mRNA_P-littoralis_Contig15.269.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.269.1
Unique NamemRNA_P-littoralis_Contig15.269.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:1026891..1028008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size299
Hectar predicted targeting categoryother localisation
Exons3
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.4436936-CDS-P-littoralis_Contig15:1026890..10269851680789708.4436936-CDS-P-littoralis_Contig15:1026890..1026985Pylaiella littoralis U1_48CDSP-littoralis_Contig15 1026891..1026985 +
1680789708.455489-CDS-P-littoralis_Contig15:1027405..10275281680789708.455489-CDS-P-littoralis_Contig15:1027405..1027528Pylaiella littoralis U1_48CDSP-littoralis_Contig15 1027406..1027528 +
1680789708.4714475-CDS-P-littoralis_Contig15:1027929..10280081680789708.4714475-CDS-P-littoralis_Contig15:1027929..1028008Pylaiella littoralis U1_48CDSP-littoralis_Contig15 1027930..1028008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.269.1prot_P-littoralis_Contig15.269.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 1026891..1028008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.269.1

>prot_P-littoralis_Contig15.269.1 ID=prot_P-littoralis_Contig15.269.1|Name=mRNA_P-littoralis_Contig15.269.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MPFSLPPALPSRSQQYCRRVHGLFIWGNCRISGGCNRQGEGEGTSSPCCF
CCADGELTRQQHSSGGSFSPRCRCGCFAAEHAPHHPTPDPGPCCEPLRH
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mRNA from alignment at P-littoralis_Contig15:1026891..1028008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.269.1 ID=mRNA_P-littoralis_Contig15.269.1|Name=mRNA_P-littoralis_Contig15.269.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1118bp|location=Sequence derived from alignment at P-littoralis_Contig15:1026891..1028008+ (Pylaiella littoralis U1_48)
ATGCCTTTCAGCTTGCCACCTGCTTTGCCTTCCCGAAGTCAACAATACTG
TCGGCGTGTGCACGGGCTGTTCATCTGGGGCAACTGCCGCATCAGGTAAG
CGAAGACATAGTACTCAGTCTTGTGGATGGGGATTTTCCGAACATAGGAC
GCGGTCTCTCGGCATCGATCCAGGTAATATACTCGTAGTCGCCTGTGTCC
TGAAACACGAGTTTGAAAATAAAAAACGTCGACCTACATTCGCGGGTCCC
TGCAATACACACAGCATGCAGTACTTCAGGCTAGGATACAAGCGCGTGCT
TTATCACACAAGCTTAGGGTTCGTGTAAGCGGTGTAGCCCTCACCACTCG
CATTGACTCGCGCACTGGGAAACCCACGTACTCCGGTGATTTCTGCTTTG
ACTTCTCTTTACTTTTCGCGCCCCAATTGGTTGGTGTTTGGTGTTCAAAA
ATCTCGATTTATGTCATGCATCCCTCTGACGAAACTCTACACGTCACATG
CGCATCTTTTCACAGCGGTGGATGTAACCGGCAAGGGGAAGGGGAAGGGA
CCAGCTCTCCCTGCTGCTTTTGTTGCGCAGACGGCGAACTCACCCGCCAA
CAGCACTCCTCAGGCGGCAGCTTCAGCCCTAGGTGCAGGTAATATACTCA
TATACTTAGTACTTGTATTAAAATGGAACTTGATTTTTTAAAAGTCGAGA
AAATTTCAACGTCTCTTCGGTTGTTGACCGTATGATAGTTTTTTTTGTCT
GTCACATGTGCTTTTAAGCACTTCGTAAATTATACTCAGAGTATTTGCGT
AGAATTTGAGGTTAGGGTCAAAGAGGTCACCTCCGTTGGAATACGGCGGT
GAAACCGCAAGGAAGTTGTTGTTTACTCTCGAAAACCGAAATCGCCCTGT
ATTCCTGTGACAAACCTTCACAGTGAGTTTGACTCTTTTGTAGCCTTCTG
TGTATCCTTCTGTGTTCGAGTCTTATTTTCGCTTTGACCACAGCAGTAGA
AACACTCTTTCCGCCCCCCGCTCCTCAACCGTCGTCCAGGTGCGGCTGTT
TCGCAGCCGAACACGCTCCCCACCACCCCACTCCAGACCCCGGCCCCTGT
TGTGAACCCCTACGCCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:1026891..1028008+

>mRNA_P-littoralis_Contig15.269.1 ID=mRNA_P-littoralis_Contig15.269.1|Name=mRNA_P-littoralis_Contig15.269.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig15:1026891..1028008+ (Pylaiella littoralis U1_48)
ATGCCTTTCAGCTTGCCACCTGCTTTGCCTTCCCGAAGTCAACAATACTG
TCGGCGTGTGCACGGGCTGTTCATCTGGGGCAACTGCCGCATCAGCGGTG
GATGTAACCGGCAAGGGGAAGGGGAAGGGACCAGCTCTCCCTGCTGCTTT
TGTTGCGCAGACGGCGAACTCACCCGCCAACAGCACTCCTCAGGCGGCAG
CTTCAGCCCTAGGTGCAGGTGCGGCTGTTTCGCAGCCGAACACGCTCCCC
ACCACCCCACTCCAGACCCCGGCCCCTGTTGTGAACCCCTACGCCAC
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