mRNA_P-littoralis_Contig15.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.28.1
Unique NamemRNA_P-littoralis_Contig15.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.28.1 vs. uniprot
Match: Q8QNE3_ESV1K (EsV-1-136 n=2 Tax=root TaxID=1 RepID=Q8QNE3_ESV1K)

HSP 1 Score: 150 bits (380), Expect = 2.990e-45
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    1 MVPDLGVEVPTVPVPNVLSSEQYQAIPAWTYKKFELADLLYSKVGISAATSLSAFSILSVLNPPFVQERSDNPVEINKPSVTVLYSISLLVFVFMMVVPV 300
            MVPDLGV+ P V VPN  S+EQYQ IPAWTY+KF+L DL YSKVGISA T+L  FS+LSVLNPPFVQE+SDNP+EI+KPS T+LY ISL  F+FMM+VPV
Sbjct:   18 MVPDLGVDTPIVRVPNTFSNEQYQEIPAWTYRKFQLTDLFYSKVGISATTALCTFSVLSVLNPPFVQEKSDNPIEISKPSFTILYCISLFAFLFMMIVPV 117
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BLAST of mRNA_P-littoralis_Contig15.28.1 vs. uniprot
Match: B5LWI9_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWI9_9PHYC)

HSP 1 Score: 72.0 bits (175), Expect = 2.830e-14
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   28 PTVPVPNVLSSEQYQAIPAWTYKKFELADLLYSKVGISAATSLSAFSILSVLNPPFVQERSDNPVEINKPS 240
            P + VP+ +S  +   IP WTYK+FE+ DLL+SK+GI+AAT + +F IL  +NPPFVQ    + +E+ +PS
Sbjct:   16 PELVVPDAVSGNK---IPDWTYKEFEVLDLLHSKIGIAAATGILSFGILVFINPPFVQTSEGSGIEVRRPS 83
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BLAST of mRNA_P-littoralis_Contig15.28.1 vs. uniprot
Match: Q6XM65_9PHYC (FirrV-1-A22 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM65_9PHYC)

HSP 1 Score: 67.4 bits (163), Expect = 1.110e-12
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:   85 WTYKKFELADLLYSKVGISAATSLSAFSILSVLNPPFVQERSDNPVEINKPSVTVLYSISLLVFVFMMVV 294
            W+YKKFE  D+ +SK+GI+  TS+  F IL+ +NPPFVQE + + ++I++PS+  + S+S + F  ++ V
Sbjct:   12 WSYKKFEFTDIFHSKMGIAVTTSVLTFGILAYINPPFVQENNGSKLQIHRPSIHKIGSLSAVSFCILLFV 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNE3_ESV1K2.990e-4573.00EsV-1-136 n=2 Tax=root TaxID=1 RepID=Q8QNE3_ESV1K[more]
B5LWI9_9PHYC2.830e-1447.89Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM65_9PHYC1.110e-1242.86FirrV-1-A22 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:105365..105670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-136
Ec32 orthologEc-06_005490.1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.956892-CDS-P-littoralis_Contig15:105364..1056701680789709.956892-CDS-P-littoralis_Contig15:105364..105670Pylaiella littoralis U1_48CDSP-littoralis_Contig15 105365..105670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.28.1prot_P-littoralis_Contig15.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 105365..105670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.28.1

>prot_P-littoralis_Contig15.28.1 ID=prot_P-littoralis_Contig15.28.1|Name=mRNA_P-littoralis_Contig15.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MVPDLGVEVPTVPVPNVLSSEQYQAIPAWTYKKFELADLLYSKVGISAAT
SLSAFSILSVLNPPFVQERSDNPVEINKPSVTVLYSISLLVFVFMMVVPV
S*
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mRNA from alignment at P-littoralis_Contig15:105365..105670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.28.1 ID=mRNA_P-littoralis_Contig15.28.1|Name=mRNA_P-littoralis_Contig15.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig15:105365..105670+ (Pylaiella littoralis U1_48)
ATGGTGCCCGACCTCGGCGTTGAGGTTCCGACGGTGCCGGTCCCGAACGT
GTTGTCGAGCGAGCAGTACCAGGCGATACCGGCGTGGACGTACAAGAAGT
TCGAGCTCGCCGACCTGTTGTACTCGAAGGTCGGTATATCGGCCGCGACG
TCTCTGTCGGCATTCTCCATCCTGTCGGTCTTGAACCCTCCGTTTGTCCA
GGAGAGAAGCGACAATCCGGTGGAAATCAACAAGCCCAGCGTTACCGTTC
TGTACAGCATATCTCTCCTTGTGTTTGTTTTCATGATGGTCGTGCCCGTG
TCTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:105365..105670+

>mRNA_P-littoralis_Contig15.28.1 ID=mRNA_P-littoralis_Contig15.28.1|Name=mRNA_P-littoralis_Contig15.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig15:105365..105670+ (Pylaiella littoralis U1_48)
ATGGTGCCCGACCTCGGCGTTGAGGTTCCGACGGTGCCGGTCCCGAACGT
GTTGTCGAGCGAGCAGTACCAGGCGATACCGGCGTGGACGTACAAGAAGT
TCGAGCTCGCCGACCTGTTGTACTCGAAGGTCGGTATATCGGCCGCGACG
TCTCTGTCGGCATTCTCCATCCTGTCGGTCTTGAACCCTCCGTTTGTCCA
GGAGAGAAGCGACAATCCGGTGGAAATCAACAAGCCCAGCGTTACCGTTC
TGTACAGCATATCTCTCCTTGTGTTTGTTTTCATGATGGTCGTGCCCGTG
TCTTGA
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