mRNA_P-littoralis_Contig15.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.45.1
Unique NamemRNA_P-littoralis_Contig15.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig15.45.1 vs. uniprot
Match: D8LPD7_ECTSI (FirrV-1-B24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD7_ECTSI)

HSP 1 Score: 442 bits (1138), Expect = 3.550e-154
Identity = 223/310 (71.94%), Postives = 246/310 (79.35%), Query Frame = 1 
Query:    7 TPVIPDAVLDFFAGSGGINILASPLFLEKHTGSGRVYLPDHDIYHAGKDSGGKPVYTVYRIVGKEYKHNTIQGMLRVRLVSGYGVKGGGADGADG--LMRPNDLKRLMTEGTTSIKRNSVVVFQTGMVARLEDIEIFCDLPLINKWDLVKKDSADAICKRDMYKATRGEENWAHVKQGALIRDMESSVHQLILPYYRRYRENKNDPQHFFRAFMEDMVRTCTAHHTNFTTGCSFDELLGDIAEKSRKRSFPSLQTETRPRKKWGG--GGTPCAPRAPVGQAVEPMVPMETDIVAATLKHVSREKIAQIIF 924
            +PVIP +VL FFAGSGG+NILASPLFL+KHTG  RV LP HDIYHAGKD  G  VYTVYRI+ KEYKHNTIQGML V LVSGYGVK     G+     MRPNDLK+LMTEGTTSIKRNSVVVFQTGMV RLEDIEIFCDLPLINK DL++K S  A+CKRDMYKATRGE+NWAHVK GALI+DMESSVHQL+LPYYRRYR+N ND QHFFRAFMEDM+RTC AHH NF  G  FD+LL  I E+++KRS PSLQTETRPRKKWGG        P  PV   V  +   + D+V   LK+VSREKIA IIF
Sbjct:    6 SPVIPSSVLAFFAGSGGVNILASPLFLQKHTGRSRVVLPTHDIYHAGKDKEGNAVYTVYRILAKEYKHNTIQGMLCVSLVSGYGVKDDSVRGSSNSVFMRPNDLKKLMTEGTTSIKRNSVVVFQTGMVVRLEDIEIFCDLPLINKRDLIEKQSVGAVCKRDMYKATRGEDNWAHVKAGALIKDMESSVHQLLLPYYRRYRDNSNDSQHFFRAFMEDMIRTCDAHHKNFIEGEHFDDLLTGIVERNKKRSCPSLQTETRPRKKWGGKLDAAGSGPETPVSPTVSGVTKTKRDLVKDALKNVSREKIASIIF 315
[Close]
BLAST of mRNA_P-littoralis_Contig15.45.1 vs. uniprot
Match: Q8QNH2_ESV1K (EsV-1-106 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH2_ESV1K)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-11
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = -1 
Query:  562 PLFPRTSLRLKRRE*PLPALFRDIPQQLVETAAGREVSVVGRARPDHVLHEGPEEVLRVILVLPVAPVVRENELVN 789
            PL P   LRL+RR  PL     +I QQLVE +   E+ VVG  RP HVLHEG EEVL V+ ++PVA VVR+ +LV+
Sbjct:   54 PLLPGACLRLQRRTRPLLVALDNIRQQLVEVSTLGEILVVGVTRPYHVLHEGSEEVLWVVAIVPVASVVRQKKLVD 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPD7_ECTSI3.550e-15471.94FirrV-1-B24 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Q8QNH2_ESV1K1.010e-1153.95EsV-1-106 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:130421..131863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size927
Hectar predicted targeting categoryother localisation
Exons3
Cds size927
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.5589416-CDS-P-littoralis_Contig15:130420..1307111680789710.5589416-CDS-P-littoralis_Contig15:130420..130711Pylaiella littoralis U1_48CDSP-littoralis_Contig15 130421..130711 +
1680789710.5677648-CDS-P-littoralis_Contig15:130792..1313591680789710.5677648-CDS-P-littoralis_Contig15:130792..131359Pylaiella littoralis U1_48CDSP-littoralis_Contig15 130793..131359 +
1680789710.576245-CDS-P-littoralis_Contig15:131794..1318631680789710.576245-CDS-P-littoralis_Contig15:131794..131863Pylaiella littoralis U1_48CDSP-littoralis_Contig15 131795..131863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.45.1prot_P-littoralis_Contig15.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 130421..131863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.45.1

>prot_P-littoralis_Contig15.45.1 ID=prot_P-littoralis_Contig15.45.1|Name=mRNA_P-littoralis_Contig15.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=309bp
MSTPVIPDAVLDFFAGSGGINILASPLFLEKHTGSGRVYLPDHDIYHAGK
DSGGKPVYTVYRIVGKEYKHNTIQGMLRVRLVSGYGVKGGGADGADGLMR
PNDLKRLMTEGTTSIKRNSVVVFQTGMVARLEDIEIFCDLPLINKWDLVK
KDSADAICKRDMYKATRGEENWAHVKQGALIRDMESSVHQLILPYYRRYR
ENKNDPQHFFRAFMEDMVRTCTAHHTNFTTGCSFDELLGDIAEKSRKRSF
PSLQTETRPRKKWGGGGTPCAPRAPVGQAVEPMVPMETDIVAATLKHVSR
EKIAQIIF*
back to top

mRNA from alignment at P-littoralis_Contig15:130421..131863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.45.1 ID=mRNA_P-littoralis_Contig15.45.1|Name=mRNA_P-littoralis_Contig15.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1443bp|location=Sequence derived from alignment at P-littoralis_Contig15:130421..131863+ (Pylaiella littoralis U1_48)
ATGTCGACCCCTGTCATACCAGATGCGGTCCTGGATTTCTTCGCTGGTTC
CGGTGGGATAAACATCCTTGCGTCACCCTTATTCCTCGAGAAACACACGG
GATCTGGTCGCGTGTACCTCCCTGACCACGACATCTACCACGCCGGCAAG
GACAGTGGTGGCAAGCCCGTCTACACCGTCTACCGCATCGTGGGCAAAGA
GTACAAGCATAACACCATCCAAGGGATGCTCAGGGTGAGGCTCGTTTCGG
GGTACGGCGTGAAGGGTGGGGGCGCCGACGGCGCCGACGGTGTCGCCCAT
GCCGACGGTGCCGACGGTGCCGACGGTGCCGACGGTGCCGACGGTGCCGA
CGGCGCCGATCGCGGCACGGAGCTGATGAGACCTAACGATCTGAAGCGGT
TGATGACCGAGGGGACGACCTCGATAAAGAGGAACTCGGTCGTTGTTTTC
CAGACCGGGATGGTGGCGAGGCTGGAAGACATCGAAATATTTTGCGATCT
TCCGCTGATCAACAAGTGGGATCTGGTGAAGAAAGACAGCGCGGATGCGA
TATGCAAGCGCGACATGTACAAGGCGACGCGGGGGGAGGAGAACTGGGCG
CACGTCAAGCAGGGTGCTCTGATTCGGGACATGGAGTCTTCCGTTCACCA
GCTCATTCTCCCGTACTACCGGCGCTACAGGGAGAACAAGAATGACCCGC
AGCACTTCTTCCGGGCCTTCATGGAGGACATGGTCCGGACGTGCACGGCC
CACCACACTAACTTCACGACCGGCTGCAGTTTCGACGAGTTGCTGGGGGA
TATCGCGGAAAAGAGCAGGAAGAGGTCATTCCCGTCGCTTCAGACGGAGA
CTCGTCCTCGGAAAAAGTGGGGGGGTGGTGGCACGCCGTGTGCGCCACGG
GCACCCGTTGGACAGGCGGTGGAACCGATGGTTCCGATGGTTCCGATGGT
TCCGATGGAACCGATGGAACCGATGGCGGCACCGATGGCGGCACCGATGG
CGGCACCGATGGCGGCACCGATGGCGGCACCGATGGCGGCACCGATGGCG
GCACCGATGGCGGAACCGATGAAACCACGGGCACCGATGGCGGAACCGAT
GAAACCACAGGCACCTCAGGCACCGATGGGACCGATGGGACCGATGGGAC
CGATGGGACCGATGGGACCGATGGAACCGATGGGACCGATGGGACCGATG
GCGGCACCGATGGAACCGCAGGCATCGACGGCATCGAGGGGACGGACGGG
ACAGAAGGCACCGATGGAACCAAAGGCATCGAAGGCACCGAGGGGACCGA
GGGGACCGAGGGGACCGAATGGACCGAGGGGATCGAGGGGACCGAAGGGA
CCGAAGGGACCGAAGGGACCGAAGGAAACCGACATCGTGGCTGCCACGCT
GAAGCACGTTTCGAGAGAGAAGATCGCCCAGATTATATTTTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig15:130421..131863+

>mRNA_P-littoralis_Contig15.45.1 ID=mRNA_P-littoralis_Contig15.45.1|Name=mRNA_P-littoralis_Contig15.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=927bp|location=Sequence derived from alignment at P-littoralis_Contig15:130421..131863+ (Pylaiella littoralis U1_48)
ATGTCGACCCCTGTCATACCAGATGCGGTCCTGGATTTCTTCGCTGGTTC
CGGTGGGATAAACATCCTTGCGTCACCCTTATTCCTCGAGAAACACACGG
GATCTGGTCGCGTGTACCTCCCTGACCACGACATCTACCACGCCGGCAAG
GACAGTGGTGGCAAGCCCGTCTACACCGTCTACCGCATCGTGGGCAAAGA
GTACAAGCATAACACCATCCAAGGGATGCTCAGGGTGAGGCTCGTTTCGG
GGTACGGCGTGAAGGGTGGGGGCGCCGACGGCGCCGACGGTCTGATGAGA
CCTAACGATCTGAAGCGGTTGATGACCGAGGGGACGACCTCGATAAAGAG
GAACTCGGTCGTTGTTTTCCAGACCGGGATGGTGGCGAGGCTGGAAGACA
TCGAAATATTTTGCGATCTTCCGCTGATCAACAAGTGGGATCTGGTGAAG
AAAGACAGCGCGGATGCGATATGCAAGCGCGACATGTACAAGGCGACGCG
GGGGGAGGAGAACTGGGCGCACGTCAAGCAGGGTGCTCTGATTCGGGACA
TGGAGTCTTCCGTTCACCAGCTCATTCTCCCGTACTACCGGCGCTACAGG
GAGAACAAGAATGACCCGCAGCACTTCTTCCGGGCCTTCATGGAGGACAT
GGTCCGGACGTGCACGGCCCACCACACTAACTTCACGACCGGCTGCAGTT
TCGACGAGTTGCTGGGGGATATCGCGGAAAAGAGCAGGAAGAGGTCATTC
CCGTCGCTTCAGACGGAGACTCGTCCTCGGAAAAAGTGGGGGGGTGGTGG
CACGCCGTGTGCGCCACGGGCACCCGTTGGACAGGCGGTGGAACCGATGG
TTCCGATGGAAACCGACATCGTGGCTGCCACGCTGAAGCACGTTTCGAGA
GAGAAGATCGCCCAGATTATATTTTAA
back to top