mRNA_P-littoralis_Contig15.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.27.1
Unique NamemRNA_P-littoralis_Contig15.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.27.1 vs. uniprot
Match: Q8QNE2_ESV1K (EsV-1-137 n=2 Tax=root TaxID=1 RepID=Q8QNE2_ESV1K)

HSP 1 Score: 210 bits (534), Expect = 1.240e-67
Identity = 102/135 (75.56%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:    1 MASTLDKIVHVEEEIAERGAENWGYEFPVVNQQYCLMSIVDCGEPSKPAAVKVFGCYPTLEAANAAAATISSACDFFHVYVCPTNAWVPVPPSAEFVENVTYQESRMREIQEAFVALNERKAQEVIRTLNKESKI 405
            MAS+L+K VHVEE I ER AE W Y+F VVNQQ+CLMSIVDC +P KPAA+KVFGCYP+++AANAAAA ISS CDFFHVYVCPTNAWVPVPPS +F+ENV YQESRM+EIQE F AL +RKAQ+VIR LNKES++
Sbjct:    1 MASSLEKQVHVEEHIPERCAEQWDYQFSVVNQQHCLMSIVDCEDPQKPAAIKVFGCYPSVDAANAAAAKISSECDFFHVYVCPTNAWVPVPPSPDFIENVQYQESRMKEIQETFAALKDRKAQDVIRHLNKESEV 135
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BLAST of mRNA_P-littoralis_Contig15.27.1 vs. uniprot
Match: Q6XLT3_9PHYC (FirrV-1-O1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT3_9PHYC)

HSP 1 Score: 118 bits (296), Expect = 1.500e-31
Identity = 58/125 (46.40%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:   22 IVHVEEEIAERGAENWGYEFPVVNQQYCLMSIVDCGEPSK-PAAVKVFGCYPTLEAANAAAATISSACDFFHVYVCPTNAWVPVPPSAEFVENVTYQESRMREIQEAFVALNERKAQEVIRTLNK 393
            + H+E +IA+R  E WGY++ V +Q + L+SI D    S  P+A+KVFG Y TL+ AN AA  IS+  DFF VYV  TNAW+P+PPS++F+E+V YQE R+++I++ F  + +R A ++ R + K
Sbjct:    6 VTHIESDIAQRSDEAWGYQYHVRDQNFVLLSICDNESSSDCPSAIKVFGTYRTLDEANRAAGVISNENDFFDVYVADTNAWLPIPPSSKFIEDVRYQEERLKDIKDTFTKMKDRNANQMRRQITK 130
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BLAST of mRNA_P-littoralis_Contig15.27.1 vs. uniprot
Match: B5LWJ0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ0_9PHYC)

HSP 1 Score: 118 bits (295), Expect = 2.690e-31
Identity = 62/135 (45.93%), Postives = 84/135 (62.22%), Query Frame = 1 
Query:   16 DKIVHVEEEIAERGAENWGYEFPVVNQQYCLMSIVDCGEPSKPAAVKVFGCYPTLEAANAAAATISSACDFFHVYVCPTNAWVPVPPSAEFVENVTYQESRMREIQEAFVALNERKAQEVIRTLNKESKISSSAP 420
            +   HVE++I ER  + W Y++ V +Q Y ++ I  C     P+AVK+FG Y TLE AN AA  IS+  DFF VYV  TNAWVP+PPS EFVE V YQE RM EI++ F+ + +R A ++ R +        +AP
Sbjct:    4 ESYTHVEQDIQERSDDAWSYQYTVPHQNYVVLFI--CENSPGPSAVKIFGAYRTLEDANRAADKISNEMDFFDVYVADTNAWVPIPPSQEFVEEVEYQEKRMSEIKDTFIKMKQRDAAQMRRRIETSKSSDVAAP 136
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNE2_ESV1K1.240e-6775.56EsV-1-137 n=2 Tax=root TaxID=1 RepID=Q8QNE2_ESV1K[more]
Q6XLT3_9PHYC1.500e-3146.40FirrV-1-O1 n=1 Tax=Feldmannia irregularis virus a ... [more]
B5LWJ0_9PHYC2.690e-3145.93Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:104714..105145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-137
Ec32 orthologEc-06_005480.1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.9244215-CDS-P-littoralis_Contig15:104713..1051451680789709.9244215-CDS-P-littoralis_Contig15:104713..105145Pylaiella littoralis U1_48CDSP-littoralis_Contig15 104714..105145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.27.1prot_P-littoralis_Contig15.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 104714..105145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.27.1

>prot_P-littoralis_Contig15.27.1 ID=prot_P-littoralis_Contig15.27.1|Name=mRNA_P-littoralis_Contig15.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MASTLDKIVHVEEEIAERGAENWGYEFPVVNQQYCLMSIVDCGEPSKPAA
VKVFGCYPTLEAANAAAATISSACDFFHVYVCPTNAWVPVPPSAEFVENV
TYQESRMREIQEAFVALNERKAQEVIRTLNKESKISSSAPVET*
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mRNA from alignment at P-littoralis_Contig15:104714..105145-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.27.1 ID=mRNA_P-littoralis_Contig15.27.1|Name=mRNA_P-littoralis_Contig15.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig15:104714..105145- (Pylaiella littoralis U1_48)
ATGGCGTCCACTCTAGACAAAATCGTGCACGTCGAGGAAGAGATCGCCGA
ACGGGGTGCCGAAAACTGGGGCTACGAGTTTCCCGTAGTGAACCAGCAAT
ACTGTCTCATGTCCATCGTCGACTGCGGAGAGCCCAGCAAACCGGCCGCC
GTGAAAGTTTTCGGGTGCTACCCGACCCTAGAGGCAGCGAACGCGGCGGC
GGCCACGATAAGCTCGGCGTGCGACTTCTTTCACGTCTACGTCTGTCCAA
CCAACGCGTGGGTACCCGTCCCACCGTCGGCCGAGTTCGTTGAGAACGTA
ACGTACCAGGAGTCCAGGATGAGGGAAATTCAGGAAGCGTTCGTGGCCCT
CAATGAGCGCAAGGCGCAGGAAGTTATCCGTACTCTGAACAAGGAGTCGA
AAATAAGTTCGAGCGCTCCCGTCGAAACATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:104714..105145-

>mRNA_P-littoralis_Contig15.27.1 ID=mRNA_P-littoralis_Contig15.27.1|Name=mRNA_P-littoralis_Contig15.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig15:104714..105145- (Pylaiella littoralis U1_48)
ATGGCGTCCACTCTAGACAAAATCGTGCACGTCGAGGAAGAGATCGCCGA
ACGGGGTGCCGAAAACTGGGGCTACGAGTTTCCCGTAGTGAACCAGCAAT
ACTGTCTCATGTCCATCGTCGACTGCGGAGAGCCCAGCAAACCGGCCGCC
GTGAAAGTTTTCGGGTGCTACCCGACCCTAGAGGCAGCGAACGCGGCGGC
GGCCACGATAAGCTCGGCGTGCGACTTCTTTCACGTCTACGTCTGTCCAA
CCAACGCGTGGGTACCCGTCCCACCGTCGGCCGAGTTCGTTGAGAACGTA
ACGTACCAGGAGTCCAGGATGAGGGAAATTCAGGAAGCGTTCGTGGCCCT
CAATGAGCGCAAGGCGCAGGAAGTTATCCGTACTCTGAACAAGGAGTCGA
AAATAAGTTCGAGCGCTCCCGTCGAAACATAA
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