mRNA_P-littoralis_Contig15.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.30.1
Unique NamemRNA_P-littoralis_Contig15.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.30.1 vs. uniprot
Match: Q8QNE6_ESV1K (EsV-1-133 n=2 Tax=root TaxID=1 RepID=Q8QNE6_ESV1K)

HSP 1 Score: 405 bits (1040), Expect = 4.530e-138
Identity = 220/348 (63.22%), Postives = 265/348 (76.15%), Query Frame = 1 
Query:    1 KHLHEESLDFRVLTPSDEDSIVVKGVKFLMSQLFSSVRLTIVHSRVLRRFLSLEGCPGED-TLKQFQGMIGNDETVLSVIETGNGVMISGIDTARLGEHLDTLTAHWVAKRERFIANDPAVGFYKKLFRLKFVYDHLTAVYTDRYNVYQAAYVDSAYTVRAVLCFVMQVISSLALIDDGGISLRTSRHGG----VDAVLVVVTVMYMYFNLPANSITSSMSHNCVLFNIFAKMKMYRRLIFVAMDLVVNSFLISLMPLISARLLNETTGSASIVTTFLSVFFVTSLDDTAVTKSESNNMRDSQSALLRDVTEKVDSFVDSRYMWVVAYLPWFESLLVFGSVVASYFVL 1029
            +H  +ESLD+R++T +D D+ VV+  KF + Q+F SVR  I HSRVLRRFLSL+G P +  TL  F+ M       + +IET NGVMIS ID  ++G  L+ +T+ W+ KR RF+ NDP  G YKKLFRLKF+Y+HL  VY+D+YN+YQAAYVD AYTVRAVLCFVMQ+IS  AL+ +GG S  TS  G     VD VL+VVT+M+M+FNLPANSITSSMSHN VLF++F KMKMY RL FV MDLVVN F+ISLMP++SARLL +T  SASIVT  LSVFFVTSLDD+A+TKSESNNM  SQSALLRDVTEKVD FVDS  +W VAYLPW E LL+  SV  SY +L
Sbjct:    9 RHFADESLDYRIMTTADSDNAVVRCGKFFLRQIFGSVRKIISHSRVLRRFLSLKGLPTQQGTLLLFKDM----PDAIDMIETANGVMISNIDADKMGARLNAMTSRWLEKRGRFVENDPEAGLYKKLFRLKFIYNHLDEVYSDKYNIYQAAYVDPAYTVRAVLCFVMQIISFAALMKEGGGSGETSLAGDHRSTVDVVLIVVTIMFMFFNLPANSITSSMSHNVVLFHVFFKMKMYGRLAFVVMDLVVNFFIISLMPVVSARLLYDTNDSASIVTKSLSVFFVTSLDDSAITKSESNNMSASQSALLRDVTEKVDHFVDSDRLWFVAYLPWVEMLLLIASVTVSYSIL 352
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNE6_ESV1K4.530e-13863.22EsV-1-133 n=2 Tax=root TaxID=1 RepID=Q8QNE6_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:108024..109064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1041
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-133
Ec32 orthologEc-06_005520.1
Cds size1041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.0516403-CDS-P-littoralis_Contig15:108023..1090641680789710.0516403-CDS-P-littoralis_Contig15:108023..109064Pylaiella littoralis U1_48CDSP-littoralis_Contig15 108024..109064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.30.1prot_P-littoralis_Contig15.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 108024..109064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.30.1

>prot_P-littoralis_Contig15.30.1 ID=prot_P-littoralis_Contig15.30.1|Name=mRNA_P-littoralis_Contig15.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=347bp
KHLHEESLDFRVLTPSDEDSIVVKGVKFLMSQLFSSVRLTIVHSRVLRRF
LSLEGCPGEDTLKQFQGMIGNDETVLSVIETGNGVMISGIDTARLGEHLD
TLTAHWVAKRERFIANDPAVGFYKKLFRLKFVYDHLTAVYTDRYNVYQAA
YVDSAYTVRAVLCFVMQVISSLALIDDGGISLRTSRHGGVDAVLVVVTVM
YMYFNLPANSITSSMSHNCVLFNIFAKMKMYRRLIFVAMDLVVNSFLISL
MPLISARLLNETTGSASIVTTFLSVFFVTSLDDTAVTKSESNNMRDSQSA
LLRDVTEKVDSFVDSRYMWVVAYLPWFESLLVFGSVVASYFVLFNA*
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mRNA from alignment at P-littoralis_Contig15:108024..109064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.30.1 ID=mRNA_P-littoralis_Contig15.30.1|Name=mRNA_P-littoralis_Contig15.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-littoralis_Contig15:108024..109064+ (Pylaiella littoralis U1_48)
AAGCACCTGCACGAAGAATCGCTAGACTTCCGTGTCCTGACACCCTCGGA
TGAAGATAGCATCGTGGTCAAAGGCGTAAAGTTTTTGATGAGCCAGTTGT
TTTCGTCCGTTCGCCTAACGATCGTGCACTCACGAGTCCTGAGGAGGTTC
TTGTCCCTCGAAGGTTGCCCGGGAGAGGACACACTGAAACAGTTCCAGGG
GATGATTGGCAACGACGAGACGGTTCTGAGTGTCATCGAAACCGGCAACG
GCGTGATGATATCTGGCATCGACACGGCAAGGCTCGGGGAACACCTGGAC
ACTCTGACGGCGCACTGGGTGGCAAAGCGAGAGCGGTTCATCGCCAACGA
TCCCGCCGTCGGGTTTTACAAGAAGTTGTTTCGTTTGAAATTTGTCTACG
ATCATCTGACCGCGGTGTACACGGACAGGTACAACGTCTACCAGGCCGCG
TACGTTGATTCCGCCTATACAGTGAGAGCAGTCCTGTGTTTCGTGATGCA
GGTGATTTCTTCACTGGCACTCATCGACGACGGCGGAATATCTCTCAGGA
CTAGCCGTCACGGTGGAGTAGATGCCGTGCTCGTAGTCGTGACAGTCATG
TACATGTATTTCAATCTACCGGCAAACTCGATCACCTCGAGCATGAGCCA
CAACTGCGTGCTTTTCAACATCTTCGCCAAGATGAAGATGTACCGGCGGC
TGATCTTCGTGGCGATGGACCTCGTTGTGAACTCCTTCCTCATTTCCCTC
ATGCCCCTGATATCCGCAAGACTGTTGAACGAAACAACCGGTTCCGCAAG
CATAGTGACGACGTTTCTCTCTGTTTTTTTCGTCACAAGCCTAGACGACA
CCGCGGTGACCAAGAGCGAGTCGAACAACATGCGCGACTCACAGAGCGCC
TTGTTGCGCGATGTCACGGAAAAGGTCGATTCTTTCGTCGACTCCCGCTA
CATGTGGGTCGTGGCATACCTGCCCTGGTTTGAAAGCCTGCTCGTTTTCG
GCTCCGTCGTGGCGTCGTACTTCGTGCTGTTTAACGCCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:108024..109064+

>mRNA_P-littoralis_Contig15.30.1 ID=mRNA_P-littoralis_Contig15.30.1|Name=mRNA_P-littoralis_Contig15.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1041bp|location=Sequence derived from alignment at P-littoralis_Contig15:108024..109064+ (Pylaiella littoralis U1_48)
AAGCACCTGCACGAAGAATCGCTAGACTTCCGTGTCCTGACACCCTCGGA
TGAAGATAGCATCGTGGTCAAAGGCGTAAAGTTTTTGATGAGCCAGTTGT
TTTCGTCCGTTCGCCTAACGATCGTGCACTCACGAGTCCTGAGGAGGTTC
TTGTCCCTCGAAGGTTGCCCGGGAGAGGACACACTGAAACAGTTCCAGGG
GATGATTGGCAACGACGAGACGGTTCTGAGTGTCATCGAAACCGGCAACG
GCGTGATGATATCTGGCATCGACACGGCAAGGCTCGGGGAACACCTGGAC
ACTCTGACGGCGCACTGGGTGGCAAAGCGAGAGCGGTTCATCGCCAACGA
TCCCGCCGTCGGGTTTTACAAGAAGTTGTTTCGTTTGAAATTTGTCTACG
ATCATCTGACCGCGGTGTACACGGACAGGTACAACGTCTACCAGGCCGCG
TACGTTGATTCCGCCTATACAGTGAGAGCAGTCCTGTGTTTCGTGATGCA
GGTGATTTCTTCACTGGCACTCATCGACGACGGCGGAATATCTCTCAGGA
CTAGCCGTCACGGTGGAGTAGATGCCGTGCTCGTAGTCGTGACAGTCATG
TACATGTATTTCAATCTACCGGCAAACTCGATCACCTCGAGCATGAGCCA
CAACTGCGTGCTTTTCAACATCTTCGCCAAGATGAAGATGTACCGGCGGC
TGATCTTCGTGGCGATGGACCTCGTTGTGAACTCCTTCCTCATTTCCCTC
ATGCCCCTGATATCCGCAAGACTGTTGAACGAAACAACCGGTTCCGCAAG
CATAGTGACGACGTTTCTCTCTGTTTTTTTCGTCACAAGCCTAGACGACA
CCGCGGTGACCAAGAGCGAGTCGAACAACATGCGCGACTCACAGAGCGCC
TTGTTGCGCGATGTCACGGAAAAGGTCGATTCTTTCGTCGACTCCCGCTA
CATGTGGGTCGTGGCATACCTGCCCTGGTTTGAAAGCCTGCTCGTTTTCG
GCTCCGTCGTGGCGTCGTACTTCGTGCTGTTTAACGCCTGA
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