mRNA_P-littoralis_Contig15.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.63.1
Unique NamemRNA_P-littoralis_Contig15.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.63.1 vs. uniprot
Match: D8LPA6_ECTSI (EsV-1-74 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA6_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 2.450e-126
Identity = 188/266 (70.68%), Postives = 224/266 (84.21%), Query Frame = 1 
Query:  676 DTALHPGTQKETRPQEEIGSHVVGGVHRIPTSVLSPGDYVFSVISDVIDTNNKKNLKRILSRTPLPIALTRMHHMIQKAVAAGNRDIVKVVLETNKKYNVVSDLYIEAFRKGDGKSIANAMDYMQKTVHAFKTGAELNTDDLLKYFTPEFIAMNLIQSGNIEVYDRVMSEFKTEGVRISRGFHVAKPLLAAYFGVPKFFSNQKRYSFNRDIVVLAICGGSTETLDYVVKKTKVGKISHDIVLEARSCQQIPSGMMDHLVQKYAVSE 1473
            D   + G    TR  E++    +   H IP+  LSPG+Y+++VISDV+ TNNKKNL+RIL+RTPLPIA+  +HH+ QKA A GNRDI KVV++ NKKYN+VSDLY++AF KGD KSI+NAM+Y++KT  AF+TGAE NTD+LLK+FTPEFIAMNLIQSGNI  YD+VM+EFK E +RISRGFHVAKPLLAAYFGVP FFSNQKRYSFNRDI+VLAICGGSTETLDYVVKKTK+GKISHDIVLEARSCQ IP+ MM HLV+K++V E
Sbjct:  238 DARNNAGADDITREMEKLAMTNISPAH-IPSPALSPGEYMYNVISDVLGTNNKKNLQRILARTPLPIAIKYLHHIAQKAFATGNRDIHKVVVDINKKYNIVSDLYLDAFAKGDSKSISNAMNYLEKTAQAFRTGAEFNTDELLKFFTPEFIAMNLIQSGNIAAYDKVMTEFKNEEIRISRGFHVAKPLLAAYFGVPSFFSNQKRYSFNRDIIVLAICGGSTETLDYVVKKTKIGKISHDIVLEARSCQPIPAHMMKHLVEKFSVPE 502
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BLAST of mRNA_P-littoralis_Contig15.63.1 vs. uniprot
Match: Q8QNJ9_ESV1K (EsV-1-74 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ9_ESV1K)

HSP 1 Score: 381 bits (979), Expect = 2.510e-124
Identity = 186/266 (69.92%), Postives = 221/266 (83.08%), Query Frame = 1 
Query:  676 DTALHPGTQKETRPQEEIGSHVVGGVHRIPTSVLSPGDYVFSVISDVIDTNNKKNLKRILSRTPLPIALTRMHHMIQKAVAAGNRDIVKVVLETNKKYNVVSDLYIEAFRKGDGKSIANAMDYMQKTVHAFKTGAELNTDDLLKYFTPEFIAMNLIQSGNIEVYDRVMSEFKTEGVRISRGFHVAKPLLAAYFGVPKFFSNQKRYSFNRDIVVLAICGGSTETLDYVVKKTKVGKISHDIVLEARSCQQIPSGMMDHLVQKYAVSE 1473
            D   + G    T   +++    +   H IP+  LSPG+Y+++VISDV+ TNNKKNL+RIL+RTPLPIA+  +HH+ QKA A GNRDI KVV++ NKKYN+VSDLY++AF KGD KSI NAM+Y++KT  AFKTGAE NTD+LLK+FTPEFIAMNLIQSGNI  YD+VM+EFK E +RISRGFHVAKPLLAAYFGVP FFSNQKRYSFNRDI+VLAICGGSTETLDYVVKKTK+GKISHD+VLEARSCQ IP+ MM HLV+K+ V E
Sbjct:  242 DAGNNAGADDITSEMKKLAMTSISPAH-IPSPALSPGEYMYNVISDVLGTNNKKNLQRILARTPLPIAIKYLHHIAQKAFATGNRDIHKVVVDINKKYNIVSDLYLDAFAKGDSKSINNAMNYLEKTAQAFKTGAEFNTDELLKFFTPEFIAMNLIQSGNIGAYDKVMTEFKNEEIRISRGFHVAKPLLAAYFGVPSFFSNQKRYSFNRDIIVLAICGGSTETLDYVVKKTKIGKISHDVVLEARSCQPIPAHMMKHLVEKFNVPE 506
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPA6_ECTSI2.450e-12670.68EsV-1-74 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNJ9_ESV1K2.510e-12469.92EsV-1-74 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:160900..162525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1485
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionEsV-1-74
Ec32 orthologEc-06_006060.1
Cds size1485
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.27807-CDS-P-littoralis_Contig15:160899..1616471680789711.27807-CDS-P-littoralis_Contig15:160899..161647Pylaiella littoralis U1_48CDSP-littoralis_Contig15 160900..161647 -
1680789711.2907968-CDS-P-littoralis_Contig15:161689..1620401680789711.2907968-CDS-P-littoralis_Contig15:161689..162040Pylaiella littoralis U1_48CDSP-littoralis_Contig15 161690..162040 -
1680789711.3039033-CDS-P-littoralis_Contig15:162139..1625251680789711.3039033-CDS-P-littoralis_Contig15:162139..162525Pylaiella littoralis U1_48CDSP-littoralis_Contig15 162140..162525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.63.1prot_P-littoralis_Contig15.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 160900..162525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.63.1

>prot_P-littoralis_Contig15.63.1 ID=prot_P-littoralis_Contig15.63.1|Name=mRNA_P-littoralis_Contig15.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=495bp
NPGHPGQHYHQQQVHQQQVHQQQQQVQMQQMQQVQQMRQMQQMQQMQSQR
MHQQQQQARQQIQIQRQQLEARRLQVGEKQQRMQQQDGAASDDSDGSDGS
DESDESDGSDGSDGSDGSDGSDESDGSDGPALRSATSTATSTASSSDSGF
GSEDEAHAFDKKGSVKTTAADSKPEPGAGPKAKSKSESESKSKSKSKSKS
SAKFKSSANANSKSKPGPKPEPLGRDTALHPGTQKETRPQEEIGSHVVGG
VHRIPTSVLSPGDYVFSVISDVIDTNNKKNLKRILSRTPLPIALTRMHHM
IQKAVAAGNRDIVKVVLETNKKYNVVSDLYIEAFRKGDGKSIANAMDYMQ
KTVHAFKTGAELNTDDLLKYFTPEFIAMNLIQSGNIEVYDRVMSEFKTEG
VRISRGFHVAKPLLAAYFGVPKFFSNQKRYSFNRDIVVLAICGGSTETLD
YVVKKTKVGKISHDIVLEARSCQQIPSGMMDHLVQKYAVSEAQG*
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mRNA from alignment at P-littoralis_Contig15:160900..162525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.63.1 ID=mRNA_P-littoralis_Contig15.63.1|Name=mRNA_P-littoralis_Contig15.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1626bp|location=Sequence derived from alignment at P-littoralis_Contig15:160900..162525- (Pylaiella littoralis U1_48)
AACCCGGGGCACCCAGGGCAGCATTATCATCAGCAGCAGGTGCATCAGCA
GCAGGTGCATCAGCAGCAGCAGCAGGTGCAGATGCAGCAGATGCAGCAGG
TGCAGCAGATGCGGCAGATGCAGCAGATGCAGCAGATGCAGAGTCAGAGA
ATGCATCAGCAGCAGCAGCAGGCGCGGCAACAGATTCAGATTCAGCGGCA
ACAGCTCGAGGCCAGGCGGCTACAGGTTGGGGAAAAGCAGCAGAGGATGC
AGCAACAGGACGGCGCGGCGTCGGACGACTCGGACGGGTCGGACGGGTCG
GACGAATCGGACGAATCGGACGGGTCGGACGGGTCGGACGGGTCGGACGG
GTCGGACGGGTCGGACGAATCGGACGGGTCGGACGGGTCGGACGGGTCGG
ACGAGACTGCCAACGAGGACGAGGACGAGGACGAGGACGAGGACGAGGAC
GAGGTCGAGGACGAGGACGAGGTCGAGGACGCAAGACCGGCTCTGCGTTC
GGCGACTTCGACAGCGACTTCGACAGCGAGCTCGAGTGATTCCGGGTTCG
GATCAGAGGATGAGGCACATGCTTTCGACAAGAAGGGATCCGTCAAAACG
ACGGCCGCCGACTCGAAGCCCGAGCCCGGGGCGGGGCCGAAAGCCAAATC
CAAATCCGAATCCGAATCCAAATCCAAATCCAAATCCAAATCCAAATCCA
GCGCCAAATTCAAATCCAGCGCCAACGCCAATTCCAAATCCAAACCGGGT
CCCAAGCCCGAACCCCTGGGCCGAGACACGGCATTGCACCCGGGCACACA
AAAGGAGACGCGGCCGCAGGAAGAAATCGGAAGCCAGTGGCACACACCAG
AGTTCCGACCCCCGCCACCGGGACCGAGCGTTGTCGGCGGCGTCCACCGC
ATCCCGACATCCGTCCTCTCTCCGGGAGACTACGTGTTCAGCGTCATCTC
GGACGTCATCGACACAAACAACAAGAAAAATCTCAAGCGGATCCTGTCGC
GCACGCCTCTCCCGATAGCACTCACACGCATGCACCACATGATTCAGAAA
GCCGTGGCCGCTGGAAACAGGGACATCGTCAAGGTAGTTCTCGAGACGAA
CAAGAAGTACAACGTCGTCTCGGATCTGTACATCGAAGCGTTCCGCAAAG
GCGACGGGAAGTCCATCGCGAACGCCATGGACTACATGCAGAAGACCGTG
CACGCGTTCAAGACGGGCGCCGAGCTCAACACCGACGACCTCCTCAAGTA
CTTCACGCCCGAGTTCATCGCCATGAATTTGATCCAATCGGGCAACATCG
AAGTCTATGATAGAGTCATGTCGGAATTCAAAACGGAGGGGGTGCGTATC
TCACGAGGATTCCATGTTGCAAAGCCCCTCCTCGCGGCGTACTTTGGCGT
CCCGAAATTCTTCAGCAACCAGAAGAGGTACTCCTTCAACAGAGATATCG
TCGTGCTTGCCATCTGCGGAGGCAGCACCGAAACCCTCGACTACGTGGTC
AAGAAGACCAAGGTCGGCAAGATCTCACACGACATCGTGCTCGAAGCGAG
GTCGTGCCAACAGATACCCTCGGGCATGATGGACCATCTGGTGCAAAAGT
ACGCCGTCTCGGAAGCTCAAGGGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:160900..162525-

>mRNA_P-littoralis_Contig15.63.1 ID=mRNA_P-littoralis_Contig15.63.1|Name=mRNA_P-littoralis_Contig15.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1485bp|location=Sequence derived from alignment at P-littoralis_Contig15:160900..162525- (Pylaiella littoralis U1_48)
AACCCGGGGCACCCAGGGCAGCATTATCATCAGCAGCAGGTGCATCAGCA
GCAGGTGCATCAGCAGCAGCAGCAGGTGCAGATGCAGCAGATGCAGCAGG
TGCAGCAGATGCGGCAGATGCAGCAGATGCAGCAGATGCAGAGTCAGAGA
ATGCATCAGCAGCAGCAGCAGGCGCGGCAACAGATTCAGATTCAGCGGCA
ACAGCTCGAGGCCAGGCGGCTACAGGTTGGGGAAAAGCAGCAGAGGATGC
AGCAACAGGACGGCGCGGCGTCGGACGACTCGGACGGGTCGGACGGGTCG
GACGAATCGGACGAATCGGACGGGTCGGACGGGTCGGACGGGTCGGACGG
GTCGGACGGGTCGGACGAATCGGACGGGTCGGACGGACCGGCTCTGCGTT
CGGCGACTTCGACAGCGACTTCGACAGCGAGCTCGAGTGATTCCGGGTTC
GGATCAGAGGATGAGGCACATGCTTTCGACAAGAAGGGATCCGTCAAAAC
GACGGCCGCCGACTCGAAGCCCGAGCCCGGGGCGGGGCCGAAAGCCAAAT
CCAAATCCGAATCCGAATCCAAATCCAAATCCAAATCCAAATCCAAATCC
AGCGCCAAATTCAAATCCAGCGCCAACGCCAATTCCAAATCCAAACCGGG
TCCCAAGCCCGAACCCCTGGGCCGAGACACGGCATTGCACCCGGGCACAC
AAAAGGAGACGCGGCCGCAGGAAGAAATCGGAAGCCACGTTGTCGGCGGC
GTCCACCGCATCCCGACATCCGTCCTCTCTCCGGGAGACTACGTGTTCAG
CGTCATCTCGGACGTCATCGACACAAACAACAAGAAAAATCTCAAGCGGA
TCCTGTCGCGCACGCCTCTCCCGATAGCACTCACACGCATGCACCACATG
ATTCAGAAAGCCGTGGCCGCTGGAAACAGGGACATCGTCAAGGTAGTTCT
CGAGACGAACAAGAAGTACAACGTCGTCTCGGATCTGTACATCGAAGCGT
TCCGCAAAGGCGACGGGAAGTCCATCGCGAACGCCATGGACTACATGCAG
AAGACCGTGCACGCGTTCAAGACGGGCGCCGAGCTCAACACCGACGACCT
CCTCAAGTACTTCACGCCCGAGTTCATCGCCATGAATTTGATCCAATCGG
GCAACATCGAAGTCTATGATAGAGTCATGTCGGAATTCAAAACGGAGGGG
GTGCGTATCTCACGAGGATTCCATGTTGCAAAGCCCCTCCTCGCGGCGTA
CTTTGGCGTCCCGAAATTCTTCAGCAACCAGAAGAGGTACTCCTTCAACA
GAGATATCGTCGTGCTTGCCATCTGCGGAGGCAGCACCGAAACCCTCGAC
TACGTGGTCAAGAAGACCAAGGTCGGCAAGATCTCACACGACATCGTGCT
CGAAGCGAGGTCGTGCCAACAGATACCCTCGGGCATGATGGACCATCTGG
TGCAAAAGTACGCCGTCTCGGAAGCTCAAGGGTAA
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