mRNA_P-littoralis_Contig15.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.32.1
Unique NamemRNA_P-littoralis_Contig15.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.32.1 vs. uniprot
Match: Q8QNE9_ESV1K (EsV-1-130 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNE9_ESV1K)

HSP 1 Score: 174 bits (442), Expect = 1.760e-53
Identity = 85/143 (59.44%), Postives = 109/143 (76.22%), Query Frame = 1 
Query:    1 MTDHRKQVEEYIKNVLPRSYKSGDIADMYARLETDVEQLREMSPTMNQKHMETLLHEKHKAFAFSYPNLFFKVVRGEIDKKMLKSLLDLKHGLDENNISLDEARNRVIDCAKNDIEASKGRPRAKAAKPPGTVVQELRFECKP 429
            M  HR++VEEYI+N LP S+ +  I++MYA LE D+  +R  SP M+QK ME +LH++HK  AFSYP LFFK+VRGE+D  ML SLL LK  LDE ++SL+ ARNRVID AK+ IE ++G+PR + AKP GTVVQEL F+CKP
Sbjct:    1 MPTHRQEVEEYIENNLPESFVASTISEMYAALERDIRLIRSKSPGMDQKQMEMMLHQRHKKLAFSYPGLFFKIVRGEVDPAMLTSLLSLKQSLDERDVSLEVARNRVIDYAKSQIEETQGKPRVRKAKPTGTVVQELSFKCKP 143
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BLAST of mRNA_P-littoralis_Contig15.32.1 vs. uniprot
Match: D8LPF6_ECTSI (EsV-1-130 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPF6_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.870e-53
Identity = 85/142 (59.86%), Postives = 110/142 (77.46%), Query Frame = 1 
Query:    7 DHRKQVEEYIKNVLPRSYKSGDIADMYARLETDVEQLREMSPTMNQKHMETLLHEKHKAFAFSYPNLFFKVVRGEIDKKMLKSLLDLKHGLDENNISLDEARNRVIDCAKNDIEASKGRPRAKAAKPPGTVVQELRFECKPE 432
            +HR+ VE+YI N LP S+ S  I++MYA LE D++ ++  SP M QK ME +LH++HK  AFSYP+LFFK+VRGE+D  ML SLL LK  LDE ++SLD+ARNRVID AK  IE ++G+PRA+ AKP GTVVQEL F+CKP+
Sbjct:    5 NHRQAVEDYIANDLPESFVSSTISEMYAALERDIQVIKSKSPGMTQKQMEIVLHQRHKKLAFSYPSLFFKIVRGEVDPAMLASLLSLKQRLDERDVSLDDARNRVIDYAKIQIEETRGKPRARKAKPAGTVVQELSFKCKPD 146
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BLAST of mRNA_P-littoralis_Contig15.32.1 vs. uniprot
Match: Q6XM79_9PHYC (FirrV-1-A8 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM79_9PHYC)

HSP 1 Score: 85.5 bits (210), Expect = 2.290e-18
Identity = 50/138 (36.23%), Postives = 80/138 (57.97%), Query Frame = 1 
Query:   22 VEEYIKNV---LPRSYKSGDIADMYARLETDVEQLREMSPTMNQKHMETLLHEKHKAFAFSYPNLFFKVVRGEIDKKMLKSLLDLKHGLDENNISLDEARNRVIDCAKNDIEASKGRPRAKAAKPPGTVVQELRFECK 426
            ++ Y+K     LP S+ S +I  M++ L  D+E  R         H +T++  +HK  AFSYP+LF+K ++G+++  +L+S+L +KH LD   IS D AR  V+D AK  IEAS+ + + K+A   G   Q    +C+
Sbjct:    1 MQSYVKREISNLPGSFTSEEIDRMHSDLIKDMEAYR------GHPHFDTVMCARHKTLAFSYPSLFYKTIKGDMEPHLLRSILHIKHLLDTGKISQDRAREMVVDGAKKQIEASQ-KTKNKSAAASGGAEQAFAIKCQ 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNE9_ESV1K1.760e-5359.44EsV-1-130 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPF6_ECTSI1.870e-5359.86EsV-1-130 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q6XM79_9PHYC2.290e-1836.23FirrV-1-A8 n=1 Tax=Feldmannia irregularis virus a ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:110430..110882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-130
Ec32 orthologEc-06_005550.1
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.1185563-CDS-P-littoralis_Contig15:110429..1108821680789710.1185563-CDS-P-littoralis_Contig15:110429..110882Pylaiella littoralis U1_48CDSP-littoralis_Contig15 110430..110882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.32.1prot_P-littoralis_Contig15.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 110430..110882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.32.1

>prot_P-littoralis_Contig15.32.1 ID=prot_P-littoralis_Contig15.32.1|Name=mRNA_P-littoralis_Contig15.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
MTDHRKQVEEYIKNVLPRSYKSGDIADMYARLETDVEQLREMSPTMNQKH
METLLHEKHKAFAFSYPNLFFKVVRGEIDKKMLKSLLDLKHGLDENNISL
DEARNRVIDCAKNDIEASKGRPRAKAAKPPGTVVQELRFECKPEAGTGES
*
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mRNA from alignment at P-littoralis_Contig15:110430..110882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.32.1 ID=mRNA_P-littoralis_Contig15.32.1|Name=mRNA_P-littoralis_Contig15.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig15:110430..110882+ (Pylaiella littoralis U1_48)
ATGACGGACCACCGAAAACAAGTAGAAGAGTACATCAAGAACGTCCTCCC
GCGGAGCTACAAGTCCGGAGACATAGCAGACATGTACGCCAGGCTAGAGA
CAGACGTGGAACAGCTGCGGGAGATGTCTCCCACCATGAACCAGAAACAC
ATGGAAACGCTGCTCCACGAGAAGCACAAGGCGTTTGCCTTTTCGTACCC
CAATCTCTTCTTCAAGGTAGTTCGCGGCGAAATCGATAAAAAAATGCTCA
AGTCTCTGCTCGATCTGAAACACGGTCTTGACGAGAACAACATCTCTCTC
GACGAGGCAAGGAACCGTGTGATCGATTGTGCCAAGAACGACATCGAGGC
TAGCAAAGGGCGGCCGAGGGCCAAGGCGGCCAAGCCACCGGGCACGGTCG
TGCAGGAACTACGGTTTGAATGCAAGCCAGAGGCCGGAACGGGGGAATCT
TGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:110430..110882+

>mRNA_P-littoralis_Contig15.32.1 ID=mRNA_P-littoralis_Contig15.32.1|Name=mRNA_P-littoralis_Contig15.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig15:110430..110882+ (Pylaiella littoralis U1_48)
ATGACGGACCACCGAAAACAAGTAGAAGAGTACATCAAGAACGTCCTCCC
GCGGAGCTACAAGTCCGGAGACATAGCAGACATGTACGCCAGGCTAGAGA
CAGACGTGGAACAGCTGCGGGAGATGTCTCCCACCATGAACCAGAAACAC
ATGGAAACGCTGCTCCACGAGAAGCACAAGGCGTTTGCCTTTTCGTACCC
CAATCTCTTCTTCAAGGTAGTTCGCGGCGAAATCGATAAAAAAATGCTCA
AGTCTCTGCTCGATCTGAAACACGGTCTTGACGAGAACAACATCTCTCTC
GACGAGGCAAGGAACCGTGTGATCGATTGTGCCAAGAACGACATCGAGGC
TAGCAAAGGGCGGCCGAGGGCCAAGGCGGCCAAGCCACCGGGCACGGTCG
TGCAGGAACTACGGTTTGAATGCAAGCCAGAGGCCGGAACGGGGGAATCT
TGA
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