43Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1CHV1_PYTOL8.180e-1546.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BDQ6_PYTIN1.110e-1343.75Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
D8LEF6_ECTSI2.650e-1088.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z281_9STRA5.110e-735.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V3IL28_9FLOR1.610e-532.54WD repeat-containing protein 5B n=1 Tax=Gracilario... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1015contigP-littoralis_Contig1015:48014..50693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000021036
PFAMsWD40
Model size1194
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.36e-15
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota,1MDN9@121069|Pythiales
DescriptionSource PGD
Cds size972
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.4230096-UTR-P-littoralis_Contig1015:48013..481561680789355.4230096-UTR-P-littoralis_Contig1015:48013..48156Pylaiella littoralis U1_48UTRP-littoralis_Contig1015 48014..48156 -
1680789355.4584196-UTR-P-littoralis_Contig1015:50614..506931680789355.4584196-UTR-P-littoralis_Contig1015:50614..50693Pylaiella littoralis U1_48UTRP-littoralis_Contig1015 50615..50693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789355.432823-CDS-P-littoralis_Contig1015:48156..485501680789355.432823-CDS-P-littoralis_Contig1015:48156..48550Pylaiella littoralis U1_48CDSP-littoralis_Contig1015 48157..48550 -
1680789355.442843-CDS-P-littoralis_Contig1015:49402..499081680789355.442843-CDS-P-littoralis_Contig1015:49402..49908Pylaiella littoralis U1_48CDSP-littoralis_Contig1015 49403..49908 -
1680789355.4505832-CDS-P-littoralis_Contig1015:50542..506141680789355.4505832-CDS-P-littoralis_Contig1015:50542..50614Pylaiella littoralis U1_48CDSP-littoralis_Contig1015 50543..50614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1015.13.1prot_P-littoralis_Contig1015.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1015 48157..50614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1015.13.1

>prot_P-littoralis_Contig1015.13.1 ID=prot_P-littoralis_Contig1015.13.1|Name=mRNA_P-littoralis_Contig1015.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=324bp
MSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYSL
EDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHRRFLNNSRPRR
SRHAGGGGGSGGGGSSGSGGGSHKTAGGGAGAGAAANAASSGTSSTSSQS
SDAGKAASSSPGVGMGEVGEDREPSLELMHALRGHTVKNWPIRCAFFRGL
HHRPPRVRLGVAKGGGGGGGGGGAGRGGNGRGQQGGGGGSGSGAGGGGGK
GGRYCGGMGNNDLGNDWQHSLVLATGSTDGSIHVFDLSNGQVIIFIFVLF
CFCFYEMAGKYIACIISYDKIFV*
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mRNA from alignment at P-littoralis_Contig1015:48014..50693-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1015.13.1 ID=mRNA_P-littoralis_Contig1015.13.1|Name=mRNA_P-littoralis_Contig1015.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2680bp|location=Sequence derived from alignment at P-littoralis_Contig1015:48014..50693- (Pylaiella littoralis U1_48)
CAGCGCGGGCGGCGTCGGGAGGGTGGCCTACGCGGGGTCGACCAGCAAGA
AGATTTACACGGTGGACACGCGAGACCCGATGTCGGTAGTGGCGACCTGG
AACTGCGAAGCGTTCGTAAACTCTCTCCACGTGTACTCGGACGGGAGCAA
GGTACGGTATTGTACGTAGGCGTGGCTTGGCGGCGGGGGTGGCGGGGGTG
GTGGGGGGGGGGGGGGGTGGCGGCTGGGTCTCGAATAGAATCTGGTTGAT
TATGTGTGCAGGGTTGATTTGTGATTGGGGGACGTGGAGGACGAGCCGCG
GTGGTGGGTGGTGATGGTGGTGGTGGGGGTGGTGCTTTGATGTGTTAGAT
AGGACCGGCCTCGTGGTGTGTTGTTTGGCGTTGTCCGTCCCCGCGTTTTA
CCAGCACCAGTTGTCGTACGGCAAGCGTGCCACTCATGTCCTGAAAACCG
AATGGCGTTGACGATAGCGGTGCCGGAATCGCTTGACACACTCACTGCTG
CACAACCCAATAGTGACGACATGGGGAACAAGGATTGTTTGAATTGTTGT
CGTTGATTTTCACAAGAACCTTTCACCAAGATCAGGCCGTGGTCACCAAG
ACGTGTGTGTGTGAAGTGGGTGCGTGTGTAGTACGGTTCGCCGTGGGTTG
GGTTGGTGTGGTGTGGCGTTGTGTTGCGTTGCGTGCGGTGTGTGACTGTC
GACTTGCGATATTTTTTTTTCTTCAACGGTCGGTTGTTGTCCCATGTCAT
GGTGCTATCGCGCCGCTACTGCGGTGAACACATAGGTGGTCTCGGCCGAC
GCTAGCGGCAAGATCTTGACGTGGGACACAAGGACCGGCGGGATCGTGGA
CTCGTACAGCCTCGAGGACCCCATCCATATCTCGCACATCCAGGCCTCCC
CGCCGGACGCCGGGCGACAGGACGAGGAAGGTCTCCTCCTAGCGGCCAAC
TGCTTCGACAACACCCTGCGTGTGTTCCACCGTCGCTTCTTGAACAACTC
TCGGCCGCGGCGATCGAGGCACGCCGGCGGCGGCGGCGGCAGCGGCGGCG
GCGGTAGCAGCGGCAGCGGCGGCGGTAGCCACAAGACGGCGGGGGGAGGC
GCTGGCGCGGGCGCTGCTGCCAACGCCGCCTCGTCTGGGACGTCGTCCAC
GAGCTCGCAGTCTAGCGATGCGGGCAAGGCTGCTTCTTCGTCCCCAGGGG
TTGGGATGGGGGAAGTCGGGGAGGACAGGGAGCCGTCGCTGGAGCTCATG
CACGCCCTCAGGGGACATACCGTCAAGAACTGGCCGATTCGGTGCGTGGT
TGTTTTTCACTCTTGTGGTCAGGAAATGGAAGTCGTTTCTGGTTGTTGTT
ATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGATGATGATGA
ATGAAAATGTTTCTAATCTTTTCGAGGGAATCTATGCTAGGGAGGGGGAG
GGAGGGTAAGGGACGCAGGGGGGGGGGAGGAGACCGGATGTGATCGTGTT
GGGATCGCTTTCGAGAGGGAAAATAAATACCATATCTGAGATGAGCTTCC
TGCTGAAAGACACCTACAGCAGTGACGGGGGATACGTAGATGCGCGGCAT
TTTCTTTCTCGGTATTGTTTTCCTTGGGGGTCTTATGCTACGGACCTTTC
ATGGGCGCTATACGTGTGCACGTGAGGGGTGGGAAAGACCTCGTGCGCCA
CCTTTACATCCTTGTGATCAGGAGCATGCTTCAAGTTATAACAAGGCCGC
TCAATAAACATCGAGCCGGAAAAAATGCTGCCGCCGCGTCCGCACGAAAT
CGCGAAATCTCCAACGTCGTCATGTTCATGGTATATATGTACATCTGCTG
CATGCGTGTATAGCTGTGTGTCATGTGTGTATGTTGCATGAACACGTATG
TTTTTTTGCACGGTATGCGCGTATGCACACACTGCAGCTCGTCAGACAGT
ATCGTCGCCCTCGAGAGTACCACGCATAAACAAATCATACATGTGCATTC
CATTTTTTCGGTTGAATAATACATCCAAGTATCTAGTTTGCTTGAGTTTC
CCATCTTTCGCACCCCCCCCCCCCCCAACCCCCCACCCACCCGCGCGCCG
GCTTCCCATCTCATGCATGAATACACACCACACACACCCAAAGCTGCGCG
TTCTTCAGGGGTTTGCATCACCGCCCCCCGCGTGTCCGTCTCGGGGTAGC
CAAGGGGGGCGGCGGCGGCGGCGGCGGCGGGGGTGCCGGCCGCGGCGGCA
ATGGGAGGGGGCAGCAGGGGGGAGGAGGCGGTAGCGGTAGCGGAGCCGGG
GGCGGGGGCGGAAAGGGAGGGCGCTACTGCGGAGGAATGGGGAACAACGA
CCTCGGGAACGACTGGCAGCACTCGTTGGTCCTAGCTACTGGGTCAACGG
ACGGCAGCATTCACGTGTTCGACCTCTCGAATGGGCAGGTGATCATTTTT
ATTTTTGTTTTGTTTTGTTTTTGTTTTTATGAAATGGCTGGGAAATATAT
CGCGTGCATCATATCATATGATAAGATATTTGTATGATATGCTACCGGGT
GCTAGTAGTCCGTCGGTGTGCAAGTACAAAAGCAGAATACTTTTCCGAGC
GCTTCTTTATTTATTTTTTCTGGGCGCTCAAGCGTCCTTCTTTTCTATTT
CGTCTTCGCTAGTTTTGAGGCACTGTTATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1015:48014..50693-

>mRNA_P-littoralis_Contig1015.13.1 ID=mRNA_P-littoralis_Contig1015.13.1|Name=mRNA_P-littoralis_Contig1015.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig1015:48014..50693- (Pylaiella littoralis U1_48)
ATGTCGGTAGTGGCGACCTGGAACTGCGAAGCGTTCGTAAACTCTCTCCA
CGTGTACTCGGACGGGAGCAAGGTGGTCTCGGCCGACGCTAGCGGCAAGA
TCTTGACGTGGGACACAAGGACCGGCGGGATCGTGGACTCGTACAGCCTC
GAGGACCCCATCCATATCTCGCACATCCAGGCCTCCCCGCCGGACGCCGG
GCGACAGGACGAGGAAGGTCTCCTCCTAGCGGCCAACTGCTTCGACAACA
CCCTGCGTGTGTTCCACCGTCGCTTCTTGAACAACTCTCGGCCGCGGCGA
TCGAGGCACGCCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGTAGCAGCGG
CAGCGGCGGCGGTAGCCACAAGACGGCGGGGGGAGGCGCTGGCGCGGGCG
CTGCTGCCAACGCCGCCTCGTCTGGGACGTCGTCCACGAGCTCGCAGTCT
AGCGATGCGGGCAAGGCTGCTTCTTCGTCCCCAGGGGTTGGGATGGGGGA
AGTCGGGGAGGACAGGGAGCCGTCGCTGGAGCTCATGCACGCCCTCAGGG
GACATACCGTCAAGAACTGGCCGATTCGCTGCGCGTTCTTCAGGGGTTTG
CATCACCGCCCCCCGCGTGTCCGTCTCGGGGTAGCCAAGGGGGGCGGCGG
CGGCGGCGGCGGCGGGGGTGCCGGCCGCGGCGGCAATGGGAGGGGGCAGC
AGGGGGGAGGAGGCGGTAGCGGTAGCGGAGCCGGGGGCGGGGGCGGAAAG
GGAGGGCGCTACTGCGGAGGAATGGGGAACAACGACCTCGGGAACGACTG
GCAGCACTCGTTGGTCCTAGCTACTGGGTCAACGGACGGCAGCATTCACG
TGTTCGACCTCTCGAATGGGCAGGTGATCATTTTTATTTTTGTTTTGTTT
TGTTTTTGTTTTTATGAAATGGCTGGGAAATATATCGCGTGCATCATATC
ATATGATAAGATATTTGTATGA
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