mRNA_P-littoralis_Contig15.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.19.1
Unique NamemRNA_P-littoralis_Contig15.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.19.1 vs. uniprot
Match: Q8QNA0_ESV1K (EsV-1-188 n=2 Tax=root TaxID=1 RepID=Q8QNA0_ESV1K)

HSP 1 Score: 584 bits (1506), Expect = 4.090e-206
Identity = 285/435 (65.52%), Postives = 346/435 (79.54%), Query Frame = 1 
Query:   13 LTCQTFEERMAANLASPCADPFRPVFPDAVAGYVAPAILFLGTTIIGYGLSTGRRWALSSFVQPSTQLAIMLLLMVCDHASSFWDHSRISDEEYCLTAFLASGTVDDAKGRLVFGGLGALLAAVSAYGVSRGSISVAATGIPFAAIMMYLCWSPQKFQSCRSNGLVTGCLAFGLDIMTLVGILETLPL----RDNDWHAPTVAYSAVISALFVVLVGRHSEYGRRVKGGSCAIDDEADVAAEKLVDRRPELYTGVAMSVTSIVFILYLKAKYSEVACCAVYPAVIWLVYDILTKLQVWKRGEALVGSAPHRSIVYCAVQILDVLLSSSSLISVMKDKGLLAAPSARSRGLFGHLSHLAGGSLTYIFSILRLVVALVSGGGNQVAPGSVKRLAEVVKLVGLNVVANLAPLVIDGRNLSFMLAGNPQNTLNVPCYVD 1305
            + C+T  ER AAN A PC   FRPVFP+A+AGYVAP +LFLG +++GYGLST R+WA+S  V PSTQ++IMLLLMV DH SSFWDHSR+S EEYCLT+ + S T+DD  GRLVFGGLG LL A +A+G+  GSI++AAT +PFA I  YLCWSPQKFQSCR+NGL TG LAFGLDIMT VGI+E L      +D  WH PTV Y  VISALFV L G +SEYG+RVK GSC I+DEAD AA+K  D+RPELYTGV MSVTS++F +YLK  +SE++CCA YPA+++L +D+L KLQVWKRGEALVG A HRS +Y  VQ LDV LSSSSL+S+M DKGLL    A+SRGL  H +HLAGGS+TY++++LRLVVAL+SGGGN +A GS+ RLAE+VKLV LNV ANL PL ID +N S++L+ +PQN LNVPC+VD
Sbjct:    3 MACETLAERQAANAAKPCKKAFRPVFPEAIAGYVAPGLLFLGCSVVGYGLSTRRKWAVSGLVSPSTQMSIMLLLMVADHGSSFWDHSRVSSEEYCLTSMITSKTLDDTIGRLVFGGLGTLLTAAAAHGMRSGSITLAATSVPFAMISYYLCWSPQKFQSCRNNGLFTGGLAFGLDIMTFVGIMEVLLQSSGNKDTSWHVPTVMYCVVISALFVALFGWNSEYGKRVKPGSCEINDEADEAADKQRDKRPELYTGVLMSVTSVMFYVYLKMSFSEISCCATYPALLFLGFDVLIKLQVWKRGEALVGDALHRSFIYLTVQALDVALSSSSLVSLMSDKGLLVGGVAKSRGLLTHAAHLAGGSMTYVWNVLRLVVALISGGGNGMAKGSINRLAEIVKLVSLNVAANLVPLFIDQKNSSYVLSASPQNDLNVPCHVD 437
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNA0_ESV1K4.090e-20665.52EsV-1-188 n=2 Tax=root TaxID=1 RepID=Q8QNA0_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:81480..82787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1308
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-188
Ec32 orthologEc-06_005040.1
Cds size1308
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.557312-CDS-P-littoralis_Contig15:81479..827871680789709.557312-CDS-P-littoralis_Contig15:81479..82787Pylaiella littoralis U1_48CDSP-littoralis_Contig15 81480..82787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.19.1prot_P-littoralis_Contig15.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 81480..82787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.19.1

>prot_P-littoralis_Contig15.19.1 ID=prot_P-littoralis_Contig15.19.1|Name=mRNA_P-littoralis_Contig15.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=436bp
MSGSLTCQTFEERMAANLASPCADPFRPVFPDAVAGYVAPAILFLGTTII
GYGLSTGRRWALSSFVQPSTQLAIMLLLMVCDHASSFWDHSRISDEEYCL
TAFLASGTVDDAKGRLVFGGLGALLAAVSAYGVSRGSISVAATGIPFAAI
MMYLCWSPQKFQSCRSNGLVTGCLAFGLDIMTLVGILETLPLRDNDWHAP
TVAYSAVISALFVVLVGRHSEYGRRVKGGSCAIDDEADVAAEKLVDRRPE
LYTGVAMSVTSIVFILYLKAKYSEVACCAVYPAVIWLVYDILTKLQVWKR
GEALVGSAPHRSIVYCAVQILDVLLSSSSLISVMKDKGLLAAPSARSRGL
FGHLSHLAGGSLTYIFSILRLVVALVSGGGNQVAPGSVKRLAEVVKLVGL
NVVANLAPLVIDGRNLSFMLAGNPQNTLNVPCYVD*
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mRNA from alignment at P-littoralis_Contig15:81480..82787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.19.1 ID=mRNA_P-littoralis_Contig15.19.1|Name=mRNA_P-littoralis_Contig15.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1308bp|location=Sequence derived from alignment at P-littoralis_Contig15:81480..82787+ (Pylaiella littoralis U1_48)
ATGTCGGGTTCCTTGACGTGCCAGACTTTCGAGGAACGCATGGCGGCCAA
CCTGGCGAGTCCGTGCGCCGACCCGTTCCGGCCGGTGTTCCCGGACGCGG
TCGCGGGTTACGTGGCTCCCGCCATTCTGTTTCTAGGGACAACAATCATC
GGGTACGGCCTGTCGACCGGGCGCAGGTGGGCGCTGTCCAGCTTCGTTCA
ACCGTCCACCCAGCTGGCCATCATGCTGCTCCTGATGGTCTGTGATCACG
CCTCGTCGTTTTGGGACCACTCGCGCATCTCCGACGAGGAGTACTGCCTG
ACCGCGTTCCTCGCGTCGGGCACGGTTGACGACGCGAAAGGGCGGTTGGT
CTTCGGCGGTCTTGGCGCTCTCTTGGCGGCCGTGTCGGCCTACGGTGTGT
CGAGGGGCTCGATCTCTGTGGCTGCCACGGGGATCCCCTTCGCGGCCATC
ATGATGTACCTCTGCTGGTCCCCGCAGAAGTTCCAGTCCTGTCGGTCAAA
CGGCCTGGTGACGGGGTGCCTAGCCTTTGGTCTGGATATCATGACCCTGG
TTGGCATCCTTGAGACTCTGCCTTTGCGGGACAACGATTGGCACGCGCCG
ACCGTGGCGTACTCTGCCGTGATCAGCGCCTTGTTTGTCGTTCTCGTCGG
TCGGCACAGCGAGTACGGGCGGAGAGTCAAGGGCGGATCGTGCGCCATCG
ACGACGAGGCCGATGTCGCGGCGGAGAAGTTGGTGGACCGAAGACCGGAG
CTCTACACCGGAGTCGCGATGAGCGTCACGAGCATCGTTTTCATCCTCTA
TCTCAAAGCCAAGTACAGCGAGGTGGCGTGCTGCGCCGTGTACCCGGCGG
TAATCTGGCTGGTGTACGACATCCTGACCAAGCTCCAGGTGTGGAAGAGA
GGTGAAGCCCTCGTGGGTAGCGCTCCGCACCGCAGCATCGTGTACTGTGC
CGTGCAGATCCTGGACGTTCTCCTGAGCTCTTCGAGTCTGATATCGGTGA
TGAAAGACAAGGGTCTCCTCGCGGCCCCATCGGCAAGGTCCCGTGGGCTT
TTCGGCCACCTGAGTCACCTCGCCGGCGGGTCCCTCACCTACATCTTTAG
CATTTTGAGGCTGGTGGTCGCTCTCGTGTCGGGGGGCGGGAACCAGGTCG
CGCCCGGATCTGTCAAGAGATTGGCGGAGGTCGTCAAGCTCGTGGGCCTG
AACGTGGTGGCCAATCTGGCCCCGTTGGTTATAGATGGGCGCAACCTTAG
CTTTATGTTGGCGGGAAACCCGCAGAACACGCTCAACGTGCCGTGCTACG
TAGATTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:81480..82787+

>mRNA_P-littoralis_Contig15.19.1 ID=mRNA_P-littoralis_Contig15.19.1|Name=mRNA_P-littoralis_Contig15.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1308bp|location=Sequence derived from alignment at P-littoralis_Contig15:81480..82787+ (Pylaiella littoralis U1_48)
ATGTCGGGTTCCTTGACGTGCCAGACTTTCGAGGAACGCATGGCGGCCAA
CCTGGCGAGTCCGTGCGCCGACCCGTTCCGGCCGGTGTTCCCGGACGCGG
TCGCGGGTTACGTGGCTCCCGCCATTCTGTTTCTAGGGACAACAATCATC
GGGTACGGCCTGTCGACCGGGCGCAGGTGGGCGCTGTCCAGCTTCGTTCA
ACCGTCCACCCAGCTGGCCATCATGCTGCTCCTGATGGTCTGTGATCACG
CCTCGTCGTTTTGGGACCACTCGCGCATCTCCGACGAGGAGTACTGCCTG
ACCGCGTTCCTCGCGTCGGGCACGGTTGACGACGCGAAAGGGCGGTTGGT
CTTCGGCGGTCTTGGCGCTCTCTTGGCGGCCGTGTCGGCCTACGGTGTGT
CGAGGGGCTCGATCTCTGTGGCTGCCACGGGGATCCCCTTCGCGGCCATC
ATGATGTACCTCTGCTGGTCCCCGCAGAAGTTCCAGTCCTGTCGGTCAAA
CGGCCTGGTGACGGGGTGCCTAGCCTTTGGTCTGGATATCATGACCCTGG
TTGGCATCCTTGAGACTCTGCCTTTGCGGGACAACGATTGGCACGCGCCG
ACCGTGGCGTACTCTGCCGTGATCAGCGCCTTGTTTGTCGTTCTCGTCGG
TCGGCACAGCGAGTACGGGCGGAGAGTCAAGGGCGGATCGTGCGCCATCG
ACGACGAGGCCGATGTCGCGGCGGAGAAGTTGGTGGACCGAAGACCGGAG
CTCTACACCGGAGTCGCGATGAGCGTCACGAGCATCGTTTTCATCCTCTA
TCTCAAAGCCAAGTACAGCGAGGTGGCGTGCTGCGCCGTGTACCCGGCGG
TAATCTGGCTGGTGTACGACATCCTGACCAAGCTCCAGGTGTGGAAGAGA
GGTGAAGCCCTCGTGGGTAGCGCTCCGCACCGCAGCATCGTGTACTGTGC
CGTGCAGATCCTGGACGTTCTCCTGAGCTCTTCGAGTCTGATATCGGTGA
TGAAAGACAAGGGTCTCCTCGCGGCCCCATCGGCAAGGTCCCGTGGGCTT
TTCGGCCACCTGAGTCACCTCGCCGGCGGGTCCCTCACCTACATCTTTAG
CATTTTGAGGCTGGTGGTCGCTCTCGTGTCGGGGGGCGGGAACCAGGTCG
CGCCCGGATCTGTCAAGAGATTGGCGGAGGTCGTCAAGCTCGTGGGCCTG
AACGTGGTGGCCAATCTGGCCCCGTTGGTTATAGATGGGCGCAACCTTAG
CTTTATGTTGGCGGGAAACCCGCAGAACACGCTCAACGTGCCGTGCTACG
TAGATTGA
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