mRNA_P-littoralis_Contig15.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.14.1
Unique NamemRNA_P-littoralis_Contig15.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: D8LP60_ECTSI (EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP60_ECTSI)

HSP 1 Score: 671 bits (1732), Expect = 3.990e-243
Identity = 335/348 (96.26%), Postives = 340/348 (97.70%), Query Frame = 1
Query:    1 MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHSEADVFSKKRSRLCHGRIYDHHRHGPIFSDKLT 1044
            MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGY+TRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLR VRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGT+PFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEES KRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKS+KEPSYIYTLDTYVTHILNNVKRVSNPVKLSAH E +V SKKRSR  HGRIYDHHRHGP FSD+LT
Sbjct:   21 MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYVTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRCVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTRPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESLKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSIKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHCETNVLSKKRSRF-HGRIYDHHRHGPFFSDELT 367          
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: D8LP47_ECTSI (EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP47_ECTSI)

HSP 1 Score: 581 bits (1497), Expect = 2.100e-207
Identity = 290/323 (89.78%), Postives = 302/323 (93.50%), Query Frame = 1
Query:    1 MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHSEADVFSK 969
            MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKI+AFKGT+ FFNSC TEA CLILG+ ARLLKYFI GKTYVCLTND SLSRRDIK MYASRWRVEESFKRLKSNL+LEKAHA+TP LYIQEVEARVLLDTITLR+Q S KE SY+YTLDT+VT+IL NVKRVS P +      AD+ +K
Sbjct:   21 MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTITLRMQGSTKESSYLYTLDTHVTYILRNVKRVSGPSRYKCPGVADLKAK 343          
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 548 bits (1411), Expect = 1.420e-188
Identity = 276/352 (78.41%), Postives = 304/352 (86.36%), Query Frame = 1
Query:    1 MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHSEADVFSKKRSRLCHGR------IYDHHRHGPIFSDK 1038
            +QRRRK+DTSSLF+TLT+CC+Q RGV+H+L+ME+E YSSQA+HSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFI +GY TRTN++PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AAT MLR VRKGDTL+FDRGYYSK+LLRSVHDSHAFGVWRLKI+AFKGT+ FFNSC TEA CLILG+ ARLLKYFI GKTYVCLTND SLSRRDIK MYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLR+Q S KE SY+YTLDT+VTHIL NVKRVS+P +      A++ SK      H R      I D  R    FSD+
Sbjct:   36 IQRRRKMDTSSLFFTLTRCCVQGRGVSHVLKMEDEAYSSQAVHSARKKLPIGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINSGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVRKGDTLLFDRGYYSKDLLRSVHDSHAFGVWRLKIDAFKGTRSFFNSCRTEAACLILGIEARLLKYFIDGKTYVCLTNDPSLSRRDIKTMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRMQSSTKESSYLYTLDTHVTHILRNVKRVSSPTRYKFLRVAELESKTPFGRMHYRPSDTDIIIDFARREKDFSDR 387          
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: Q8QNB6_ESV1K (EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB6_ESV1K)

HSP 1 Score: 530 bits (1365), Expect = 5.600e-187
Identity = 262/323 (81.11%), Postives = 290/323 (89.78%), Query Frame = 1
Query:    1 MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVSNPVKLSAHSEADVFSK 969
            MQRRRK+DTSSLFYTLT+CC+Q RGV H+L+ME+E YSSQA+HSARKKLP GAFKEVNRFL RGPHEPRVFAVDGSKVHVHPSFI AGY TRTN++PV RPAKRPLVMLSSMVDVKTKAC+DFELTKHFNER+AAT MLR V+KGDTL+FDRGYYSK+LL SVH SHAFGVWRLKI+AF+GT+ FFNSC TEATCLILGV+ARLLKYFI GKTYVCLT D SLSR  IK MYASRWRVEESFKRLKSNL+LEKAHA+TP LYIQEVEARVLLDTITLR+Q S KE SY+YTLDT+VT+IL NVKRVS+P +      AD+ +K
Sbjct:   21 MQRRRKMDTSSLFYTLTRCCVQGRGVNHVLKMEDEAYSSQAVHSARKKLPMGAFKEVNRFLHRGPHEPRVFAVDGSKVHVHPSFINAGYKTRTNDQPVSRPAKRPLVMLSSMVDVKTKACIDFELTKHFNERRAATSMLRSVQKGDTLLFDRGYYSKDLLHSVHGSHAFGVWRLKIDAFRGTRSFFNSCRTEATCLILGVKARLLKYFIDGKTYVCLTTDPSLSRLKIKTMYASRWRVEESFKRLKSNLRLEKAHARTPDLYIQEVEARVLLDTITLRMQGSTKESSYLYTLDTHVTYILRNVKRVSSPSRYKCLGVADLKAK 343          
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 489 bits (1258), Expect = 6.980e-165
Identity = 246/307 (80.13%), Postives = 268/307 (87.30%), Query Frame = 1
Query:    1 MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHILNNVKRVS 921
            MQRRRKLDTSS+FYT+TKCC +ERGV+H+L+ME E+YSSQA+H ARKKLP GAFKEVNRFL RGPHEPR+FA+DGSKVHVHPSFI AGY TRTN+KPVPRPAKRPLVMLSSMVDV+TK+C+DFELTKHF+ER+AA  MLR VRK DTL+FDRGYYSK+LLRSVHDS AFGVWRL+I                  CLILGVR RLLKYFI GKTYVCLTND SLSRRDIK MYA RWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLR+Q S KE SY+YTLDT+VTHIL NVKRVS
Sbjct:   21 MQRRRKLDTSSVFYTITKCCTRERGVSHVLKMEAEEYSSQAVHLARKKLPIGAFKEVNRFLHRGPHEPRIFAIDGSKVHVHPSFIKAGYKTRTNDKPVPRPAKRPLVMLSSMVDVRTKSCIDFELTKHFDERRAAVSMLRSVRKSDTLLFDRGYYSKDLLRSVHDSGAFGVWRLRI----------------MPCLILGVRVRLLKYFIKGKTYVCLTNDPSLSRRDIKTMYAWRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRMQSSTKESSYLYTLDTHVTHILRNVKRVS 311          
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: A0A6H5K0K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K9_9PHAE)

HSP 1 Score: 361 bits (926), Expect = 1.360e-122
Identity = 191/250 (76.40%), Postives = 207/250 (82.80%), Query Frame = 1
Query:   94 MENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGVRARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTITLRLQK 843
            M NEQYSSQAIH ARKKLP GAFKEVNRFL +GPHEPRVFAVDGSKVHVHPSFIGAGY TRTN+KPVPRPAK PLVMLSSMVDVKTKACVDFELTKHFNE  +                 R Y  K  LRS+HDS AFGVWRLKINAFKGTK F +S  TE TCLILGV++RL+KY I+GKTYVCLTND +LSRRDIK +YASRWR E+S  RLKSN++LEKAHA+TP LYIQEVEARVLLDTITLRLQ+
Sbjct:    1 MGNEQYSSQAIHLARKKLPVGAFKEVNRFLHQGPHEPRVFAVDGSKVHVHPSFIGAGYKTRTNDKPVPRPAKSPLVMLSSMVDVKTKACVDFELTKHFNEDGS-----------------RIYTQK--LRSIHDSQAFGVWRLKINAFKGTKSFISSWRTETTCLILGVQSRLVKYSINGKTYVCLTNDPTLSRRDIKAIYASRWRGEQSL-RLKSNVRLEKAHARTPDLYIQEVEARVLLDTITLRLQR 230          
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 4.650e-43
Identity = 95/169 (56.21%), Postives = 104/169 (61.54%), Query Frame = 1
Query:    1 MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLPPGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAF 507
            +QRRRK+DTSSLFYTLTK CIQERGV HILR ++EQYSSQA+HSARKKLP GAFKE                                        PVPRPA RPLVMLSSMVD           TK FNERKA   MLR V +GDTLVFD+ YYS+ LLR+VHDS AF
Sbjct:  175 IQRRRKIDTSSLFYTLTKRCIQERGVGHILRTDDEQYSSQAVHSARKKLPAGAFKE----------------------------------------PVPRPATRPLVMLSSMVD-----------TKLFNERKADVSMLRSVHQGDTLVFDKEYYSRGLLRNVHDSKAF 292          
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: A0A2Z2NHE4_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NHE4_9GAMM)

HSP 1 Score: 107 bits (268), Expect = 5.400e-22
Identity = 83/268 (30.97%), Postives = 128/268 (47.76%), Query Frame = 1
Query:  112 SSQAIHSARKKLPPGAFKEVN-RFLQRGPHEP-------RVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLIL-------------------GVRARLLKYFISGKTYVC---LTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTI 825
            ++ A  +AR KL    FK +  + LQ+   +P       R+ AVDGSK+++    I AGY T ++N      A  P   +S + ++KTK  +DF+L  H +ERK A   L  + + D +V+DRGYYS ++L      H   ++RLK  A +  + F NS   +A   I                     +  RL+KY   G +Y+    L +    S   +  +Y SRW VEE +K  K  +K+E  HA++     QE+ A   L T+
Sbjct:  398 AASAFCNARAKLDEEVFKLLQVQILQQAKPDPKKLWQGHRLMAVDGSKLNLPRQLIRAGYKTPSDN------AHYPQGTVSCLYELKTKIPIDFDLASHRDERKMAISHLNSLSETDVVVYDRGYYSYDMLHEHDKRHIHPIFRLKTTACRVVEAFANSDDIDAVVQIFPSQSKRTSIPAHDPQPDYPALALRLVKYDAGGTSYILGTTLWDQKKYSIEQLSAVYHSRWGVEELYKISKQLMKVEDFHAQSERGVKQELFAHFNLITL 659          
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: A0A6L8GGC8_9BACT (IS4 family transposase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8GGC8_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 2.550e-16
Identity = 78/264 (29.55%), Postives = 125/264 (47.35%), Query Frame = 1
Query:  121 AIHSARKKLPPGAFKEVNR-FLQRGPHEP-----RVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILG---VRARL---------------LKYFISGKTYVCLTNDLS----LSRRDIKVMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLLDTIT 828
            A+  AR K+ P  F+E++R  L + P  P     RVF VDG+K+++    + AGY T  ++      A  P  ++S + +++ +   DF L    +ER+AA E L+ +  GD +V+DRGY+S  +L +        V+RLK +A   T  F      + T  I      RARL               L  + +G T   L   L+        D+  +Y +RWR+EE +K  K  L +E   A++    +QE+ A  ++ T T
Sbjct:  379 AMSRARAKVDPEVFRELHREILAQAPDRPLWKGRRVFGVDGAKINLPRPLVEAGYATPGDH------AHYPQGLVSCLYELEPRLPFDFGLHADTSERRAAAEHLKALSAGDVVVYDRGYFSYEMLLAHVVRGQDAVFRLKRDANAETVAFLAGPLDDRTVEIRPDDKARARLKARHPGAAFGPLKLRLVRYAAGDTVFALGTTLAEDDGFGLEDLAAIYRARWRIEEHYKIAKWFLAVESFRAESERGVLQELYANFVMVTAT 636          
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Match: A0A658K6S8_PSEA0 (IS4 family transposase n=3 Tax=Pseudomonas amygdali TaxID=47877 RepID=A0A658K6S8_PSEA0)

HSP 1 Score: 85.9 bits (211), Expect = 6.350e-15
Identity = 76/266 (28.57%), Postives = 116/266 (43.61%), Query Frame = 1
Query:  121 AIHSARKKLPPGAFKEVNRFLQRGPHEPR---------VFAVDGSKVHVHPSFIGAGYMTRTNNKPVPRPAKR--PLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVFDRGYYSKNLLRSVHDSHAFGVWRLKINAFKG-TKPFFNSCHTEA-------------------TCLILGVRARLLKYFISGKTYVCLT---NDLSLSRRDIKVMYASRWRVEESFKRLKSNLKLEKAHAKTPALYIQEVEARVLL 816
            ++  AR+KLP   FK +N  L    H  R         VFA+DGSK++     +  GY T       PR   R  P  M+S + +++ +   DFEL  H +ER+   E L  + +GD ++FDRGY+S  +L  V  S    V+RL+          F+++   +A                   T     +  RL+K  I  +T+V  T   N    S      +Y  RW +EE +K  K  + +E  H++T     QE+    LL
Sbjct:   51 SLCEARQKLPEAVFKTLNDELISLWHAHRDTPTWKGHRVFAIDGSKINAPRGLLEYGYKT-------PRETTRHYPCAMMSGLYNLQEQLIYDFELVPHNDERRCVPEHLAKLERGDLVIFDRGYFSYQILHEVLASGQHAVFRLQQGTTNSQVAAFWDNDRKDAIIDYVPSPAVKHGLKKRGHTTGFQPLAIRLVKCKIEDETHVYATTLMNQTGYSVDCFADLYHGRWGIEELYKVSKQFIDVEDFHSQTERGVKQEIYGHFLL 309          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LP60_ECTSI3.990e-24396.26EsV-1-155 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
D8LP47_ECTSI2.100e-20789.78EsV-1-170 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K772_9PHAE1.420e-18878.41DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
Q8QNB6_ESV1K5.600e-18781.11EsV-1-170 n=2 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JA56_9PHAE6.980e-16580.13DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0K9_9PHAE1.360e-12276.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4T1_9PHAE4.650e-4356.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2Z2NHE4_9GAMM5.400e-2230.97Uncharacterized protein n=1 Tax=Granulosicoccus an... [more]
A0A6L8GGC8_9BACT2.550e-1629.55IS4 family transposase n=1 Tax=Acidobacteria bacte... [more]
A0A658K6S8_PSEA06.350e-1528.57IS4 family transposase n=3 Tax=Pseudomonas amygdal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:65602..66648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1046724.KB889834_gene1048
PFAMsDDE_Tnp_1,Nterm_IS4
Model size1047
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.19e-22
EggNOG OGsCOG3385@1|root,COG3385@2|Bacteria,1MVRM@1224|Proteobacteria,1RRFT@1236|Gammaproteobacteria,464GA@72275|Alteromonadaceae
DescriptionCOG3385 FOG Transposase and inactivated derivatives
Cds size1047
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.352098-CDS-P-littoralis_Contig15:65601..666481680789709.352098-CDS-P-littoralis_Contig15:65601..66648Pylaiella littoralis U1_48CDSP-littoralis_Contig15 65602..66648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.14.1prot_P-littoralis_Contig15.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 65602..66648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.14.1

>prot_P-littoralis_Contig15.14.1 ID=prot_P-littoralis_Contig15.14.1|Name=mRNA_P-littoralis_Contig15.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=349bp
MQRRRKLDTSSLFYTLTKCCIQERGVAHILRMENEQYSSQAIHSARKKLP
PGAFKEVNRFLQRGPHEPRVFAVDGSKVHVHPSFIGAGYMTRTNNKPVPR
PAKRPLVMLSSMVDVKTKACVDFELTKHFNERKAATEMLRGVRKGDTLVF
DRGYYSKNLLRSVHDSHAFGVWRLKINAFKGTKPFFNSCHTEATCLILGV
RARLLKYFISGKTYVCLTNDLSLSRRDIKVMYASRWRVEESFKRLKSNLK
LEKAHAKTPALYIQEVEARVLLDTITLRLQKSMKEPSYIYTLDTYVTHIL
NNVKRVSNPVKLSAHSEADVFSKKRSRLCHGRIYDHHRHGPIFSDKLT*
back to top

mRNA from alignment at P-littoralis_Contig15:65602..66648-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.14.1 ID=mRNA_P-littoralis_Contig15.14.1|Name=mRNA_P-littoralis_Contig15.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig15:65602..66648- (Pylaiella littoralis U1_48)
ATGCAGAGACGACGAAAGCTAGATACATCTTCCCTTTTCTACACGCTCAC TAAGTGTTGTATTCAAGAGAGAGGTGTCGCTCACATACTGAGGATGGAAA ACGAACAGTACTCGTCTCAGGCGATACATTCGGCCAGGAAGAAGCTTCCA CCAGGGGCTTTCAAGGAAGTAAACCGGTTCTTGCAACGAGGACCACATGA ACCACGTGTGTTCGCCGTAGATGGTTCGAAAGTGCACGTGCACCCTTCGT TCATCGGGGCTGGATATATGACCCGGACGAACAATAAACCGGTCCCGCGT CCCGCGAAAAGACCTCTTGTCATGCTTTCTTCGATGGTGGACGTAAAAAC AAAAGCGTGTGTGGACTTTGAGCTCACGAAACACTTCAACGAAAGAAAGG CAGCCACTGAGATGCTCCGAGGTGTACGGAAAGGGGATACTCTGGTGTTT GACAGAGGCTACTACTCCAAGAACTTGCTGCGAAGCGTTCATGACTCGCA TGCGTTTGGGGTTTGGCGACTCAAGATAAATGCGTTCAAAGGCACTAAGC CTTTCTTCAACTCGTGTCACACGGAAGCAACATGCCTTATTCTTGGTGTC AGGGCGCGTCTCTTGAAGTATTTTATTTCTGGTAAAACATATGTTTGCCT GACGAACGATCTATCGCTATCTCGGAGGGATATCAAGGTCATGTACGCGT CGAGGTGGCGGGTGGAGGAATCCTTCAAACGATTGAAATCAAACCTCAAA CTTGAGAAAGCACATGCCAAAACTCCGGCTCTTTATATTCAGGAGGTAGA AGCGCGGGTCTTGTTAGACACAATCACACTGAGGTTGCAAAAATCGATGA AGGAACCATCGTATATCTACACACTTGATACATACGTCACACATATCCTT AACAACGTCAAGAGAGTTTCGAATCCCGTGAAATTGAGCGCACATTCTGA AGCAGATGTGTTCTCCAAGAAGCGAAGTCGCTTGTGCCATGGTCGCATAT ATGATCATCATCGCCACGGACCGATTTTTTCAGACAAACTGACTTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig15:65602..66648-

>mRNA_P-littoralis_Contig15.14.1 ID=mRNA_P-littoralis_Contig15.14.1|Name=mRNA_P-littoralis_Contig15.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig15:65602..66648- (Pylaiella littoralis U1_48)
ATGCAGAGACGACGAAAGCTAGATACATCTTCCCTTTTCTACACGCTCAC
TAAGTGTTGTATTCAAGAGAGAGGTGTCGCTCACATACTGAGGATGGAAA
ACGAACAGTACTCGTCTCAGGCGATACATTCGGCCAGGAAGAAGCTTCCA
CCAGGGGCTTTCAAGGAAGTAAACCGGTTCTTGCAACGAGGACCACATGA
ACCACGTGTGTTCGCCGTAGATGGTTCGAAAGTGCACGTGCACCCTTCGT
TCATCGGGGCTGGATATATGACCCGGACGAACAATAAACCGGTCCCGCGT
CCCGCGAAAAGACCTCTTGTCATGCTTTCTTCGATGGTGGACGTAAAAAC
AAAAGCGTGTGTGGACTTTGAGCTCACGAAACACTTCAACGAAAGAAAGG
CAGCCACTGAGATGCTCCGAGGTGTACGGAAAGGGGATACTCTGGTGTTT
GACAGAGGCTACTACTCCAAGAACTTGCTGCGAAGCGTTCATGACTCGCA
TGCGTTTGGGGTTTGGCGACTCAAGATAAATGCGTTCAAAGGCACTAAGC
CTTTCTTCAACTCGTGTCACACGGAAGCAACATGCCTTATTCTTGGTGTC
AGGGCGCGTCTCTTGAAGTATTTTATTTCTGGTAAAACATATGTTTGCCT
GACGAACGATCTATCGCTATCTCGGAGGGATATCAAGGTCATGTACGCGT
CGAGGTGGCGGGTGGAGGAATCCTTCAAACGATTGAAATCAAACCTCAAA
CTTGAGAAAGCACATGCCAAAACTCCGGCTCTTTATATTCAGGAGGTAGA
AGCGCGGGTCTTGTTAGACACAATCACACTGAGGTTGCAAAAATCGATGA
AGGAACCATCGTATATCTACACACTTGATACATACGTCACACATATCCTT
AACAACGTCAAGAGAGTTTCGAATCCCGTGAAATTGAGCGCACATTCTGA
AGCAGATGTGTTCTCCAAGAAGCGAAGTCGCTTGTGCCATGGTCGCATAT
ATGATCATCATCGCCACGGACCGATTTTTTCAGACAAACTGACTTAG
back to top