mRNA_P-littoralis_Contig15.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.39.1
Unique NamemRNA_P-littoralis_Contig15.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.39.1 vs. uniprot
Match: D8LPE1_ECTSI (Hpt domain protein, EsV-1-113 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPE1_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.040e-30
Identity = 60/105 (57.14%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:    1 MDKVISIPEAMAMCDNDDDFFEELVEVMREDVLECSTLVASAYANNDPDALRQVAHRVKGQAASMAAKALRDASRKVEDASKNGSCTKTEYLQLMSAAQDFLRHT 315
            M+ V+ I E +AMCDND+ F +E+V +MR D++EC +L+A A+ NN+P   R+VAHRVKGQAASMAAK L   S+KVEDA+K G CTKTEYL L+ + ++F+R T
Sbjct:    1 MENVLCIQETVAMCDNDEIFMKEMVVLMRNDIVECLSLLAEAFNNNNPARTREVAHRVKGQAASMAAKDLMLHSKKVEDAAKIGFCTKTEYLSLVLSMKEFVRCT 105
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BLAST of mRNA_P-littoralis_Contig15.39.1 vs. uniprot
Match: Q8QNG6_ESV1K (EsV-1-113 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNG6_ESV1K)

HSP 1 Score: 107 bits (267), Expect = 5.350e-28
Identity = 55/105 (52.38%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 MDKVISIPEAMAMCDNDDDFFEELVEVMREDVLECSTLVASAYANNDPDALRQVAHRVKGQAASMAAKALRDASRKVEDASKNGSCTKTEYLQLMSAAQDFLRHT 315
            M+KV+ +  A+ MCDND++F +E+V +MR+D+++C +L+A A+ +ND    R+VAHRVKGQAA +AAK L   S+KVEDA+K G CTKTEYL L+   ++F+R T
Sbjct:    1 MEKVLCVKGALEMCDNDEEFLKEMVGLMRDDIMKCLSLLAEAFDDNDSSRTREVAHRVKGQAAMLAAKDLLLQSKKVEDAAKIGFCTKTEYLSLVLNMKEFVRCT 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPE1_ECTSI2.040e-3057.14Hpt domain protein, EsV-1-113 n=1 Tax=Ectocarpus s... [more]
Q8QNG6_ESV1K5.350e-2852.38EsV-1-113 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:124898..125236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog398579.Spea_0292
PFAMsHpt
Model size339
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000109
EggNOG OGs29NKE@1|root,309ID@2|Bacteria,1QSXC@1224|Proteobacteria,1RWII@1236|Gammaproteobacteria,2QCQH@267890|Shewanellaceae
Ec32 ortholog descriptionEsV-1-113 Hpt domain protein
Ec32 orthologEc-06_005700.1
DescriptionHpt domain
Cds size339
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.3674834-CDS-P-littoralis_Contig15:124897..1252361680789710.3674834-CDS-P-littoralis_Contig15:124897..125236Pylaiella littoralis U1_48CDSP-littoralis_Contig15 124898..125236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.39.1prot_P-littoralis_Contig15.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 124898..125236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.39.1

>prot_P-littoralis_Contig15.39.1 ID=prot_P-littoralis_Contig15.39.1|Name=mRNA_P-littoralis_Contig15.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MDKVISIPEAMAMCDNDDDFFEELVEVMREDVLECSTLVASAYANNDPDA
LRQVAHRVKGQAASMAAKALRDASRKVEDASKNGSCTKTEYLQLMSAAQD
FLRHTAKKKKSL*
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mRNA from alignment at P-littoralis_Contig15:124898..125236-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.39.1 ID=mRNA_P-littoralis_Contig15.39.1|Name=mRNA_P-littoralis_Contig15.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig15:124898..125236- (Pylaiella littoralis U1_48)
ATGGATAAGGTGATTTCGATCCCTGAAGCCATGGCGATGTGCGACAACGA
TGACGACTTTTTTGAAGAACTTGTTGAGGTCATGCGTGAAGACGTCTTGG
AGTGTTCTACGCTGGTCGCGAGCGCGTACGCCAATAACGACCCGGATGCA
CTGAGACAAGTGGCCCACCGAGTAAAGGGTCAGGCCGCAAGCATGGCAGC
GAAAGCGCTGCGCGACGCGTCGAGAAAGGTGGAGGATGCTTCCAAGAATG
GTTCTTGCACCAAAACAGAGTATTTGCAGCTGATGTCGGCCGCCCAAGAC
TTCCTCCGGCACACCGCCAAAAAGAAGAAGAGCTTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:124898..125236-

>mRNA_P-littoralis_Contig15.39.1 ID=mRNA_P-littoralis_Contig15.39.1|Name=mRNA_P-littoralis_Contig15.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig15:124898..125236- (Pylaiella littoralis U1_48)
ATGGATAAGGTGATTTCGATCCCTGAAGCCATGGCGATGTGCGACAACGA
TGACGACTTTTTTGAAGAACTTGTTGAGGTCATGCGTGAAGACGTCTTGG
AGTGTTCTACGCTGGTCGCGAGCGCGTACGCCAATAACGACCCGGATGCA
CTGAGACAAGTGGCCCACCGAGTAAAGGGTCAGGCCGCAAGCATGGCAGC
GAAAGCGCTGCGCGACGCGTCGAGAAAGGTGGAGGATGCTTCCAAGAATG
GTTCTTGCACCAAAACAGAGTATTTGCAGCTGATGTCGGCCGCCCAAGAC
TTCCTCCGGCACACCGCCAAAAAGAAGAAGAGCTTGTGA
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