mRNA_P-littoralis_Contig15.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.10.1
Unique NamemRNA_P-littoralis_Contig15.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.10.1 vs. uniprot
Match: Q8QNB3_ESV1K (EsV-1-174 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB3_ESV1K)

HSP 1 Score: 129 bits (325), Expect = 1.370e-36
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 1 
Query:   10 SSDFTPTQRMIMFYTACLPARLSLAAFVRRFGGNPVLRSIVVVLSCGTYFFNAHKMRHGAGGSDVWWCRPVHMLSGLSVAISLIASSDTRIPSAVLLADAMIGIGTSIVKKPF 348
            ++ FT TQR  MFY  C+P RLSL+A V +FG +P++RS+ V+    +YFFN+ K+R  A   DVWW RPVHMLSG+SV+I LI S  T +PSA+LLADA+IG+ TS  K+PF
Sbjct:    6 AAGFTATQRSHMFYKICVPIRLSLSALVYQFGSHPLVRSVAVISGLASYFFNSKKIRD-ARPHDVWWYRPVHMLSGVSVSILLIGSPKTTVPSAILLADALIGLATSFYKQPF 117
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BLAST of mRNA_P-littoralis_Contig15.10.1 vs. uniprot
Match: D8LPJ3_ECTSI (EsV-1-174 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ3_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 3.110e-36
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:   10 SSDFTPTQRMIMFYTACLPARLSLAAFVRRFGGNPVLRSIVVVLSCGTYFFNAHKMRHGAGGSDVWWCRPVHMLSGLSVAISLIASSDTRIPSAVLLADAMIGIGTSIVKKP 345
            ++ FT  QR  MFY  C+P RLSLAA V +FG +P++RS+ V+    +YFFN+ K+R  A  +DVWW RPVHMLSG+ VAI LI S  T +PSA+LLADA+IG+ TS  KKP
Sbjct:   13 AAGFTAAQRSRMFYNICVPIRLSLAALVYQFGSHPLVRSVAVISGLASYFFNSKKIRD-ARPNDVWWYRPVHMLSGVGVAILLIVSPKTTVPSAILLADALIGLATSFCKKP 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNB3_ESV1K1.370e-3655.75EsV-1-174 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPJ3_ECTSI3.110e-3656.25EsV-1-174 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:60135..60488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size354
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionEsV-1-174
Ec32 orthologEc-06_005180.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.2231922-CDS-P-littoralis_Contig15:60134..604881680789709.2231922-CDS-P-littoralis_Contig15:60134..60488Pylaiella littoralis U1_48CDSP-littoralis_Contig15 60135..60488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.10.1prot_P-littoralis_Contig15.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 60135..60488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.10.1

>prot_P-littoralis_Contig15.10.1 ID=prot_P-littoralis_Contig15.10.1|Name=mRNA_P-littoralis_Contig15.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MSFSSDFTPTQRMIMFYTACLPARLSLAAFVRRFGGNPVLRSIVVVLSCG
TYFFNAHKMRHGAGGSDVWWCRPVHMLSGLSVAISLIASSDTRIPSAVLL
ADAMIGIGTSIVKKPFR*
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mRNA from alignment at P-littoralis_Contig15:60135..60488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.10.1 ID=mRNA_P-littoralis_Contig15.10.1|Name=mRNA_P-littoralis_Contig15.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig15:60135..60488+ (Pylaiella littoralis U1_48)
ATGTCGTTCTCGTCCGACTTTACGCCGACGCAGAGGATGATCATGTTCTA
CACGGCATGCCTGCCAGCAAGGCTGTCTCTCGCCGCCTTCGTGCGACGGT
TCGGGGGCAACCCCGTGCTGAGATCGATCGTGGTCGTTCTCAGCTGCGGC
ACTTACTTCTTCAATGCGCACAAAATGCGGCACGGTGCCGGTGGCTCTGA
TGTCTGGTGGTGCCGCCCGGTACACATGTTGTCCGGGCTGAGCGTGGCGA
TATCTTTGATTGCTTCTTCGGACACGCGCATCCCGTCCGCCGTGCTTCTC
GCCGATGCGATGATCGGCATAGGGACGTCGATTGTCAAAAAACCTTTCCG
GTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:60135..60488+

>mRNA_P-littoralis_Contig15.10.1 ID=mRNA_P-littoralis_Contig15.10.1|Name=mRNA_P-littoralis_Contig15.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig15:60135..60488+ (Pylaiella littoralis U1_48)
ATGTCGTTCTCGTCCGACTTTACGCCGACGCAGAGGATGATCATGTTCTA
CACGGCATGCCTGCCAGCAAGGCTGTCTCTCGCCGCCTTCGTGCGACGGT
TCGGGGGCAACCCCGTGCTGAGATCGATCGTGGTCGTTCTCAGCTGCGGC
ACTTACTTCTTCAATGCGCACAAAATGCGGCACGGTGCCGGTGGCTCTGA
TGTCTGGTGGTGCCGCCCGGTACACATGTTGTCCGGGCTGAGCGTGGCGA
TATCTTTGATTGCTTCTTCGGACACGCGCATCCCGTCCGCCGTGCTTCTC
GCCGATGCGATGATCGGCATAGGGACGTCGATTGTCAAAAAACCTTTCCG
GTGA
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