mRNA_P-littoralis_Contig15.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.53.1
Unique NamemRNA_P-littoralis_Contig15.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.53.1 vs. uniprot
Match: Q8QNI6_ESV1K (EsV-1-91 n=2 Tax=root TaxID=1 RepID=Q8QNI6_ESV1K)

HSP 1 Score: 701 bits (1810), Expect = 1.260e-248
Identity = 361/553 (65.28%), Postives = 440/553 (79.57%), Query Frame = 1
Query:    1 MSVNRLSDLGTSLSRVDGVHKKYLNLSSAERNKVLFPNSADTELSFDEQSNVLGMKILNFEMPHTRYAIDRNVNSLYLSEKWGEDEYHFYSLRVSTGGYSIQSLSAAMELSCRCPVLLSGDKAMGNTYSFNATSLFGKVGFVSSGDYDFTIHAAFETVTLTSITADSATEATVSFFASYGEMFKPGALLTLKAYNYPDREVQVVETISDR---TVRLIGYFSDLDCETLSVSMSTMVPYSGQNSVARIMGLGESDLSGHSDFELLSIGSPFSASDDDLQNASVMLVTNFTTFISVGDYVRLSGIRGFMNDAVYQVSAVHDESHMEIYVDRSSLWSHESGRLADPSDPSVEWGVDAIDLSSVSNNLVELVCTLSSPTSLSTGDPVTFVGFDAEELSVVDAAVVHVDDTGSSVTVQFTYPTTYLLEDGVSSLSPVNPDTMIRTTYITPDRFDMSRGRRIALCRAIVDNQDVGSIHIPSLSARSFFGRIQLFSGAELVNFLSKDTAIGTHEFNSVLKRLNKIRLQFFNEDGTPYDFIGVDYTMFLELTCMDSNKGL 1650
            MSVNR SDL TSLSR DGVH KYLNLSSA+R+K L+P+SAD EL+FD+QSNV+GMKILNFE+PHTRYAID   N+LY+SEK GEDEY+FYS+RVS G +SIQ+L  A+ LS +CPV+ +GD+ MGN Y+FN + LFGK+G VSSGDY++ IHA+  TVTL+SI  +S TEA +SF A   ++FKPGALL  + Y Y DR+VQVVE         VR+IG FSDLD E L VS+S MVPY+G NS+A+I+G GESDL+  ++  +LSIGSPFS S+D L++ASVM+  +   F+S GD  RLSG+ GFMND V  V+ VHDE+H+E+YV+R++LWSHE+G LA+ SDP VEWGV  I LS V +N VE+V T SSPT+LS GD V F GF +EE   ++A  V VD+    +TVQF YPT  L EDGV+SLSPVNP+T + TTYI P+RFD+SRGRR+ LCRAIVDNQDVGSIHIPSLS RSFFGRIQLFSGA LVNFL KDTA+G+HEFNSV+KR+NKIR QF+NE+GT YDFIGVDYTMFLEL C+DSNKGL
Sbjct:    1 MSVNRRSDLDTSLSRTDGVHHKYLNLSSADRDKTLYPDSADAELTFDDQSNVIGMKILNFEIPHTRYAIDNTTNNLYISEKRGEDEYYFYSIRVSPGAHSIQNLCVALTLSSKCPVMFNGDRDMGNEYTFNTSLLFGKIGIVSSGDYEYIIHASTATVTLSSIIVNSDTEAVLSFLAPSDQVFKPGALLVFQPYTYSDRDVQVVENTESSGQSEVRVIGDFSDLDWENLDVSLSRMVPYAGVNSMAKIIGFGESDLADQANSGVLSIGSPFS-SNDTLEDASVMVSLDKAHFLSAGDSARLSGVPGFMNDMVCTVAVVHDETHVEMYVNRAALWSHEAGTLANLSDPGVEWGVTDISLSGVDSNAVEIVITPSSPTTLSAGDVVVFNGFHSEEFQDLNATAVLVDED-EGITVQFDYPTILLFEDGVTSLSPVNPETTLGTTYIAPNRFDLSRGRRMVLCRAIVDNQDVGSIHIPSLSTRSFFGRIQLFSGANLVNFLGKDTAVGSHEFNSVMKRINKIRFQFYNENGTTYDFIGVDYTMFLELVCLDSNKGL 551          
BLAST of mRNA_P-littoralis_Contig15.53.1 vs. uniprot
Match: B5LWJ7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ7_9PHYC)

HSP 1 Score: 398 bits (1022), Expect = 1.320e-129
Identity = 227/534 (42.51%), Postives = 338/534 (63.30%), Query Frame = 1
Query:   67 YLNLSSAERNKVLFPNSADTELSFDEQSNVLGMKILNFEMPHTRYAIDRNVNSLYLSEKWGEDEYHFYSLRVSTGGYSIQSLSAAMELSCRCPVLLSGDKAMGNTYSFNATSLFGKVGFVSSGDYDFTIHAAFETVTLTSITADSATEATVSFFASYGEMFKPGALLTLKAYNYPDREVQVVETISDRTVRLIGYFSDLDCETLSVSMSTMVPYSGQNSVARIMGLGESDLSGHSD--FELLSIGSPFSASDDDLQNASVMLVTNFTTFISVGDYVRLSGIRGF-MNDAVYQ-VSAVHDESHMEIYVDRSSLWSHESG-RLADPSDPSVEWGVDAIDLSSVSNNLVELVCTLSSPTSLSTGDPVTFVGFDAE-ELSVVDAAVVHVDDTGSSVTVQFTYPTTYLLEDGVSSLSPVNPDTMIRTTYITPDRFDMSRGRRIALCRAIVDNQDVGSIHIPSLSARSFFGRIQLFSGAELVNFLSKDTAIGTHEFNSVLKRLNKIRLQFFNEDGTPYDFIGVDYTMFLELTCMDSNKGL 1650
            +++LSSA R+K  F +S D E++FD+  NV+G+++LNFE+PHTRYAID + N+LY+SEK G+D Y+F+ LR  TGGY+I +L+ A+ELS + P++ +      N+Y+F+A S  GK+  +SSG   + +H   E ++L      S T+++V F A +  +  PGA+LTLK YNY DREVQV ET   RTV ++G FS  D ET   + S +VPYS   ++   +G G +DL+   D  F++L   SPFS + D     S  +++ F  F+S GD+V LSG   F + D V+  V + +D++H++I +D + L+    G ++A    PS  + V  I L +V +NLV +  + S  ++   GD V   GF++  ELS     V  V       T  FTYPT    E+    +SP+  +T + TT+++P RFD+S+GRR+ LCR  VD +D+G+ HI + S  +FFGRIQLFSGA+LVNFLS+  A+G H+F S++KRL  +R +F+NEDG+ Y F GVDYT+FL++  + SN GL
Sbjct:    6 FVSLSSASRDKNAFTSSDDCEINFDDIVNVVGIELLNFEVPHTRYAIDDSDNTLYISEKVGDDVYNFFGLRAGTGGYTISNLAVALELSQKTPIVYNAGTVPLNSYNFSAASSVGKLAIISSGLLPYNVHVCKEVLSLVKFEKISDTKSSVQFIAPFEYILAPGAMLTLKLYNYTDREVQVTETTGPRTVTVLGDFSG-DFETDVSTSSELVPYSSSQNICETLGFGLTDLASDVDTKFDVLGFQSPFSCTVDSENLVSPRVLSKFPIFVSPGDHVVLSGSESFGIADGVHATVVSTYDDTHLDISIDPNRLFDSSGGLQVASVDSPSETFTVSEIGLDTVEDNLVTIRVSTSEASNYGEGDEVYITGFESSSELSSTVFQVQSVAPEDLEFTCTFTYPTLPPPENLSMKISPICDETGVPTTFVSPHRFDLSKGRRVMLCRVSVDGKDLGTTHIQN-SRVTFFGRIQLFSGADLVNFLSRHQAVGRHDFPSLVKRLRSLRFRFYNEDGSEYRFEGVDYTVFLKIATLHSNTGL 537          
BLAST of mRNA_P-littoralis_Contig15.53.1 vs. uniprot
Match: Q6XM57_9PHYC (FirrV-1-A30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM57_9PHYC)

HSP 1 Score: 386 bits (991), Expect = 8.610e-125
Identity = 224/534 (41.95%), Postives = 329/534 (61.61%), Query Frame = 1
Query:   67 YLNLSSAERNKVLFPNSADTELSFDEQSNVLGMKILNFEMPHTRYAIDRNVNSLYLSEKWGEDEYHFYSLRVSTGGYSIQSLSAAMELSCRCPVLLSGDKA-MGNTYSFNATSLFGKVGFVSSGDYDFTIHAAFETVTLTSITADSATEATVSFFASYGEMFKPGALLTLKAYNYPDREVQVVETISDRTVRLIGYFSDLDCETLS-VSMSTMVPYSGQNSVARIMGLGESDLSGHSD--FELLSIGSPFSASDDDLQNASVMLVTNFTTFISVGDYVRLSGIRGFMN-DAVYQVSAVHDESHMEIYVDRSSLWS-HESGRLADPSDPSVEWGVDAIDLSSVSNNLVELVCTLSSPTSLSTGDPVTFVGFDAEELSVVDAAVVHVDDTGSSVTVQFTYPTTYLLEDGVSSLSPVNPDTMIRTTYITPDRFDMSRGRRIALCRAIVDNQDVGSIHIPSLSARSFFGRIQLFSGAELVNFLSKDTAIGTHEFNSVLKRLNKIRLQFFNEDGTPYDFIGVDYTMFLELTCMDSNKGL 1650
            YL+LSSA R+K  F +S D E++FD+  NV+G++++NFE+PHTRYAID + NSLY+SE+ G+  YHFY LR+ TGGY+I +L  ++ELS +  +  +GD   + N+YS  A+   GKV  VSSG   + IH   ET+T+T       + A VSF A Y  +  PGA+L LK + + DREVQV+ T   RTV L G F+DL  ETL     STMVPYS   +V+  +GLG++DL    D  FE+L + SP + S+         ++ +F  F+S GD V +S     ++    Y VS+ +D++H +IYVD ++L    E   L   SD S    V  I ++ + NN V ++      T    G+ V   G  + E++  +  +  V+     +T  FTYP + + +D +S +SP N  T   TTY++P RFD+S+GRR+ LCRA +D +D+G+ HI   S   FFGRIQL SGA++VNFLS   A+G H F S++K+L+++R +F+NE+GT Y+F GVDYT+ L++T + SN G+
Sbjct:   25 YLSLSSASRDKNTFTSSDDCEIAFDDIHNVIGLELVNFEIPHTRYAIDSDNNSLYISEQVGDQLYHFYGLRLGTGGYTISNLCTSLELSQQAAMPYNGDTTGLMNSYSIMASQSVGKVAIVSSGTVPYNIHVCTETLTVTHFDKQGDSSALVSFLAPYEYILAPGAMLMLKLHTHLDREVQVIATEGARTVELFGDFTDLTTETLDGTDSSTMVPYSSFQNVSDTLGLGDTDLVSDVDTAFEVLGVQSPIATSNP-------RILVDFPIFVSPGDSVSISDSSSMLDLGGPYTVSSTYDDTHFDIYVDANTLLDVDEDTDLQITSDKSTFSSVSDISITGIDNNTVTVLIQTFEVTDYGVGETVYLTGLSSPEMTDRELNLTSVNSASLQLTATFTYPVSAINKDTMS-ISPCNAATGHPTTYVSPHRFDLSKGRRMMLCRASIDGRDLGTTHIQD-SRTVFFGRIQLLSGADMVNFLSAHQAMGRHRFTSLVKKLHRLRFRFYNENGTEYNFEGVDYTVLLKITTLYSNTGV 549          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNI6_ESV1K1.260e-24865.28EsV-1-91 n=2 Tax=root TaxID=1 RepID=Q8QNI6_ESV1K[more]
B5LWJ7_9PHYC1.320e-12942.51Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM57_9PHYC8.610e-12541.95FirrV-1-A30 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:144933..146585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1653
Hectar predicted targeting categoryother localisation
Exons1
Cds size1653
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.9144852-CDS-P-littoralis_Contig15:144932..1465851680789710.9144852-CDS-P-littoralis_Contig15:144932..146585Pylaiella littoralis U1_48CDSP-littoralis_Contig15 144933..146585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.53.1prot_P-littoralis_Contig15.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 144933..146585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.53.1

>prot_P-littoralis_Contig15.53.1 ID=prot_P-littoralis_Contig15.53.1|Name=mRNA_P-littoralis_Contig15.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=551bp
MSVNRLSDLGTSLSRVDGVHKKYLNLSSAERNKVLFPNSADTELSFDEQS
NVLGMKILNFEMPHTRYAIDRNVNSLYLSEKWGEDEYHFYSLRVSTGGYS
IQSLSAAMELSCRCPVLLSGDKAMGNTYSFNATSLFGKVGFVSSGDYDFT
IHAAFETVTLTSITADSATEATVSFFASYGEMFKPGALLTLKAYNYPDRE
VQVVETISDRTVRLIGYFSDLDCETLSVSMSTMVPYSGQNSVARIMGLGE
SDLSGHSDFELLSIGSPFSASDDDLQNASVMLVTNFTTFISVGDYVRLSG
IRGFMNDAVYQVSAVHDESHMEIYVDRSSLWSHESGRLADPSDPSVEWGV
DAIDLSSVSNNLVELVCTLSSPTSLSTGDPVTFVGFDAEELSVVDAAVVH
VDDTGSSVTVQFTYPTTYLLEDGVSSLSPVNPDTMIRTTYITPDRFDMSR
GRRIALCRAIVDNQDVGSIHIPSLSARSFFGRIQLFSGAELVNFLSKDTA
IGTHEFNSVLKRLNKIRLQFFNEDGTPYDFIGVDYTMFLELTCMDSNKGL
*
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mRNA from alignment at P-littoralis_Contig15:144933..146585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.53.1 ID=mRNA_P-littoralis_Contig15.53.1|Name=mRNA_P-littoralis_Contig15.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1653bp|location=Sequence derived from alignment at P-littoralis_Contig15:144933..146585- (Pylaiella littoralis U1_48)
ATGTCGGTGAATCGTCTCTCGGATCTCGGCACATCTCTGTCTCGAGTGGA TGGCGTCCACAAGAAGTACCTGAACCTGTCGTCGGCGGAAAGAAACAAGG TTCTGTTCCCGAATTCCGCCGACACCGAGCTCTCTTTCGACGAACAGTCG AACGTTCTCGGCATGAAGATTCTTAATTTTGAGATGCCTCACACGAGATA CGCCATCGACAGGAACGTCAACAGCCTTTACCTCAGCGAAAAGTGGGGCG AGGACGAGTACCATTTCTATTCTCTGCGCGTGTCCACCGGCGGGTATTCG ATCCAGAGTCTATCCGCCGCGATGGAGCTGTCGTGCAGGTGCCCCGTGCT GCTCAGCGGTGACAAAGCAATGGGAAATACGTACAGTTTCAATGCCACGT CCTTGTTCGGCAAGGTAGGGTTCGTTTCCTCCGGCGACTACGATTTCACG ATCCACGCGGCCTTCGAGACGGTGACCCTGACCTCGATCACGGCCGACTC CGCGACGGAGGCAACCGTATCGTTTTTCGCCTCGTACGGCGAGATGTTCA AGCCGGGGGCCCTGCTCACCCTCAAGGCGTACAACTACCCGGACAGGGAA GTTCAGGTCGTCGAGACGATATCCGATCGGACGGTTCGGCTGATCGGATA CTTCTCGGACCTCGACTGCGAAACCCTCAGCGTTTCGATGTCAACAATGG TCCCCTACTCCGGTCAGAACTCTGTGGCGAGAATCATGGGCCTCGGTGAG TCGGACCTGTCGGGTCATTCCGATTTCGAGCTGCTCTCGATCGGGTCTCC GTTCTCCGCCAGCGACGACGACCTGCAGAACGCGTCGGTGATGCTGGTCA CGAATTTCACGACTTTTATCTCGGTCGGCGACTACGTGCGGCTCTCCGGA ATACGCGGGTTCATGAATGACGCGGTGTACCAGGTGTCCGCCGTGCACGA CGAAAGCCACATGGAGATCTACGTCGACCGATCGTCGCTGTGGTCGCACG AGTCCGGGAGACTGGCCGACCCTTCCGATCCGTCCGTGGAGTGGGGGGTA GACGCGATAGACCTTTCGTCCGTGAGTAACAACCTCGTGGAGCTCGTTTG CACCCTTTCTTCGCCCACGTCTCTCTCCACGGGAGACCCCGTGACCTTCG TCGGGTTCGACGCGGAGGAGCTTTCGGTTGTCGACGCGGCCGTGGTCCAC GTGGACGACACCGGCAGCAGCGTGACGGTCCAGTTCACCTACCCGACGAC GTACCTGCTGGAAGACGGCGTGAGCTCGCTGTCCCCCGTCAACCCGGACA CCATGATACGCACCACGTACATAACGCCCGACCGGTTCGACATGAGCCGG GGGAGACGGATCGCCCTGTGCCGGGCCATCGTCGACAACCAGGACGTCGG GTCGATCCACATACCGTCTCTGTCGGCGAGATCCTTCTTCGGGAGGATCC AGCTCTTCTCGGGAGCGGAGCTCGTCAACTTCCTCAGCAAAGACACCGCT ATCGGGACGCACGAGTTCAACAGCGTGCTCAAACGGCTCAACAAGATCCG CTTGCAGTTCTTCAACGAGGATGGCACCCCGTACGACTTCATCGGCGTGG ATTACACGATGTTTCTGGAACTGACCTGCATGGATTCCAACAAGGGACTT TAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:144933..146585-

>mRNA_P-littoralis_Contig15.53.1 ID=mRNA_P-littoralis_Contig15.53.1|Name=mRNA_P-littoralis_Contig15.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1653bp|location=Sequence derived from alignment at P-littoralis_Contig15:144933..146585- (Pylaiella littoralis U1_48)
ATGTCGGTGAATCGTCTCTCGGATCTCGGCACATCTCTGTCTCGAGTGGA
TGGCGTCCACAAGAAGTACCTGAACCTGTCGTCGGCGGAAAGAAACAAGG
TTCTGTTCCCGAATTCCGCCGACACCGAGCTCTCTTTCGACGAACAGTCG
AACGTTCTCGGCATGAAGATTCTTAATTTTGAGATGCCTCACACGAGATA
CGCCATCGACAGGAACGTCAACAGCCTTTACCTCAGCGAAAAGTGGGGCG
AGGACGAGTACCATTTCTATTCTCTGCGCGTGTCCACCGGCGGGTATTCG
ATCCAGAGTCTATCCGCCGCGATGGAGCTGTCGTGCAGGTGCCCCGTGCT
GCTCAGCGGTGACAAAGCAATGGGAAATACGTACAGTTTCAATGCCACGT
CCTTGTTCGGCAAGGTAGGGTTCGTTTCCTCCGGCGACTACGATTTCACG
ATCCACGCGGCCTTCGAGACGGTGACCCTGACCTCGATCACGGCCGACTC
CGCGACGGAGGCAACCGTATCGTTTTTCGCCTCGTACGGCGAGATGTTCA
AGCCGGGGGCCCTGCTCACCCTCAAGGCGTACAACTACCCGGACAGGGAA
GTTCAGGTCGTCGAGACGATATCCGATCGGACGGTTCGGCTGATCGGATA
CTTCTCGGACCTCGACTGCGAAACCCTCAGCGTTTCGATGTCAACAATGG
TCCCCTACTCCGGTCAGAACTCTGTGGCGAGAATCATGGGCCTCGGTGAG
TCGGACCTGTCGGGTCATTCCGATTTCGAGCTGCTCTCGATCGGGTCTCC
GTTCTCCGCCAGCGACGACGACCTGCAGAACGCGTCGGTGATGCTGGTCA
CGAATTTCACGACTTTTATCTCGGTCGGCGACTACGTGCGGCTCTCCGGA
ATACGCGGGTTCATGAATGACGCGGTGTACCAGGTGTCCGCCGTGCACGA
CGAAAGCCACATGGAGATCTACGTCGACCGATCGTCGCTGTGGTCGCACG
AGTCCGGGAGACTGGCCGACCCTTCCGATCCGTCCGTGGAGTGGGGGGTA
GACGCGATAGACCTTTCGTCCGTGAGTAACAACCTCGTGGAGCTCGTTTG
CACCCTTTCTTCGCCCACGTCTCTCTCCACGGGAGACCCCGTGACCTTCG
TCGGGTTCGACGCGGAGGAGCTTTCGGTTGTCGACGCGGCCGTGGTCCAC
GTGGACGACACCGGCAGCAGCGTGACGGTCCAGTTCACCTACCCGACGAC
GTACCTGCTGGAAGACGGCGTGAGCTCGCTGTCCCCCGTCAACCCGGACA
CCATGATACGCACCACGTACATAACGCCCGACCGGTTCGACATGAGCCGG
GGGAGACGGATCGCCCTGTGCCGGGCCATCGTCGACAACCAGGACGTCGG
GTCGATCCACATACCGTCTCTGTCGGCGAGATCCTTCTTCGGGAGGATCC
AGCTCTTCTCGGGAGCGGAGCTCGTCAACTTCCTCAGCAAAGACACCGCT
ATCGGGACGCACGAGTTCAACAGCGTGCTCAAACGGCTCAACAAGATCCG
CTTGCAGTTCTTCAACGAGGATGGCACCCCGTACGACTTCATCGGCGTGG
ATTACACGATGTTTCTGGAACTGACCTGCATGGATTCCAACAAGGGACTT
TAA
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