mRNA_P-littoralis_Contig15.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.16.1
Unique NamemRNA_P-littoralis_Contig15.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: D8LPK1_ECTSI (EsV-1-182, RFC small subunit n=2 Tax=root TaxID=1 RepID=D8LPK1_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 8.950e-106
Identity = 190/325 (58.46%), Postives = 217/325 (66.77%), Query Frame = 1
Query:   19 PWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSKTLXXXXXXXXXXXIKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQLP-RACPASIADAAGEVPAAAFDELWSTACSGS--ASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDLCLVL 972
            PWVEKYRPRR+ DVV  D      VL+G+ +TGDLP+LLFHGPPGTGKTSTIL LAR L G+      ERVLE+NASDE    +V D+I  F K +            KLVILDEADTMT  AQ++LRRTMET +  TRFCLVCN  S II  LASRC  FRF  L P  MKGRLL ICE E +IFE  SRG LD IV SS GDMR AVNLLQT SQ   R  P S+ + AGEVP  AFD LWS   S S     + V  AV  FVGEGY VG+VL   Q   V S  + +A KAV+C ++ME  RCLNDGADEE+QLL++CLV+
Sbjct:    3 PWVEKYRPRRVKDVVHHDHLKR--VLKGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGE--ENMRERVLELNASDERGLDVVRDKIKTFCK-MSISSFQPGCPPFKLVILDEADTMTADAQSALRRTMETQAVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLTPESMKGRLLYICERENIIFENCSRGVLDAIVKSSRGDMRSAVNLLQTVSQQQHRVTPESVVEVAGEVPERAFDTLWSAVTSPSHLEHFEDVVDAVSTFVGEGYPVGKVLSEIQSRVVQSGELENADKAVICLELMETDRCLNDGADEELQLLNICLVV 322          
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: A0A6H5JEB4_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB4_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 2.130e-76
Identity = 155/334 (46.41%), Postives = 198/334 (59.28%), Query Frame = 1
Query:    7 APPV---PWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSKTLXXXXXXXXXXX---IKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQL---PRACPASIADAAGEVPAAAFDELWSTACSGSASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDLCLV 969
            APP    PWVEKYRP+ + DV   D  +    L+G+  TG LP+LLF+GPPGTGKTST+L LAR LFG     + +R+LE+NASDE    +V ++I  F++                 K++ILDEADTMTP AQ++LRRTMET+S  TRFCL+CN  + II+ LASRC  FRF  LG G M  RL  I   E V    D    L  IV  S GDMR+AV  +Q+ASQ        P  + D AG++PA   D LWS   SGS     + AAV  F+  GY +  +L   QE  V+ +T+ D  KA +C ++ E  RCL DG +EE+QLLDL  V
Sbjct:   22 APPARLQPWVEKYRPKTVDDVAHQD--EVTNTLKGAIATGVLPHLLFYGPPGTGKTSTVLALARTLFGP--DTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADG---LQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGS--YHKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHNKADICRRIAEADRCLIDGCNEELQLLDLASV 346          
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: A0A6P8VLL4_GYMAC (replication factor C subunit 4 n=5 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6P8VLL4_GYMAC)

HSP 1 Score: 234 bits (596), Expect = 3.060e-71
Identity = 149/328 (45.43%), Postives = 201/328 (61.28%), Query Frame = 1
Query:   16 VPWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSK--TLXXXXXXXXXXXIKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQLP---RACPASIADAAGEVPAAAFDELWSTACSGSASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDLCLVL 972
            VPWVEKYRP+ I DV    +E+ V VL+ S    DLPNLLF+GPPGTGKTSTIL  AR L+G     + +RVLE+NASDE    +V  ++ NF++                K++ILDEAD+MT  AQA+LRRTME  S +TRFCL+CN  S II+ L SRC  FRF+PL     + RLL ICE E + + ++S  AL   V  S GD+R+A+  LQ+A++L        ++I + AG VP    D L     SG+   + +  AV   V EGYA  ++LG+  E AV    ++D  K+V+  K+  VS+CL+DGADE +Q+L LC V+
Sbjct:   33 VPWVEKYRPKCIDDVAF--QEEVVAVLKKSVEGADLPNLLFYGPPGTGKTSTILAAARELYGPQL--YRQRVLELNASDERGIQVVRQKVKNFAQLTVAGSRQDGKPCPPFKIIILDEADSMTGPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLSNQIQEERLLDICEKESLKYSKESIAAL---VTVSEGDLRKAITFLQSAARLNMDREITESAIIEIAGVVPPKMIDGLLQICLSGT--FEKLEVAVRNMVDEGYAATQILGQLHE-AVIEHDLSDKQKSVITEKMAVVSKCLSDGADEYLQMLSLCSVI 350          
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: UPI00146C6517 (replication factor C subunit 4 n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146C6517)

HSP 1 Score: 234 bits (596), Expect = 3.060e-71
Identity = 149/328 (45.43%), Postives = 201/328 (61.28%), Query Frame = 1
Query:   16 VPWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSK--TLXXXXXXXXXXXIKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQLP---RACPASIADAAGEVPAAAFDELWSTACSGSASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDLCLVL 972
            VPWVEKYRP+ I DV    +E+ V VL+ S    DLPNLLF+GPPGTGKTSTIL  AR L+G     + +RVLE+NASDE    +V  ++ NF++                K++ILDEAD+MT  AQA+LRRTME  S +TRFCL+CN  S II+ L SRC  FRF+PL     + RLL ICE E + + ++S  AL   V  S GD+R+A+  LQ+A++L        ++I + AG VP    D L     SG+   + +  AV   V EGYA  ++LG+  E AV    ++D  K+V+  K+  VS+CL+DGADE +Q+L LC V+
Sbjct:   33 VPWVEKYRPKCIDDVAF--QEEVVAVLKKSVEGADLPNLLFYGPPGTGKTSTILAAARELYGPQL--YRQRVLELNASDERGIQVVRQKVKNFAQLTVAGSRQDGKPCPPFKIIILDEADSMTGPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLSNQIQEERLLDICEKESLKYSKESIAAL---VTVSEGDLRKAITFLQSAARLNMDREITESAIIELAGVVPPKMIDSLLQICLSGT--FEKLEVAVRNMVDEGYAATQILGQLHE-AVIEHDLSDQQKSVLTEKMAVVSKCLSDGADEYLQMLSLCSVI 350          
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: RFC4_MOUSE (Replication factor C subunit 4 n=16 Tax=Euarchontoglires TaxID=314146 RepID=RFC4_MOUSE)

HSP 1 Score: 233 bits (595), Expect = 5.140e-71
Identity = 146/326 (44.79%), Postives = 198/326 (60.74%), Query Frame = 1
Query:   13 PVPWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSKTLXXXXXXXXXXX--IKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQLPRACPAS---IADAAGEVPAAAFDELWSTACSGSASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDLC 963
            PVPWVEKYRP+ + +V   D  + V VLR S    DLPNLLF+GPPGTGKTSTIL  AR LFG     +  RVLE+NASDE    +V +++ NF++                K+VILDEAD+MT AAQA+LRRTME  S +TRFCL+CN  S II+ L SRC  FRF+PL     + RLL I E E V    +    +  +V  S GD+R+A+  LQ+A++L      S   I D AG +PAA  D ++ TAC  S S D + A V   + EG+A  +++ +  +  + +  ++D  K+++  K+ EV +CL DGADE +QL+ LC
Sbjct:   37 PVPWVEKYRPKCVDEVAFQD--EVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL--FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEE---IAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIF-TACH-SGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLC 353          
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: UPI001C4824AF (replication factor C subunit 4-like n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C4824AF)

HSP 1 Score: 233 bits (593), Expect = 8.130e-71
Identity = 142/330 (43.03%), Postives = 200/330 (60.61%), Query Frame = 1
Query:   13 PVPWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSKTLXXXXXXXXXXXI--KLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQLPRACPAS---IADAAGEVPAAAFDELWSTACSGSASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDL-CLVL 972
            P PWVEKYRP+ + DV   D  + V VL+ + +  DLPNLLF+GPPGTGKTSTIL  AR LFG L   + +RVLE+NASDE    +V +++ NF++T            I  K++ILDEAD+MT AAQA+LRRTME  S +TRFCL+CN  S II+ L SRC  FRF+PL    M  RL  ICE E V +E+   G L  ++ +S GD+RRA+  LQ+A++L      S   + +  G VP    DEL+    S S   + ++  +   + EGY+  +++ +  +  + +  ++D  KA +C ++      L DG DE VQ+LDL C+V+
Sbjct:   30 PTPWVEKYRPKTVEDVAYQD--EVVAVLKSTIKGADLPNLLFYGPPGTGKTSTILAAARQLFGDL---FHQRVLELNASDERGIQVVREKVKNFAQTTVSSTRPDGKPCIPYKIIILDEADSMTNAAQAALRRTMEKQSRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLAQDIMVKRLSYICEEENVKYED---GVLQDLIETSEGDLRRAITTLQSAARLRDGEEISQHDVYEITGVVPVKWLDELFEVCMSNS--YEKLSEFLTTMMAEGYSASQIMNQIHDHIIVNDLLSDLQKAAICERLAVCDHRLMDGGDEYVQVLDLSCIVM 349          
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: R9ANG9_WALI9 (Replication factor C subunit 2 n=2 Tax=Wallemia ichthyophaga TaxID=245174 RepID=R9ANG9_WALI9)

HSP 1 Score: 231 bits (589), Expect = 1.750e-70
Identity = 138/327 (42.20%), Postives = 200/327 (61.16%), Query Frame = 1
Query:   19 PWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSKTLXXXXXXXXXXXIKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQLPRAC-----PASIADAAGEVPAAAFDELWSTACSGSASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDLCLVL 972
            PW+EKYRPR I DV   D    + VL       +LP++LF+GPPGTGKTSTIL L+R LFGQ       RVLE+NASDE    +V D+I NF+K              K++ILDEAD+MT  AQ++LRRTMET+S STRFCLVCN  + II+ +ASRC  FRF+PL     K RL  I + E + +E+   G +D +++++ GD+R+A+  LQ+A++L +A      P +I + AG +P    D + S  CS   +   V + + +    GYA  ++L +  +  + SS++AD++KA     + E  + L DGAD+E+Q+L+L + L
Sbjct:    9 PWIEKYRPRTINDVAAQDH--TIRVLNKQLNNANLPHMLFYGPPGTGKTSTILALSRQLFGQDLVN--SRVLELNASDERGISVVRDKIKNFAKQAPKASSSSNTPSYKIIILDEADSMTQDAQSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDDTDTKARLEFIAKEEHIDYED---GVIDALISTTHGDLRQAITYLQSATRLHQATSTKIIPDTITEIAGTIPQHIIDNIVSV-CSNKKNFKEVQSTLKQIHLNGYASAQILAQLHDKVIDSSSIADSSKAKSVLAIAEADKALTDGADDELQMLNLAMKL 327          
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: A0A250YGH5_CASCN (replication factor C subunit 4 n=42 Tax=Boreoeutheria TaxID=1437010 RepID=A0A250YGH5_CASCN)

HSP 1 Score: 232 bits (591), Expect = 2.040e-70
Identity = 144/326 (44.17%), Postives = 198/326 (60.74%), Query Frame = 1
Query:   13 PVPWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSKTLXXXXXXXXXXX--IKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQLP---RACPASIADAAGEVPAAAFDELWSTACSGSASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDLC 963
            PVPWVEKYRP+ + +V    +E+ V VL+ S    DLPNLLF+GPPGTGKTSTIL  AR LFG     +  RVLE+NASDE    +V +++ NF++                K+VILDEAD+MT AAQA+LRRTME  S +TRFCL+CN  S II+ L SRC  FRF+PL     + RLL I E E V    +    +  +V  S GD+R+A+  LQ+A++L          I D AG +PA   D ++ TAC  S S D + A V   + EG+A  +++ +  ++ V +  ++D  K+++  K+ EV +CL DGADE +QL+ LC
Sbjct:   37 PVPWVEKYRPKCVDEVAF--QEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL--FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKTQQQRLLDIAEKEKVKISNEG---IAYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIAGVIPAETIDGIF-TACE-SGSFDKLEAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLC 353          
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: A0A1U7T9S5_CARSF (replication factor C subunit 4 n=5 Tax=Boreoeutheria TaxID=1437010 RepID=A0A1U7T9S5_CARSF)

HSP 1 Score: 231 bits (589), Expect = 3.960e-70
Identity = 143/330 (43.33%), Postives = 200/330 (60.61%), Query Frame = 1
Query:    7 APPVPWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSKTLXXXXXXXXXXX--IKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQLP--RACPASIADAAGEVPAAAFDELWSTACSGSASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDLCLVL 972
            A PVPWVEKYRP+ + +V    +E+ V VL+ S    DLPNLLF+GPPGTGKTSTIL  AR LFG     +  RVLE+NASDE    +V +++ NF++                K+VILDEAD+MT AAQA+LRRTME  S +TRFCL+CN  S II+ L SRC  FRF+PL     + RLL I E E V    +    +  +V  S GD+R+A+  LQ+A++L   +     I D AG +PA   D +++   SGS   D + A V   + EG+A  +++ +  ++ V +  ++D  K+++  K+ EV +CL DGADE +QL+ LC  +
Sbjct:   35 AKPVPWVEKYRPKCVDEVAF--QEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL--FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISSEG---IAYLVKVSEGDLRKAITFLQSATRLTGGKIIEKVITDIAGVIPAETIDGVFAACQSGS--FDKLEAVVKDLIDEGHAATQLVNQLHDVIVENDDLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATI 355          
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Match: A0A8C4GCY8_9TELE (Replication factor C subunit 4 n=3 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4GCY8_9TELE)

HSP 1 Score: 231 bits (588), Expect = 4.710e-70
Identity = 141/329 (42.86%), Postives = 201/329 (61.09%), Query Frame = 1
Query:   13 PVPWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPPGTGKTSTILVLARGLFGQLAAEWTERVLEVNASDE----IVHDRIANFSK--TLXXXXXXXXXXXIKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCASGIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIVASSAGDMRRAVNLLQTASQL---PRACPASIADAAGEVPAAAFDELWSTACSGSASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKVMEVSRCLNDGADEEVQLLDLCLVL 972
            P+PWVEKYRP+ + +V    +E+ V VL+ S    DLPNLLF+GPPGTGKTSTIL  AR L+G     + +RVLE+NASDE    +V +++ NF++                K++ILDEAD+MT AAQA+LRRTME  S +TRFCL+CN  S II+ L SRC  FRFRPL     + RLL ICE E + + ++   A+  +V  S GD+R+A+  LQ+ ++L        +++ + AG VP+   D L      G+   D +  AV   + EGYA  +VL +  + A+  +++ D  K+ +  K+ EV +CL DGADE +QL+ LC V+
Sbjct:   31 PIPWVEKYRPKCVDEVAF--QEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPEL--FRQRVLELNASDERGIQVVREKVKNFAQLTVAGSRADGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFRPLANDVQEERLLNICEKENIKYTKE---AIQALVKVSDGDLRKAITFLQSVARLNGEKEITESAVIEIAGVVPSKLVDGLLQICYKGT--FDKMEIAVKSLIDEGYAATQVLNQIHD-AIIDASLNDKQKSAITDKMAEVDKCLADGADEYLQLMSLCAVI 349          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPK1_ECTSI8.950e-10658.46EsV-1-182, RFC small subunit n=2 Tax=root TaxID=1 ... [more]
A0A6H5JEB4_9PHAE2.130e-7646.41AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6P8VLL4_GYMAC3.060e-7145.43replication factor C subunit 4 n=5 Tax=Percomorpha... [more]
UPI00146C65173.060e-7145.43replication factor C subunit 4 n=1 Tax=Pseudochaen... [more]
RFC4_MOUSE5.140e-7144.79Replication factor C subunit 4 n=16 Tax=Euarchonto... [more]
UPI001C4824AF8.130e-7143.03replication factor C subunit 4-like n=1 Tax=Homaru... [more]
R9ANG9_WALI91.750e-7042.20Replication factor C subunit 2 n=2 Tax=Wallemia ic... [more]
A0A250YGH5_CASCN2.040e-7044.17replication factor C subunit 4 n=42 Tax=Boreoeuthe... [more]
A0A1U7T9S5_CARSF3.960e-7043.33replication factor C subunit 4 n=5 Tax=Boreoeuther... [more]
A0A8C4GCY8_9TELE4.710e-7042.86Replication factor C subunit 4 n=3 Tax=Denticeps c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:75925..76896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog654926.Q8QNA5_ESV1K
Model size972
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0016032,GO:0019058,GO:0019079,GO:0039686,GO:0039693,GO:0044403,GO:0044419,GO:0051704
Exons1
Evalue5.53e-109
EggNOG OGs4QAR1@10239|Viruses,4QUNA@35237|dsDNA viruses no RNA stage
Ec32 ortholog descriptionEsV-1-182 replication factor C small subunit
Ec32 orthologEc-06_005100.1
DescriptionATPase activity
Cds size972
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.429266-CDS-P-littoralis_Contig15:75924..768961680789709.429266-CDS-P-littoralis_Contig15:75924..76896Pylaiella littoralis U1_48CDSP-littoralis_Contig15 75925..76896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.16.1prot_P-littoralis_Contig15.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 75925..76896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.16.1

>prot_P-littoralis_Contig15.16.1 ID=prot_P-littoralis_Contig15.16.1|Name=mRNA_P-littoralis_Contig15.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=324bp
MPAPPVPWVEKYRPRRIGDVVRDDKEDAVGVLRGSARTGDLPNLLFHGPP
GTGKTSTILVLARGLFGQLAAEWTERVLEVNASDEIVHDRIANFSKTLSR
TMSKTMSKTIKLVILDEADTMTPAAQASLRRTMETHSASTRFCLVCNCAS
GIIDSLASRCLPFRFRPLGPGPMKGRLLRICETEGVIFEEDSRGALDQIV
ASSAGDMRRAVNLLQTASQLPRACPASIADAAGEVPAAAFDELWSTACSG
SASVDGVAAAVLRFVGEGYAVGRVLGRFQEMAVSSSTMADAAKAVVCGKV
MEVSRCLNDGADEEVQLLDLCLVL
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mRNA from alignment at P-littoralis_Contig15:75925..76896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.16.1 ID=mRNA_P-littoralis_Contig15.16.1|Name=mRNA_P-littoralis_Contig15.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig15:75925..76896+ (Pylaiella littoralis U1_48)
ATGCCAGCACCGCCAGTGCCCTGGGTGGAAAAGTACCGGCCCCGGCGCAT CGGCGACGTCGTTCGCGACGATAAGGAAGATGCGGTCGGTGTTCTTCGGG GGTCGGCGAGGACGGGCGATCTGCCGAACCTGCTCTTCCACGGCCCCCCG GGGACCGGCAAGACGTCGACGATCCTGGTGCTGGCCCGAGGTCTTTTCGG TCAGCTCGCTGCAGAATGGACGGAGCGCGTTCTGGAGGTGAACGCCTCGG ACGAGATCGTCCACGACAGGATCGCAAATTTTTCCAAGACGTTGTCCAGG ACGATGTCCAAGACGATGTCCAAGACGATCAAGCTTGTGATCCTGGACGA GGCGGACACGATGACGCCGGCCGCGCAGGCTTCCCTCCGGCGCACGATGG AGACCCACTCGGCGAGCACGCGCTTTTGTCTGGTGTGCAACTGCGCTTCG GGGATCATCGACAGCCTGGCGTCTCGTTGCCTGCCTTTCCGGTTCCGTCC GCTGGGTCCGGGGCCGATGAAGGGGCGCTTGCTCCGCATCTGCGAGACGG AGGGCGTGATCTTCGAGGAAGACAGCCGCGGCGCCCTGGACCAGATCGTC GCGAGCTCGGCGGGAGACATGCGCCGGGCGGTGAACCTGCTGCAGACGGC GTCGCAGCTTCCTCGTGCCTGCCCGGCATCGATCGCGGACGCCGCCGGAG AGGTGCCGGCGGCCGCCTTTGACGAGCTGTGGTCCACGGCGTGCAGCGGG TCGGCGTCCGTCGACGGCGTCGCGGCCGCCGTTCTCCGGTTTGTGGGCGA GGGATACGCGGTCGGCCGGGTTCTCGGCCGTTTTCAGGAGATGGCGGTGT CGTCGTCGACGATGGCGGACGCCGCCAAGGCCGTGGTTTGCGGGAAGGTG ATGGAGGTTTCTCGGTGCCTGAACGACGGAGCGGACGAGGAGGTGCAGCT GCTCGACCTCTGCCTTGTATTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:75925..76896+

>mRNA_P-littoralis_Contig15.16.1 ID=mRNA_P-littoralis_Contig15.16.1|Name=mRNA_P-littoralis_Contig15.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig15:75925..76896+ (Pylaiella littoralis U1_48)
ATGCCAGCACCGCCAGTGCCCTGGGTGGAAAAGTACCGGCCCCGGCGCAT
CGGCGACGTCGTTCGCGACGATAAGGAAGATGCGGTCGGTGTTCTTCGGG
GGTCGGCGAGGACGGGCGATCTGCCGAACCTGCTCTTCCACGGCCCCCCG
GGGACCGGCAAGACGTCGACGATCCTGGTGCTGGCCCGAGGTCTTTTCGG
TCAGCTCGCTGCAGAATGGACGGAGCGCGTTCTGGAGGTGAACGCCTCGG
ACGAGATCGTCCACGACAGGATCGCAAATTTTTCCAAGACGTTGTCCAGG
ACGATGTCCAAGACGATGTCCAAGACGATCAAGCTTGTGATCCTGGACGA
GGCGGACACGATGACGCCGGCCGCGCAGGCTTCCCTCCGGCGCACGATGG
AGACCCACTCGGCGAGCACGCGCTTTTGTCTGGTGTGCAACTGCGCTTCG
GGGATCATCGACAGCCTGGCGTCTCGTTGCCTGCCTTTCCGGTTCCGTCC
GCTGGGTCCGGGGCCGATGAAGGGGCGCTTGCTCCGCATCTGCGAGACGG
AGGGCGTGATCTTCGAGGAAGACAGCCGCGGCGCCCTGGACCAGATCGTC
GCGAGCTCGGCGGGAGACATGCGCCGGGCGGTGAACCTGCTGCAGACGGC
GTCGCAGCTTCCTCGTGCCTGCCCGGCATCGATCGCGGACGCCGCCGGAG
AGGTGCCGGCGGCCGCCTTTGACGAGCTGTGGTCCACGGCGTGCAGCGGG
TCGGCGTCCGTCGACGGCGTCGCGGCCGCCGTTCTCCGGTTTGTGGGCGA
GGGATACGCGGTCGGCCGGGTTCTCGGCCGTTTTCAGGAGATGGCGGTGT
CGTCGTCGACGATGGCGGACGCCGCCAAGGCCGTGGTTTGCGGGAAGGTG
ATGGAGGTTTCTCGGTGCCTGAACGACGGAGCGGACGAGGAGGTGCAGCT
GCTCGACCTCTGCCTTGTATTG
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