mRNA_P-littoralis_Contig15.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.24.1
Unique NamemRNA_P-littoralis_Contig15.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.24.1 vs. uniprot
Match: D8LPG6_ECTSI (EsV-1-140 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPG6_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 1.170e-85
Identity = 131/245 (53.47%), Postives = 172/245 (70.20%), Query Frame = 1 
Query:    7 RCKRTRAYSDSYRGMTASSARAWNRRVGNTEWYRWNKDALVATFVLNHLVGRIQRMYRHRA-------DAMRNRACPISLVAISDIPVGNRFRHVNSWFDRAVLAQHIHQTSDFFNPVTRVEFREDDVLRIDPKLVDRFRNRKKIRARFTADVALVQTIENELEEIFSCMVNASQQIPSMLEFTVVLDSLMGAFQQCHRDLLRLDDARSGLCLKSLRDFVEGDPNRPVHMPSKRKSILLHFLRSQ 720
            +CK+T AY+ +Y+ MT +SA+  NRR+G  +WYR  KDALVAT VLNH    IQR +RH         D  R   CPISL  I++IP G+RFRH N WF++  LAQ++ +TSDF NPVTRVE RE+DVL++DP L+ ++R+RK++  R   D+ALVQ++ENELEE+F  MV A+Q+I + +EF +V D L   FQ+CH DL  LD  RS L LKSL D V+GDP R VHM  KR+ IL HFL++Q
Sbjct:   29 KCKKTPAYASAYKAMTLASAKQANRRIGTADWYRLKKDALVATIVLNHFAEEIQRFFRHVVVTTRDSDDDARTAVCPISLKPITEIPCGHRFRHGNIWFNKDTLAQYMRKTSDFMNPVTRVELREEDVLKVDPGLIKQYRHRKELAERMAEDMALVQSVENELEEVFQDMVEAAQEIRTRMEFRIVFDHLAEDFQECHGDLTELDRDRSVLTLKSLGDLVDGDPTRRVHMSKKRERILRHFLKTQ 273
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BLAST of mRNA_P-littoralis_Contig15.24.1 vs. uniprot
Match: Q8QND9_ESV1K (EsV-1-140 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND9_ESV1K)

HSP 1 Score: 264 bits (675), Expect = 1.550e-85
Identity = 133/246 (54.07%), Postives = 175/246 (71.14%), Query Frame = 1 
Query:    7 RCKRTRAYSDSYRGMTASSARAWNRRVGNTEWYRWNKDALVATFVLNHLVGRIQRMYR-------HRADAMRNRA-CPISLVAISDIPVGNRFRHVNSWFDRAVLAQHIHQTSDFFNPVTRVEFREDDVLRIDPKLVDRFRNRKKIRARFTADVALVQTIENELEEIFSCMVNASQQIPSMLEFTVVLDSLMGAFQQCHRDLLRLDDARSGLCLKSLRDFVEGDPNRPVHMPSKRKSILLHFLRSQ 720
            +CK+T AY+ +Y+ MT  SA+  NRR+G   WYR  KDALVAT VLNH    IQR +R       H  D   N A CPISL  I++IP G+RFRH N WF++ +LAQ++ +TSDF NPVTRVE RE+DVLRIDP L++++++R++  AR   D+A+VQ++ENELEE+F  MV A+Q+IP+ +EF +V D+L   FQQCH DL  LD  RS L +KSL D V+GDP R VHM  KR+ IL HFL++Q
Sbjct:   29 KCKKTPAYASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVLNHFAQEIQRFFRRVVVVTTHDGDDDTNTAVCPISLKPIAEIPCGHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDPGLINQYKHRREHVARMAEDMAVVQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDLTELDRDRSALTMKSLGDLVDGDPTRRVHMSKKRERILRHFLKTQ 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPG6_ECTSI1.170e-8553.47EsV-1-140 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QND9_ESV1K1.550e-8554.07EsV-1-140 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:101627..102352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size726
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-140
Ec32 orthologEc-06_005450.1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.8102252-CDS-P-littoralis_Contig15:101626..1023521680789709.8102252-CDS-P-littoralis_Contig15:101626..102352Pylaiella littoralis U1_48CDSP-littoralis_Contig15 101627..102352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.24.1prot_P-littoralis_Contig15.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 101627..102352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.24.1

>prot_P-littoralis_Contig15.24.1 ID=prot_P-littoralis_Contig15.24.1|Name=mRNA_P-littoralis_Contig15.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=242bp
MKRCKRTRAYSDSYRGMTASSARAWNRRVGNTEWYRWNKDALVATFVLNH
LVGRIQRMYRHRADAMRNRACPISLVAISDIPVGNRFRHVNSWFDRAVLA
QHIHQTSDFFNPVTRVEFREDDVLRIDPKLVDRFRNRKKIRARFTADVAL
VQTIENELEEIFSCMVNASQQIPSMLEFTVVLDSLMGAFQQCHRDLLRLD
DARSGLCLKSLRDFVEGDPNRPVHMPSKRKSILLHFLRSQV*
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mRNA from alignment at P-littoralis_Contig15:101627..102352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.24.1 ID=mRNA_P-littoralis_Contig15.24.1|Name=mRNA_P-littoralis_Contig15.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=726bp|location=Sequence derived from alignment at P-littoralis_Contig15:101627..102352- (Pylaiella littoralis U1_48)
ATGAAAAGGTGCAAACGAACCAGAGCGTACTCGGACTCCTACCGGGGGAT
GACCGCGTCCTCGGCGAGGGCGTGGAACAGGAGGGTCGGCAACACGGAAT
GGTACCGGTGGAACAAAGACGCACTCGTGGCCACGTTCGTGCTCAACCAT
CTCGTCGGAAGGATCCAACGCATGTACAGGCACAGAGCCGACGCGATGCG
GAACAGGGCTTGCCCGATATCTCTCGTTGCGATCTCGGATATACCCGTGG
GCAACAGGTTCAGGCACGTCAACTCCTGGTTCGACAGGGCCGTCCTCGCG
CAGCACATTCATCAGACGAGCGATTTCTTCAACCCCGTCACCAGGGTGGA
GTTTCGCGAGGACGACGTGCTTCGAATCGATCCGAAGCTCGTCGACAGAT
TCAGGAACAGGAAGAAAATCAGGGCGCGTTTCACCGCGGACGTGGCGCTG
GTACAGACCATAGAGAACGAGCTCGAAGAGATTTTTAGTTGCATGGTAAA
CGCCAGCCAGCAGATACCCTCCATGTTGGAGTTTACGGTAGTTTTGGACA
GCCTGATGGGAGCCTTTCAGCAGTGCCACCGCGACCTGCTGCGCCTGGAC
GACGCCCGGTCGGGCCTCTGCCTGAAATCTCTCAGGGATTTCGTTGAGGG
TGATCCAAACCGCCCCGTCCACATGCCTTCCAAACGAAAGAGCATTCTTT
TGCACTTCCTGCGAAGCCAAGTGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:101627..102352-

>mRNA_P-littoralis_Contig15.24.1 ID=mRNA_P-littoralis_Contig15.24.1|Name=mRNA_P-littoralis_Contig15.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=726bp|location=Sequence derived from alignment at P-littoralis_Contig15:101627..102352- (Pylaiella littoralis U1_48)
ATGAAAAGGTGCAAACGAACCAGAGCGTACTCGGACTCCTACCGGGGGAT
GACCGCGTCCTCGGCGAGGGCGTGGAACAGGAGGGTCGGCAACACGGAAT
GGTACCGGTGGAACAAAGACGCACTCGTGGCCACGTTCGTGCTCAACCAT
CTCGTCGGAAGGATCCAACGCATGTACAGGCACAGAGCCGACGCGATGCG
GAACAGGGCTTGCCCGATATCTCTCGTTGCGATCTCGGATATACCCGTGG
GCAACAGGTTCAGGCACGTCAACTCCTGGTTCGACAGGGCCGTCCTCGCG
CAGCACATTCATCAGACGAGCGATTTCTTCAACCCCGTCACCAGGGTGGA
GTTTCGCGAGGACGACGTGCTTCGAATCGATCCGAAGCTCGTCGACAGAT
TCAGGAACAGGAAGAAAATCAGGGCGCGTTTCACCGCGGACGTGGCGCTG
GTACAGACCATAGAGAACGAGCTCGAAGAGATTTTTAGTTGCATGGTAAA
CGCCAGCCAGCAGATACCCTCCATGTTGGAGTTTACGGTAGTTTTGGACA
GCCTGATGGGAGCCTTTCAGCAGTGCCACCGCGACCTGCTGCGCCTGGAC
GACGCCCGGTCGGGCCTCTGCCTGAAATCTCTCAGGGATTTCGTTGAGGG
TGATCCAAACCGCCCCGTCCACATGCCTTCCAAACGAAAGAGCATTCTTT
TGCACTTCCTGCGAAGCCAAGTGTAA
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