mRNA_P-littoralis_Contig15.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.55.1
Unique NamemRNA_P-littoralis_Contig15.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.55.1 vs. uniprot
Match: D8LPC0_ECTSI (EsV-1-89 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPC0_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 4.490e-81
Identity = 149/263 (56.65%), Postives = 167/263 (63.50%), Query Frame = 1 
Query:    1 QPDSSFGYGLNYNPMDPYNMYPHHETGEKVYGPPPMFGYNXXXXXXXKPFNPNVFGSLFGTPAAQPPVPAA--MNTLGPNPFTPLLQPATHRFPPAPLHIPPP---------NPLLLA-----------------------------------SAMSDVADSSFNLPSYNYXXXYDPFMNHWGTPQHIHPTDPNNQYPNPLSGSMTEPGPALAGGYNIYDPHNVIGAPAASSDRERALEHNRAAMQAQSPYAPYRMHVVPVPP 651
            +PDSSFGYGL YNPMDPYNMYPH+ETGE+ YGPPP FG NXXXXXXXKPFNPN FG LFG PA   P PA   MNT+GPNPFTPLLQP T                      NPLL+A                                   SA  D   SS++  +  Y     PF  H  +PQ+ HPTDPNNQYP+PL+GSMTEPGPALAGGYN+YDPHNVIGAP A S+R+RALEHN+A MQ+QSPYAPY M+ VPVPP
Sbjct:   11 EPDSSFGYGLVYNPMDPYNMYPHYETGEEKYGPPPPFGINXXXXXXXKPFNPNAFGGLFGAPATVAPTPATGVMNTVGPNPFTPLLQPMTPAXXXXXXXXXXXXXXXXMGGMNPLLMAATVSALGKDSSFTPGAAPSSSFNTGXXXXXXSFDASASGDAPSSSYHYMNALYPYYSYPFATHAVSPQNPHPTDPNNQYPHPLTGSMTEPGPALAGGYNVYDPHNVIGAPPAFSERDRALEHNKAVMQSQSPYAPYIMNQVPVPP 273
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BLAST of mRNA_P-littoralis_Contig15.55.1 vs. uniprot
Match: Q8QNI8_ESV1K (EsV-1-89 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNI8_ESV1K)

HSP 1 Score: 210 bits (535), Expect = 1.630e-64
Identity = 142/282 (50.35%), Postives = 162/282 (57.45%), Query Frame = 1 
Query:    1 QPDSSFGYGLNYNPMDPYNMYPHHETGEKVYGPPPMFGYNXXXXXXXKPFNPNVFGSLFGTPAAQPPVPA--AMNTLGPNPFTPLLQP---ATHRFPPAPLHIPPP--------NPLLLASAMSDVA-DSSFNL---PS------------------------------------------YNYXXXYDPFMNHWGTPQHIHPTDPNNQYP-----NPLSGSMTEPGPALAGGYNIYDPHNVIGAPAASSDRERALEHNRAAMQAQSPYAPYRMHVVPVPPS 654
            +PDSSFGYGLNYNPMDP NMYPHHETGE+VYGPPP+FG  XXXXXXX   NPN F  LFG PA   P PA   MNT+GPNPFTPLLQP   A    PP+  H+ PP        NPLL+A+ +S ++ DSSFN    PS                                          Y+Y     P+                         NPL+GSMT+PGPALAGGYN+YDP NVIGAP A S+R RALEHNRAA+Q+QSPYAPY M+ VPVPPS
Sbjct:   11 EPDSSFGYGLNYNPMDPLNMYPHHETGEEVYGPPPLFGIXXXXXXXXXXXNPNAFSGLFGAPAMATPTPAPGVMNTVGPNPFTPLLQPMAPAMXXXPPS--HVAPPMVAPMGGMNPLLMAATVSALSKDSSFNAGAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHYMNALYPYXXXXXXXXXXXXXXXXXXXXXXXXXNPLTGSMTDPGPALAGGYNVYDPQNVIGAPPAFSERARALEHNRAAVQSQSPYAPYIMNQVPVPPS 290
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPC0_ECTSI4.490e-8156.65EsV-1-89 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNI8_ESV1K1.630e-6450.35EsV-1-89 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:147793..148449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size657
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-89
Ec32 orthologEc-06_005920.1
Cds size657
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.9805868-CDS-P-littoralis_Contig15:147792..1484491680789710.9805868-CDS-P-littoralis_Contig15:147792..148449Pylaiella littoralis U1_48CDSP-littoralis_Contig15 147793..148449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.55.1prot_P-littoralis_Contig15.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 147793..148449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.55.1

>prot_P-littoralis_Contig15.55.1 ID=prot_P-littoralis_Contig15.55.1|Name=mRNA_P-littoralis_Contig15.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp
QPDSSFGYGLNYNPMDPYNMYPHHETGEKVYGPPPMFGYNKHDPFNMKPF
NPNVFGSLFGTPAAQPPVPAAMNTLGPNPFTPLLQPATHRFPPAPLHIPP
PNPLLLASAMSDVADSSFNLPSYNYNYNYDPFMNHWGTPQHIHPTDPNNQ
YPNPLSGSMTEPGPALAGGYNIYDPHNVIGAPAASSDRERALEHNRAAMQ
AQSPYAPYRMHVVPVPPS*
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mRNA from alignment at P-littoralis_Contig15:147793..148449-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.55.1 ID=mRNA_P-littoralis_Contig15.55.1|Name=mRNA_P-littoralis_Contig15.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig15:147793..148449- (Pylaiella littoralis U1_48)
CAACCCGATTCCTCTTTCGGCTATGGCTTGAACTACAACCCCATGGACCC
GTACAACATGTATCCGCACCACGAGACCGGGGAGAAAGTCTATGGCCCCC
CGCCGATGTTCGGGTACAACAAGCACGACCCTTTCAACATGAAGCCGTTC
AATCCCAACGTTTTCGGCTCCTTGTTTGGAACCCCGGCCGCCCAACCCCC
GGTACCCGCCGCGATGAACACCCTCGGACCCAACCCGTTCACCCCCCTTC
TTCAGCCCGCGACGCACCGCTTTCCGCCGGCCCCGCTACACATCCCACCC
CCGAACCCGCTGCTGCTGGCCTCGGCCATGTCGGATGTGGCAGACTCGTC
TTTCAACCTGCCCTCGTACAATTACAATTACAATTACGACCCTTTCATGA
ATCACTGGGGGACGCCCCAGCACATCCACCCCACGGACCCCAACAACCAG
TACCCCAACCCGTTGTCGGGATCGATGACGGAGCCCGGGCCGGCCCTCGC
CGGCGGCTACAATATTTACGACCCGCACAACGTCATCGGTGCACCCGCGG
CGTCCAGTGACAGAGAAAGAGCCCTGGAGCACAACCGGGCCGCCATGCAG
GCGCAGAGCCCCTACGCGCCGTACCGCATGCACGTCGTCCCCGTGCCACC
ATCTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:147793..148449-

>mRNA_P-littoralis_Contig15.55.1 ID=mRNA_P-littoralis_Contig15.55.1|Name=mRNA_P-littoralis_Contig15.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig15:147793..148449- (Pylaiella littoralis U1_48)
CAACCCGATTCCTCTTTCGGCTATGGCTTGAACTACAACCCCATGGACCC
GTACAACATGTATCCGCACCACGAGACCGGGGAGAAAGTCTATGGCCCCC
CGCCGATGTTCGGGTACAACAAGCACGACCCTTTCAACATGAAGCCGTTC
AATCCCAACGTTTTCGGCTCCTTGTTTGGAACCCCGGCCGCCCAACCCCC
GGTACCCGCCGCGATGAACACCCTCGGACCCAACCCGTTCACCCCCCTTC
TTCAGCCCGCGACGCACCGCTTTCCGCCGGCCCCGCTACACATCCCACCC
CCGAACCCGCTGCTGCTGGCCTCGGCCATGTCGGATGTGGCAGACTCGTC
TTTCAACCTGCCCTCGTACAATTACAATTACAATTACGACCCTTTCATGA
ATCACTGGGGGACGCCCCAGCACATCCACCCCACGGACCCCAACAACCAG
TACCCCAACCCGTTGTCGGGATCGATGACGGAGCCCGGGCCGGCCCTCGC
CGGCGGCTACAATATTTACGACCCGCACAACGTCATCGGTGCACCCGCGG
CGTCCAGTGACAGAGAAAGAGCCCTGGAGCACAACCGGGCCGCCATGCAG
GCGCAGAGCCCCTACGCGCCGTACCGCATGCACGTCGTCCCCGTGCCACC
ATCTTGA
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