mRNA_P-littoralis_Contig15.12.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig15.12.1 vs. uniprot
Match: D8LP59_ECTSI (N/a n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP59_ECTSI) HSP 1 Score: 775 bits (2000), Expect = 7.550e-273 Identity = 381/401 (95.01%), Postives = 391/401 (97.51%), Query Frame = 1
Query: 1 VDHLSCRLERRLWEFRDNEHFWTNIPRAAKKIYEAAGQKTPERALPIIRKFVDQKRGSENELLRPEWGGAMRDLLSEYRGLFEPLRVKRPPPKNPPEHPKTEEELTGREDFLYNVKARLNDVLQIEAECRKVDFHLQKRRGEIWSEINERQQSIKSSKTKEGFLKQRHLLQEIPVPPWFDEGTEMSKKDASNLVRDVRNTRKDMWKSMREPGTEHPPKAFSLMPHFSLTRAFVRYDSQSIGNLAKSLDFSGVSENQVTLKTTGVKCSGKAERLWWTGIFDFHSERIVNRRPNTKKNQTQRTRKVLRLNNRYRKGIGVCSKDPWFTDELLYSAKRDDPSCETPWIVNSISTDGLQVKVCLATLAKTNPLPKGVKELVKKGYASIQDKLRVSKSSKGVFKEAF 1203
+DHLSCRLERRLWE RD+EHFWTNIPRAAKKIYEAAGQKTPERALPIIRKFVDQKRGSE ELLRPEWG AM LLSEYRGLFEPLRVKRPPPK+PPEHPKTEEELTGREDFLYNVKARLNDVL+IEA CRKVDFHL+KRRGEIWSEINERQQSIKSSKTKEGFLKQRHLLQEIPVPPWFDEG +MSKKDASNLVRDVRNTRKDMWKSMREPGTE PPKAFSLMPHFSLTRAFVRYDSQSIG LAKSLDF GVSENQVTLKTTGVKCSGKAERLWWTGIFDFHSERIVNRRP+T+KNQTQRTRKVLRLNNRYRKGIGVC+KDPWFTDE+LYSAKRDDPSCETPWIVNSISTDGLQVKVCLATLAKTNPLPKGVKELVKKGYASIQDKLRVSKSSKGVFKEAF
Sbjct: 1 MDHLSCRLERRLWECRDDEHFWTNIPRAAKKIYEAAGQKTPERALPIIRKFVDQKRGSEKELLRPEWGEAMEHLLSEYRGLFEPLRVKRPPPKDPPEHPKTEEELTGREDFLYNVKARLNDVLRIEAGCRKVDFHLRKRRGEIWSEINERQQSIKSSKTKEGFLKQRHLLQEIPVPPWFDEGIKMSKKDASNLVRDVRNTRKDMWKSMREPGTEDPPKAFSLMPHFSLTRAFVRYDSQSIGTLAKSLDFPGVSENQVTLKTTGVKCSGKAERLWWTGIFDFHSERIVNRRPSTEKNQTQRTRKVLRLNNRYRKGIGVCNKDPWFTDEVLYSAKRDDPSCETPWIVNSISTDGLQVKVCLATLAKTNPLPKGVKELVKKGYASIQDKLRVSKSSKGVFKEAF 401
BLAST of mRNA_P-littoralis_Contig15.12.1 vs. uniprot
Match: A0A6H5KAA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA5_9PHAE) HSP 1 Score: 393 bits (1010), Expect = 6.880e-130 Identity = 199/229 (86.90%), Postives = 202/229 (88.21%), Query Frame = 1
Query: 1 VDHLSCRLERRLWEFRDNEHFWTNIPRAAKKIYEAAGQKTPERALPIIRKFVDQKRGSENELLRPEWGGAMRDLLSEYRGLFEPLRVKRPPPKNPPEHPKTEEELTGREDFLYNVKARLNDVLQIEAECRKVDFHLQKRRGEIWSEINERQQSIKSSKTKEGFLKQRHLLQEIPVPPWFDEGTEMSKKDASNLVRDVRNTRKDMWKSMREPGTEHPPKAFSLMPHFSLT 687
VDHLSCRLERRLWEFRD+EHFWTNIPRAAKKIYEAAGQKTPERALPIIRKFVDQKRGSENELLRPEWG AM DLLSEYRGLFEPLR KRPPPKNPPEHPKTEEELTGREDFLYNVKA LNDVLQIEAECRKVDFHLQKRRGEIWSEINERQQSIKS F++ G EMSKKDASNLVRDVRNTRKDMWKSMREPGTEHPPKAFSLMPHFSLT
Sbjct: 18 VDHLSCRLERRLWEFRDDEHFWTNIPRAAKKIYEAAGQKTPERALPIIRKFVDQKRGSENELLRPEWGEAMEDLLSEYRGLFEPLRAKRPPPKNPPEHPKTEEELTGREDFLYNVKAMLNDVLQIEAECRKVDFHLQKRRGEIWSEINERQQSIKS------FIQDER------------GGIEMSKKDASNLVRDVRNTRKDMWKSMREPGTEHPPKAFSLMPHFSLT 228
BLAST of mRNA_P-littoralis_Contig15.12.1 vs. uniprot
Match: A0A835YYB9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB9_9STRA) HSP 1 Score: 209 bits (533), Expect = 2.220e-54 Identity = 132/291 (45.36%), Postives = 169/291 (58.08%), Query Frame = 3
Query: 1251 IEVVGLDPGQVSVYATVRANI---TSPETFEASEFKGSRSSISSREYKHQSLTRFSARAEVRRRLDNVEYGQAVKAFDSVSLKQPGSSVAYSSVIYCTLGVRVVELLSEERRLQKFARLRARQRTVDGMARDIAFGNTYRQAVRKEQRSSAEPLSPERRKELLKKIRDK--------RRVVFFGNGQFGHGARGPCPRKALIRELGVLCPVVLVDEFRTSKCCCSCGVPLKQVDGSRVFRCSSQMDEGRS--CPVRYIDRDTNGSANIGVCGVFQLLGLKRPSFLCRNSSE 2084
IE VG+D GQ +Y A + TSPE F+ K + S+ ++K SL++ + E RR DN Y A+ SVS++ PG + AY+++++ V E LS ERR + F RA+ R + MA IA + A+RK P PE R+ LL ++RD RVVFFGN QFGHG+RGP PRKALIR + +L PVVL+DEFRTSK CC CG L QV+GSRVFRC S EG + C VR+IDRD N S NI +CG+ LLG RP LCR E
Sbjct: 496 IEAVGVDSGQKLLYTAAAARVSSDTSPEDFK----KIQPAFRSASDHKFLSLSKAWRKFEGERRRDNTGYSDAISQLSSVSMRTPGGAAAYTNMLHSHFIVMADEKLSWERRRKSFDAKRAKMREISRMAVQIAGRSAEAAALRK-----IGP-EPEEREALLTRMRDNLAGDRRTWTRVVFFGNAQFGHGSRGPLPRKALIRAIALLVPVVLMDEFRTSKACCGCGKNLVQVNGSRVFRCISCTPEGDNLDCSVRFIDRDINASVNIAICGINMLLGRTRPPHLCRGVGE 776
BLAST of mRNA_P-littoralis_Contig15.12.1 vs. uniprot
Match: A0A835Z394_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z394_9STRA) HSP 1 Score: 207 bits (527), Expect = 2.150e-53 Identity = 122/291 (41.92%), Postives = 171/291 (58.76%), Query Frame = 3
Query: 1239 PDNHIEVVGLDPGQVSVYATVRANITSPETFEASEFKG-SRSSISSREYKHQSLTRFSARAEVRRRLDNVEYGQAVKAFDSVSLKQPGSSVAYSSVIYCTLGVRVVELLSEERRLQKFARLRARQRTVDGMARDIAFGNTYRQAVRKEQRSSAEPLSPERRKELLKKIRDK--------RRVVFFGNGQFGHGARGPCPRKALIRELGVLCPVVLVDEFRTSKCCCSCGVPLKQVDGSRVFRCSSQMDEG--RSCPVRYIDRDTNGSANIGVCGVFQLLGLKRPSFLCRNS 2078
P +E+VG+DPGQ +Y A +TS + A +FK +S S+ +++ SL++ + RR DN+ Y A+ VS++ PG + AY++ ++ E LS RR + F RA+ R + MAR+I ++ A+RK S E R LL ++RD+ RV FFGN QFGHG+RGP PRKALIR + +L PVVL+DEFRTS CC CG+ L QVD SRV++C+S E ++C VR+IDRD N S NIG+CG+ LLG+ RP LCR +
Sbjct: 529 PRCFVEIVGVDPGQKLLYKAAAARVTSNSS--AEDFKNIETASRSASDHRFLSLSKAYTNFDKERRRDNMSYRTAIAELSGVSMRTPGGTAAYANTLHTNFKAMTEEKLSWGRRCKSFDAKRAKMREIARMAREIGGKSSEAAALRKVGPESEE------RAALLSRMRDRLAGNHRTWTRVAFFGNAQFGHGSRGPLPRKALIRAIALLVPVVLMDEFRTSMTCCGCGMNLVQVDSSRVYQCASCTPESVNQNCSVRFIDRDVNASVNIGMCGIRMLLGMSRPLHLCRTA 811
BLAST of mRNA_P-littoralis_Contig15.12.1 vs. uniprot
Match: A0A836CCX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCX3_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.180e-51 Identity = 132/292 (45.21%), Postives = 170/292 (58.22%), Query Frame = 3
Query: 1251 IEVVGLDPGQVSVYATVRANITSPETFEASEFKGSRSSISSREYKHQSLTRFSARAEVRRRLDNVEYGQAVKAF--DSVSLKQPGSSVAYSSVIYCTLGVRVVELLSEERRLQKFARLRARQRTVDGMARDIAFGNTYRQAVRKEQRSSAE---PLSPERRKELLKKIRDK---------RRVVFFGNGQFGHGARGPCPRKALIRELGVLCPVVLVDEFRTSKCCCSCGVPLKQVDGSRVFRCSSQMDE----GRSCPVRYIDRDTNGSANIGVCGVFQLLGLKRPSFLCR 2072
+E +G+DPGQ + VR +T EA++ KGS IS REY++Q+L + R E RR N Y A++++ D S + P +S +Y L E LS +RR FAR RA R + +ARDIA G+ A R E+R SA P+SP RR+ELL K++++ RVVFFGNGQFG GA GP PRKAL+++L +C VVL DE+ TSK C CG L QV GSRVFRCSS DE G C VRY+DRD G NI + GV +L G RP+ L R
Sbjct: 425 VEAIGVDPGQKQLITHVRTRVT--RRTEAADLKGSDRCISGREYRYQNLALRAQRFERERREANAPYRLALESYARDEASARCPRGMELFSRTVYQGLDAVAGEHLSAQRRRFAFARARATDRALAHLARDIAGGDPDAAAERAERRRSAPGKAPVSP-RRRELLAKVQERLAGGRGRTWTRVVFFGNGQFGSGAAGPLPRKALLKKLSEICCVVLTDEYLTSKTCPCCGGRLAQVAGSRVFRCSSTTDEDSGAGGRCSVRYLDRDCAGGGNIAMIGVRRLQGRGRPAHLAR 713
BLAST of mRNA_P-littoralis_Contig15.12.1 vs. uniprot
Match: A0A835YYX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYX5_9STRA) HSP 1 Score: 199 bits (506), Expect = 9.410e-51 Identity = 125/285 (43.86%), Postives = 162/285 (56.84%), Query Frame = 3
Query: 1251 IEVVGLDPGQVSVYATVRANITSPETFEASEFKGSRSSI-SSREYKHQSLTRFSARAEVRRRLDNVEYGQAVKAFDSVSLKQPGSSVAYSSVIYCTLGVRVVELLSEERRLQKFARLRARQRTVDGMARDIAFGNTYRQAVRKEQRSSAEPLSPERRKELLKKIRDK--------RRVVFFGNGQFGHGARGPCPRKALIRELGVLCPVVLVDEFRTSKCCCSCGVPLKQVDGSRVFRCSSQMDEGRS--CPVRYIDRDTNGSANIGVCGVFQLLGLKRPSFLCR 2072
IE VG+D GQ +Y A I+S + A +FK + + S+ ++K SL + E RR DN Y A+ VS++ PG + AY+ ++ E LS +RR + F RA+ R + MA IA + A+RK P P+ R+ LL +RD RVVFFGN FGHG+RGP PRKALIR + +L PVVL+DEFRTSK CC CG L QV+GSRVFRC S EG + C VR+IDRD N S NI +CG+ LLG+ RP LCR
Sbjct: 491 IEAVGVDSGQKLLYTAAAARISSDTS--AEDFKKIQPAFRSASDHKFLSLAKARRMFEGERRRDNSAYSTAISQLSEVSMRTPGGTAAYTDTLHSHFITLAEEKLSWKRRCKSFDAKRAKMREISRMAVQIAGRSAEASALRK-----IGP-EPKEREALLTSMRDNLAGDRRTWTRVVFFGNALFGHGSRGPLPRKALIRAIALLVPVVLMDEFRTSKACCGCGKNLVQVNGSRVFRCISCTPEGDNLDCSVRFIDRDVNASVNIAICGINMLLGMARPPHLCR 767
BLAST of mRNA_P-littoralis_Contig15.12.1 vs. uniprot
Match: A0A835ZC03_9STRA (OrfB_Zn_ribbon domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC03_9STRA) HSP 1 Score: 155 bits (392), Expect = 2.270e-37 Identity = 79/136 (58.09%), Postives = 93/136 (68.38%), Query Frame = 3
Query: 1707 PERRKELLKKIRDK--------RRVVFFGNGQFGHGARGPCPRKALIRELGVLCPVVLVDEFRTSKCCCSCGVPLKQVDGSRVFRCSSQMDEGRS--CPVRYIDRDTNGSANIGVCGVFQLLGLKRPSFLCRNSSE 2084
PE R+ LL ++RD RVVFFGN QFGHG+RGP PRKALIR + +L PVVL++EFRTSK CC CG L QV+GSRVFRC S EG + C VR+IDRD N S NI +CG+ LLG RP LCR + E
Sbjct: 309 PEEREALLTRMRDNLAGDRRTWTRVVFFGNAQFGHGSRGPLPRKALIRAIALLVPVVLMNEFRTSKACCGCGKNLVQVNGSRVFRCISCTPEGDNLDCSVRFIDRDINASVNIAICGINMLLGRTRPQHLCRGAGE 444
BLAST of mRNA_P-littoralis_Contig15.12.1 vs. uniprot
Match: A0A835ZC24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC24_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.580e-28 Identity = 99/245 (40.41%), Postives = 126/245 (51.43%), Query Frame = 3
Query: 1323 ETFEASEFKGSRSSISSREYKHQSLTRFSARAEVRRRLDNVEYGQAVKAF--DSVSLKQPGSSVAYSSVIYCTLGVRVVELLSEERRLQKFARLRARQRTVDGMARDIAFGNTYRQAVRKEQRSSA---EPLSPERRKELLKKIRDK---------RRVVFFGNGQFGHGARGPCPRKALIRELGVLCPVVLVDEFRTSKCCCSCGVPLKQVDGSRVFRCSSQMDEGRSCPVRYIDRDTNGSANI 2015
E A++ KGS IS REY++QSL + R E RR N Y A++ + D S + PG +S +Y L E LS +RR FAR RA R + +ARDIA G+ A R E+R SA P+SP RR+ELL +R++ R+VFFGNGQFG GA G PRKAL++ L +C VVL DE+ TSK G G C VRY+DRD G NI
Sbjct: 617 EAIGAADLKGSDRCISGREYRYQSLALRAQRFERERREANAPYRLALENYARDEASARCPGGMELFSRTVYQGLDAVAGEQLSAQRRRFAFARARATDRALAHLARDIAGGDPDAAASRAERRRSAPGKSPVSP-RRRELLANVRERLAGGRGRTWTRIVFFGNGQFGSGAAGRLPRKALLKTLAEICCVVLTDEYLTSKTYEDSGA-------------------GGRCSVRYLDRDCAGGGNI 841 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig15.12.1 >prot_P-littoralis_Contig15.12.1 ID=prot_P-littoralis_Contig15.12.1|Name=mRNA_P-littoralis_Contig15.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=351bp MRDLLSEYRGLFEPLRVKRPPPKNPPEHPKTEEELTGREDFLYNVKARLNback to top mRNA from alignment at P-littoralis_Contig15:62763..64852- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig15.12.1 ID=mRNA_P-littoralis_Contig15.12.1|Name=mRNA_P-littoralis_Contig15.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2090bp|location=Sequence derived from alignment at P-littoralis_Contig15:62763..64852- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig15:62763..64852- >mRNA_P-littoralis_Contig15.12.1 ID=mRNA_P-littoralis_Contig15.12.1|Name=mRNA_P-littoralis_Contig15.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1053bp|location=Sequence derived from alignment at P-littoralis_Contig15:62763..64852- (Pylaiella littoralis U1_48)back to top |