mRNA_P-littoralis_Contig15.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.22.1
Unique NamemRNA_P-littoralis_Contig15.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.22.1 vs. uniprot
Match: D8LPH1_ECTSI (EsV-1-149 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH1_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 6.870e-81
Identity = 139/264 (52.65%), Postives = 172/264 (65.15%), Query Frame = 1 
Query:    1 MIAIVALPKDVLHTVLGFTKTDSYFMVGSVCKAFRDQFLPREKTTRTSKFTQSLALFDLAVALNVSFVSASLLDDLISRDEIEVIPRALSRAGVAWDHFCVERAAEVGSFRFFRWL-----TTTELVWLPENAHFSAASAGDLGMMRFLVEIGAGFPDQRSFHAAAERRDHAIVDWLHELELDRSYTMTRAARDDSVDAFAQS-SGDDDGAE--YITQACIHGSFDVLEYFRCSVGRGPTAKDCNMAAQLQRWDVVGWFSEFFP 768
            M+ ++ + KD L  +L F K DSY ++G VC+ FR+ +   E+ TRTSK+TQSL LF  A A N+ F S  LLDDLISRDEI+VIP  L+R G  WDHFCV+RAAE  S+RFFRWL     T   L WL ENAH +AA  G+L MM +LVE GAGFPD  S    A  RD  IV+WL EL LD ++   +AAR+D V  F Q+ S DD G    YI +ACIHG+F+VLE+FR  VG GPT  D   A   Q  D++ W+ EFFP
Sbjct:    1 MLHLLLISKDALQHILSFVKADSYAIIGPVCRDFRNCYGSGERVTRTSKYTQSLQLFRQATATNIEFRSLCLLDDLISRDEIDVIPPLLTR-GYEWDHFCVQRAAETNSYRFFRWLQWLQTTDDGLPWLVENAHRAAAKEGNLEMMIYLVESGAGFPDSGSL---AVTRDCKIVEWLRELRLDPAHAFVKAAREDDVCVFEQTESFDDHGLNRMYIKEACIHGAFNVLEFFRVFVGVGPTPSDVAWALHFQTEDILDWYREFFP 260
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BLAST of mRNA_P-littoralis_Contig15.22.1 vs. uniprot
Match: Q8QND3_ESV1K (EsV-1-149 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND3_ESV1K)

HSP 1 Score: 249 bits (635), Expect = 1.230e-78
Identity = 131/254 (51.57%), Postives = 167/254 (65.75%), Query Frame = 1 
Query:   19 LPKDVLHTVLGFTKTDSYFMVGSVCKAFRDQFLPREKTTRTSKFTQSLALFDLAVALNVSFVSASLLDDLISRDEIEVIPRALSRAGVAWDHFCVERAAEVGSFRFFRWLTTTE-LVWLPENAHFSAASAGDLGMMRFLVEIGAGFPDQRSFHAAAERRDHAIVDWLHELELDRSYTMTRAARDDSVDAFAQSSGDDD---GAEYITQACIHGSFDVLEYFRCSVGRGPTAKDCNMAAQLQRWDVVGWFSEFFP 768
            LPKD L  +L F K DS+ ++GSVC+ FR+ +   E+ TRTSK+TQSL LF  A A N+ F S  LLDDLISRDEI+VIP  L+R G  WDHFCV+RAAE  +++FF+WL TT+ L WL ENAH +AA  G+L MM +LV+ GAGFPD  S    A   D  IV+WL EL+LD ++   RAAR+D V  F Q+   DD       + +AC+HG+F+VLE+FR  V  GPT  D   A   Q  D++ W  EFFP
Sbjct:   54 LPKDTLQHILSFVKEDSFAIIGSVCRDFRNCYGSGERVTRTSKYTQSLRLFQQATAKNIEFKSLGLLDDLISRDEIDVIPSLLAR-GYEWDHFCVQRAAETNNYKFFQWLQTTDDLPWLVENAHRAAAKEGNLEMMIYLVDSGAGFPDSGS---RAVTNDCKIVEWLRELQLDPAHAFVRAAREDDVCVFEQTESFDDHGLNRACVREACVHGAFNVLEFFRVFVDVGPTVSDVAAALHFQTVDILDWCREFFP 303
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPH1_ECTSI6.870e-8152.65EsV-1-149 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QND3_ESV1K1.230e-7851.57EsV-1-149 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:96635..97402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size768
Hectar predicted targeting categoryother localisation
Exons1
Cds size768
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.699297-CDS-P-littoralis_Contig15:96634..974021680789709.699297-CDS-P-littoralis_Contig15:96634..97402Pylaiella littoralis U1_48CDSP-littoralis_Contig15 96635..97402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.22.1prot_P-littoralis_Contig15.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 96635..97402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.22.1

>prot_P-littoralis_Contig15.22.1 ID=prot_P-littoralis_Contig15.22.1|Name=mRNA_P-littoralis_Contig15.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
MIAIVALPKDVLHTVLGFTKTDSYFMVGSVCKAFRDQFLPREKTTRTSKF
TQSLALFDLAVALNVSFVSASLLDDLISRDEIEVIPRALSRAGVAWDHFC
VERAAEVGSFRFFRWLTTTELVWLPENAHFSAASAGDLGMMRFLVEIGAG
FPDQRSFHAAAERRDHAIVDWLHELELDRSYTMTRAARDDSVDAFAQSSG
DDDGAEYITQACIHGSFDVLEYFRCSVGRGPTAKDCNMAAQLQRWDVVGW
FSEFFP
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mRNA from alignment at P-littoralis_Contig15:96635..97402-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.22.1 ID=mRNA_P-littoralis_Contig15.22.1|Name=mRNA_P-littoralis_Contig15.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig15:96635..97402- (Pylaiella littoralis U1_48)
ATGATCGCGATCGTCGCCCTGCCCAAGGACGTCCTGCACACCGTTCTCGG
ATTCACCAAGACCGACTCCTACTTCATGGTCGGCTCGGTGTGCAAGGCGT
TCCGAGACCAGTTCTTGCCACGGGAAAAAACGACCAGGACGTCCAAGTTC
ACGCAGTCCCTGGCGCTCTTCGACCTGGCTGTCGCGCTCAACGTCTCCTT
CGTGAGCGCCTCTCTCCTGGACGACCTCATCTCGCGCGACGAGATCGAGG
TTATACCGCGGGCGTTGTCTCGAGCCGGAGTCGCGTGGGACCACTTCTGC
GTCGAACGCGCGGCAGAGGTGGGATCGTTCCGCTTTTTTCGCTGGCTGAC
GACGACGGAGCTCGTGTGGCTTCCCGAGAACGCGCACTTCTCGGCGGCGA
GCGCGGGGGACCTCGGCATGATGAGGTTCTTGGTGGAAATCGGCGCGGGT
TTCCCGGACCAGAGATCGTTCCACGCGGCCGCAGAGCGCCGGGACCACGC
CATCGTCGACTGGCTCCACGAGCTCGAGCTCGACCGTTCCTACACCATGA
CCAGGGCCGCCAGGGACGACAGCGTCGACGCGTTCGCACAGAGTTCCGGC
GACGACGATGGCGCCGAGTACATCACGCAAGCCTGCATCCACGGTTCCTT
TGACGTCCTCGAGTACTTTAGGTGCTCGGTCGGCCGTGGTCCGACCGCCA
AAGACTGTAACATGGCCGCCCAGCTTCAGCGCTGGGATGTCGTGGGTTGG
TTCTCGGAGTTTTTCCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:96635..97402-

>mRNA_P-littoralis_Contig15.22.1 ID=mRNA_P-littoralis_Contig15.22.1|Name=mRNA_P-littoralis_Contig15.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig15:96635..97402- (Pylaiella littoralis U1_48)
ATGATCGCGATCGTCGCCCTGCCCAAGGACGTCCTGCACACCGTTCTCGG
ATTCACCAAGACCGACTCCTACTTCATGGTCGGCTCGGTGTGCAAGGCGT
TCCGAGACCAGTTCTTGCCACGGGAAAAAACGACCAGGACGTCCAAGTTC
ACGCAGTCCCTGGCGCTCTTCGACCTGGCTGTCGCGCTCAACGTCTCCTT
CGTGAGCGCCTCTCTCCTGGACGACCTCATCTCGCGCGACGAGATCGAGG
TTATACCGCGGGCGTTGTCTCGAGCCGGAGTCGCGTGGGACCACTTCTGC
GTCGAACGCGCGGCAGAGGTGGGATCGTTCCGCTTTTTTCGCTGGCTGAC
GACGACGGAGCTCGTGTGGCTTCCCGAGAACGCGCACTTCTCGGCGGCGA
GCGCGGGGGACCTCGGCATGATGAGGTTCTTGGTGGAAATCGGCGCGGGT
TTCCCGGACCAGAGATCGTTCCACGCGGCCGCAGAGCGCCGGGACCACGC
CATCGTCGACTGGCTCCACGAGCTCGAGCTCGACCGTTCCTACACCATGA
CCAGGGCCGCCAGGGACGACAGCGTCGACGCGTTCGCACAGAGTTCCGGC
GACGACGATGGCGCCGAGTACATCACGCAAGCCTGCATCCACGGTTCCTT
TGACGTCCTCGAGTACTTTAGGTGCTCGGTCGGCCGTGGTCCGACCGCCA
AAGACTGTAACATGGCCGCCCAGCTTCAGCGCTGGGATGTCGTGGGTTGG
TTCTCGGAGTTTTTCCCG
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