mRNA_P-littoralis_Contig15.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.7.1
Unique NamemRNA_P-littoralis_Contig15.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: D8LP59_ECTSI (N/a n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP59_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.310e-37
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:    1 MARDIAFGSAYKKEIAVTSKLEGQTMSPVRKKELLEKIRSKRRVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCCCGC 270
            MARDIAFG+ YK+E+    +   + +SP R+KELL+KIR K+RVVFFG+GQFGHG+RG CPRKALIRALGVLCPVVLVDEFRTSKCCC C
Sbjct:  543 MARDIAFGNTYKQEVRKEQRSSAEPLSPERRKELLKKIRDKKRVVFFGNGQFGHGARGACPRKALIRALGVLCPVVLVDEFRTSKCCCSC 632
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: A0A835YYB9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.770e-18
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:  127 RVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCCCGC 270
            RVVFFG+ QFGHGSRGP PRKALIRA+ +L PVVL+DEFRTSK CCGC
Sbjct:  664 RVVFFGNAQFGHGSRGPLPRKALIRAIALLVPVVLMDEFRTSKACCGC 711
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: A0A835ZC03_9STRA (OrfB_Zn_ribbon domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC03_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.090e-17
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:  127 RVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCCCGC 270
            RVVFFG+ QFGHGSRGP PRKALIRA+ +L PVVL++EFRTSK CCGC
Sbjct:  332 RVVFFGNAQFGHGSRGPLPRKALIRAIALLVPVVLMNEFRTSKACCGC 379
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: A0A835YYX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYX5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.450e-17
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:  127 RVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCCCGC 270
            RVVFFG+  FGHGSRGP PRKALIRA+ +L PVVL+DEFRTSK CCGC
Sbjct:  659 RVVFFGNALFGHGSRGPLPRKALIRAIALLVPVVLMDEFRTSKACCGC 706
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: A0A835Z394_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z394_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.540e-17
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  127 RVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCCCGC 270
            RV FFG+ QFGHGSRGP PRKALIRA+ +L PVVL+DEFRTS  CCGC
Sbjct:  701 RVAFFGNAQFGHGSRGPLPRKALIRAIALLVPVVLMDEFRTSMTCCGC 748
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: A0A835Z8K6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8K6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.710e-11
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  118 SKRRVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCC 261
            S R+VVFFG  +FG GSRGP PRK LIR L  L PVVL DEFRTS  C
Sbjct:   79 SVRKVVFFGKAEFGSGSRGPMPRKRLIRHLACLAPVVLGDEFRTSITC 126
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: A0A836CHE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHE2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.060e-10
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  127 RVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCC 261
            RVVFFG  +FG GSRGP PRK LIR L  L  VVL DEFRTS  C
Sbjct:  106 RVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITC 150
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: A0A836C8P7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.260e-10
Identity = 31/45 (68.89%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  127 RVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCC 261
            RVVFFG  +FG GSRGP PRK LIR L  L  VVL DEFRTS  C
Sbjct:  569 RVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEFRTSITC 613
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: A0A835YQT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.750e-9
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  118 SKRRVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCC 261
            S R+VVFFG  +FG GSRGP PRK LIR L  L PVVL +E RTS  C
Sbjct:  255 SVRKVVFFGKAEFGSGSRGPIPRKRLIRHLASLAPVVLTNEHRTSITC 302
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BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Match: A0A835Z5K2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.370e-9
Identity = 30/45 (66.67%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  127 RVVFFGDGQFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCC 261
            RVVFFG  +FG GSRGP PRK LIR L  L  VVL DE+RTS  C
Sbjct:  616 RVVFFGKAEFGSGSRGPIPRKRLIRHLACLAAVVLTDEYRTSITC 660
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LP59_ECTSI1.310e-3773.33N/a n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A835YYB9_9STRA2.770e-1881.25Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZC03_9STRA1.090e-1779.17OrfB_Zn_ribbon domain-containing protein n=1 Tax=T... [more]
A0A835YYX5_9STRA2.450e-1779.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z394_9STRA8.540e-1777.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8K6_9STRA2.710e-1168.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHE2_9STRA4.060e-1068.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8P7_9STRA9.260e-1068.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQT5_9STRA1.750e-964.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5K2_9STRA2.370e-966.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:49286..49555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size271
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.1238172-CDS-P-littoralis_Contig15:49285..495551680789709.1238172-CDS-P-littoralis_Contig15:49285..49555Pylaiella littoralis U1_48CDSP-littoralis_Contig15 49286..49555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.7.1prot_P-littoralis_Contig15.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 49286..49555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.7.1

>prot_P-littoralis_Contig15.7.1 ID=prot_P-littoralis_Contig15.7.1|Name=mRNA_P-littoralis_Contig15.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MARDIAFGSAYKKEIAVTSKLEGQTMSPVRKKELLEKIRSKRRVVFFGDG
QFGHGSRGPCPRKALIRALGVLCPVVLVDEFRTSKCCCGC
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mRNA from alignment at P-littoralis_Contig15:49286..49555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.7.1 ID=mRNA_P-littoralis_Contig15.7.1|Name=mRNA_P-littoralis_Contig15.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig15:49286..49555+ (Pylaiella littoralis U1_48)
ATGGCAAGGGATATCGCGTTTGGTAGTGCGTACAAGAAAGAGATTGCCGT
AACGTCGAAGTTGGAGGGCCAGACAATGTCTCCGGTTAGGAAGAAGGAGC
TGCTCGAGAAGATTAGGTCAAAGAGGAGAGTCGTGTTTTTCGGAGATGGT
CAGTTCGGCCATGGTTCCAGGGGGCCTTGCCCTAGGAAAGCATTGATCAG
AGCTCTAGGCGTTTTGTGTCCGGTAGTCTTGGTAGACGAGTTTCGCACAT
CAAAGTGCTGCTGTGGTTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:49286..49555+

>mRNA_P-littoralis_Contig15.7.1 ID=mRNA_P-littoralis_Contig15.7.1|Name=mRNA_P-littoralis_Contig15.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig15:49286..49555+ (Pylaiella littoralis U1_48)
ATGGCAAGGGATATCGCGTTTGGTAGTGCGTACAAGAAAGAGATTGCCGT
AACGTCGAAGTTGGAGGGCCAGACAATGTCTCCGGTTAGGAAGAAGGAGC
TGCTCGAGAAGATTAGGTCAAAGAGGAGAGTCGTGTTTTTCGGAGATGGT
CAGTTCGGCCATGGTTCCAGGGGGCCTTGCCCTAGGAAAGCATTGATCAG
AGCTCTAGGCGTTTTGTGTCCGGTAGTCTTGGTAGACGAGTTTCGCACAT
CAAAGTGCTGCTGTGGTTGC
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