mRNA_P-littoralis_Contig15.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.58.1
Unique NamemRNA_P-littoralis_Contig15.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.58.1 vs. uniprot
Match: D8LPB6_ECTSI (EsV-1-85 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPB6_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.210e-47
Identity = 104/234 (44.44%), Postives = 141/234 (60.26%), Query Frame = 1 
Query:    4 RKMKRLYLQAADAYSSGLTTFGAVSARRLGASGIVAVVAWGATTAIQRHAADQSKRGHGSGSRALLYHSTTPVA--AAIIAAFLAVVVFDIVLRQKTFTKLTGEGTLAEHVVFFALPLAAFGLDLNLKNLKNLSAFMLAAVAV-----VVAKKSCLVSKQNDLERRVFEQIANVLDACQAPGKAGCSHRHAGYVDAFNNMVRPHLPAKN--------AAEVARGIASRLGGKTL 660
            R+++  +++AA+AYSSG +TF A++  + GA+ IVA+VAW  T  +    A +  R    G       + T VA  AA  AAF+AV+VFD+V RQ+T +  TG     ++ +FF +PL  F   L L +  +L   + AA  +     VVAKK   V  +NDLER+VF +IAN LDAC  PGKAGC+H+HAGY+DAF NMV+P+L   N        AAEVAR IASR    TL
Sbjct:   43 RRLEEYFMKAAEAYSSGYSTFLALNTAKFGAAAIVALVAWTTTYLM----AQRRNRNRDLGEVVDQPSNATAVAGSAAFFAAFVAVLVFDVVRRQRTLSNFTGTNMFMQYAMFFCVPLGLFSAGLKLASPLDLQTSVAAAAVIXXXXXVVAKKLYFVFMENDLERKVFTEIANALDACPGPGKAGCNHKHAGYLDAFANMVKPYLDQINFILPNTLDAAEVARDIASRQKFDTL 272
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BLAST of mRNA_P-littoralis_Contig15.58.1 vs. uniprot
Match: Q8QKY3_ESV1K (EsV-1-85 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKY3_ESV1K)

HSP 1 Score: 157 bits (397), Expect = 9.260e-44
Identity = 99/234 (42.31%), Postives = 131/234 (55.98%), Query Frame = 1 
Query:    4 RKMKRLYLQAADAYSSGLTTFGAVSARRLGASGIVAVVAWGATTAIQRHAADQSKRGHGSGSRALLYHSTTPVA--AAIIAAFLAVVVFDIVLRQKTFTKLTGEGTLAEHVVFFALPLAAFGLDLNLKNLKNLSAFMLAAVAVV-----VAKKSCLVSKQNDLERRVFEQIANVLDACQAPGKAGCSHRHAGYVDAFNNMVRPHLPA--------KNAAEVARGIASRLGGKTL 660
            R+++  ++QAA+AYSSG +TF A SA R G + IVA+VAW     + +                      T +A  AA  +AF +V+VFD+V RQ+T +  TG     ++ +FF +P+  F   L L +  +L   + AA         VAKK   V  +NDLER VF QIAN LDAC  PGKAGC+H+HAGY+DAF NMV+P+L           NAAEVAR IASR    TL
Sbjct:   51 RRLEEYFMQAAEAYSSGYSTFFAFSAARFGVAAIVALVAWTTMYLVVQKRNRNLNLXXXXXXXXXXPSKATAIAGSAAFFSAFFSVLVFDVVRRQRTLSNFTGTNMFMQYTMFFCVPMGLFSAGLTLASPLDLQQSVAAAAVXXXXXXXVAKKLYFVFMENDLEREVFTQIANALDACPGPGKAGCNHKHAGYLDAFANMVKPYLDQINYIIPDPLNAAEVARDIASRQVFDTL 284
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPB6_ECTSI1.210e-4744.44EsV-1-85 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QKY3_ESV1K9.260e-4442.31EsV-1-85 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:151475..152137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size663
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionEsV-1-85
Ec32 orthologEc-06_005960.1
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.0945408-CDS-P-littoralis_Contig15:151474..1521371680789711.0945408-CDS-P-littoralis_Contig15:151474..152137Pylaiella littoralis U1_48CDSP-littoralis_Contig15 151475..152137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.58.1prot_P-littoralis_Contig15.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 151475..152137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.58.1

>prot_P-littoralis_Contig15.58.1 ID=prot_P-littoralis_Contig15.58.1|Name=mRNA_P-littoralis_Contig15.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
MRKMKRLYLQAADAYSSGLTTFGAVSARRLGASGIVAVVAWGATTAIQRH
AADQSKRGHGSGSRALLYHSTTPVAAAIIAAFLAVVVFDIVLRQKTFTKL
TGEGTLAEHVVFFALPLAAFGLDLNLKNLKNLSAFMLAAVAVVVAKKSCL
VSKQNDLERRVFEQIANVLDACQAPGKAGCSHRHAGYVDAFNNMVRPHLP
AKNAAEVARGIASRLGGKTL*
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mRNA from alignment at P-littoralis_Contig15:151475..152137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.58.1 ID=mRNA_P-littoralis_Contig15.58.1|Name=mRNA_P-littoralis_Contig15.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig15:151475..152137+ (Pylaiella littoralis U1_48)
ATGAGGAAGATGAAGCGGCTGTACCTGCAAGCGGCCGACGCCTACTCGTC
GGGTCTGACAACGTTCGGCGCCGTCAGCGCGAGGAGGCTCGGCGCTTCGG
GGATCGTGGCCGTCGTCGCGTGGGGTGCAACGACGGCCATCCAGCGCCAC
GCCGCCGATCAAAGTAAACGCGGCCACGGGTCTGGCTCCCGGGCGCTGTT
GTATCACTCGACGACTCCCGTCGCCGCGGCGATAATTGCCGCGTTCCTGG
CGGTGGTCGTGTTTGATATCGTGCTGAGGCAGAAGACGTTCACGAAGCTG
ACGGGGGAGGGCACGTTGGCCGAGCACGTCGTGTTCTTCGCGCTCCCGCT
TGCTGCCTTCGGGCTGGATCTAAATTTAAAAAATCTTAAAAATCTAAGTG
CGTTTATGCTCGCCGCCGTCGCCGTTGTGGTGGCGAAGAAGTCTTGCCTT
GTCTCGAAACAAAACGATCTGGAGCGACGAGTCTTTGAGCAAATCGCGAA
TGTTTTGGACGCGTGTCAAGCCCCCGGAAAGGCGGGGTGTAGTCACCGGC
ACGCCGGGTACGTGGATGCCTTCAACAACATGGTCCGGCCGCACCTTCCA
GCCAAGAACGCCGCCGAAGTGGCGCGCGGCATCGCTTCCAGGCTGGGGGG
AAAAACGCTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:151475..152137+

>mRNA_P-littoralis_Contig15.58.1 ID=mRNA_P-littoralis_Contig15.58.1|Name=mRNA_P-littoralis_Contig15.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig15:151475..152137+ (Pylaiella littoralis U1_48)
ATGAGGAAGATGAAGCGGCTGTACCTGCAAGCGGCCGACGCCTACTCGTC
GGGTCTGACAACGTTCGGCGCCGTCAGCGCGAGGAGGCTCGGCGCTTCGG
GGATCGTGGCCGTCGTCGCGTGGGGTGCAACGACGGCCATCCAGCGCCAC
GCCGCCGATCAAAGTAAACGCGGCCACGGGTCTGGCTCCCGGGCGCTGTT
GTATCACTCGACGACTCCCGTCGCCGCGGCGATAATTGCCGCGTTCCTGG
CGGTGGTCGTGTTTGATATCGTGCTGAGGCAGAAGACGTTCACGAAGCTG
ACGGGGGAGGGCACGTTGGCCGAGCACGTCGTGTTCTTCGCGCTCCCGCT
TGCTGCCTTCGGGCTGGATCTAAATTTAAAAAATCTTAAAAATCTAAGTG
CGTTTATGCTCGCCGCCGTCGCCGTTGTGGTGGCGAAGAAGTCTTGCCTT
GTCTCGAAACAAAACGATCTGGAGCGACGAGTCTTTGAGCAAATCGCGAA
TGTTTTGGACGCGTGTCAAGCCCCCGGAAAGGCGGGGTGTAGTCACCGGC
ACGCCGGGTACGTGGATGCCTTCAACAACATGGTCCGGCCGCACCTTCCA
GCCAAGAACGCCGCCGAAGTGGCGCGCGGCATCGCTTCCAGGCTGGGGGG
AAAAACGCTTTGA
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