mRNA_P-littoralis_Contig15.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.54.1
Unique NamemRNA_P-littoralis_Contig15.54.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.54.1 vs. uniprot
Match: D8LPC1_ECTSI (EsV-1-90 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPC1_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.650e-15
Identity = 41/80 (51.25%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 MTLDKVYAKIQEDAKTKNQVDGRRFNSRSREKMQREIALIKKINHNNRLKSASTKHLYKGMYSQEDVDRSRQEKKDFRKE 240
            MTL KV+AKIQE+ +  N VDGRRFNSRSREKM+REI ++K+       K+A+ +  +KG++SQE++  + +EKK FR++
Sbjct:    1 MTLSKVHAKIQEEKRKLNPVDGRRFNSRSREKMEREIRVLKRSTWKLAQKNAAARQSHKGVFSQEEIAFAEEEKKKFREQ 80
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BLAST of mRNA_P-littoralis_Contig15.54.1 vs. uniprot
Match: Q8QNI7_ESV1K (EsV-1-90 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNI7_ESV1K)

HSP 1 Score: 72.4 bits (176), Expect = 9.330e-15
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    1 MTLDKVYAKIQEDAKTKNQVDGRRFNSRSREKMQREIALIKKINHNNRLKSASTKHLYKGMYSQEDVDRSRQEKKDFRKE 240
            MTL KV+A+IQE+ +  N +DGRRFNSRSREKM+REI +IKK       K+A+ K  ++G++SQE++  +++EK+ FR++
Sbjct:   14 MTLSKVHARIQEEKRKLNPIDGRRFNSRSREKMEREIRVIKKSACKLAQKNAAAKQSHRGIFSQEEIAFAKEEKQKFREQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPC1_ECTSI1.650e-1551.25EsV-1-90 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNI7_ESV1K9.330e-1550.00EsV-1-90 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:147483..147722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size240
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-90
Ec32 orthologEc-06_005910.1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.944325-CDS-P-littoralis_Contig15:147482..1477221680789710.944325-CDS-P-littoralis_Contig15:147482..147722Pylaiella littoralis U1_48CDSP-littoralis_Contig15 147483..147722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.54.1prot_P-littoralis_Contig15.54.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 147483..147722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.54.1

>prot_P-littoralis_Contig15.54.1 ID=prot_P-littoralis_Contig15.54.1|Name=mRNA_P-littoralis_Contig15.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
MTLDKVYAKIQEDAKTKNQVDGRRFNSRSREKMQREIALIKKINHNNRLK
SASTKHLYKGMYSQEDVDRSRQEKKDFRKE
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mRNA from alignment at P-littoralis_Contig15:147483..147722-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.54.1 ID=mRNA_P-littoralis_Contig15.54.1|Name=mRNA_P-littoralis_Contig15.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig15:147483..147722- (Pylaiella littoralis U1_48)
ATGACCCTGGACAAGGTGTACGCCAAGATCCAAGAGGATGCCAAAACAAA
AAACCAGGTGGACGGCAGGAGGTTCAATTCGCGCAGTCGTGAGAAGATGC
AGCGAGAAATCGCCCTGATCAAGAAGATCAACCACAACAACCGGCTGAAG
AGCGCGTCCACCAAGCACCTTTACAAGGGGATGTATTCGCAGGAAGACGT
TGATCGTTCCCGGCAGGAAAAGAAGGACTTTAGGAAGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:147483..147722-

>mRNA_P-littoralis_Contig15.54.1 ID=mRNA_P-littoralis_Contig15.54.1|Name=mRNA_P-littoralis_Contig15.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig15:147483..147722- (Pylaiella littoralis U1_48)
ATGACCCTGGACAAGGTGTACGCCAAGATCCAAGAGGATGCCAAAACAAA
AAACCAGGTGGACGGCAGGAGGTTCAATTCGCGCAGTCGTGAGAAGATGC
AGCGAGAAATCGCCCTGATCAAGAAGATCAACCACAACAACCGGCTGAAG
AGCGCGTCCACCAAGCACCTTTACAAGGGGATGTATTCGCAGGAAGACGT
TGATCGTTCCCGGCAGGAAAAGAAGGACTTTAGGAAGGAA
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