mRNA_P-littoralis_Contig15.157.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.157.1
Unique NamemRNA_P-littoralis_Contig15.157.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:531651..535733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.3141623-CDS-P-littoralis_Contig15:531650..5317321680789708.3141623-CDS-P-littoralis_Contig15:531650..531732Pylaiella littoralis U1_48CDSP-littoralis_Contig15 531651..531732 -
1680789708.3286903-CDS-P-littoralis_Contig15:535649..5357021680789708.3286903-CDS-P-littoralis_Contig15:535649..535702Pylaiella littoralis U1_48CDSP-littoralis_Contig15 535650..535702 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.3428657-UTR-P-littoralis_Contig15:535702..5357331680789708.3428657-UTR-P-littoralis_Contig15:535702..535733Pylaiella littoralis U1_48UTRP-littoralis_Contig15 535703..535733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.157.1prot_P-littoralis_Contig15.157.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 531651..535702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.157.1

>prot_P-littoralis_Contig15.157.1 ID=prot_P-littoralis_Contig15.157.1|Name=mRNA_P-littoralis_Contig15.157.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
MRTLTPLNPRPSSRVRQRHVRKVLLSHEEHAHAKLPFLSGAVAEQ
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mRNA from alignment at P-littoralis_Contig15:531651..535733-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.157.1 ID=mRNA_P-littoralis_Contig15.157.1|Name=mRNA_P-littoralis_Contig15.157.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4083bp|location=Sequence derived from alignment at P-littoralis_Contig15:531651..535733- (Pylaiella littoralis U1_48)
TCCAAGAAAAAGGCAGGGCGCCATAATCGGGATGAGAACACTCACCCCAC
TGAACCCACGACCATCGTCGAGGGTCAGGCAGAGGTGAGAGCTGTCAGAC
GTGTCGTAGTAGCGCTCGCATGGAATCGTGAGGTAATCGATTGCTCATCC
GTATGACACGGCAGTCGTAAGTGCGCGCTCTGAAAATGCTCTCATTGTTT
CATACCAAGGGGTTGAAATTCCCAGTCCAGTTCGAAACTTCTTTCCTCCC
CGTTGATTCTAAATGGAACTGCACTTCTAAATCCAGCCCGAGTAGGACAG
CAGTACTCGCATCATAGCAGTGCAGCAATCGAACAGGCCGATTCACGGAA
AAACTCCAACTGCTGTAGTCAACATTATGCAAGCATGTTTACGGGCCCTT
GCGTGCACAGCAGTTTCATACGGTCGAGGTTTTTTCTTTTCTTCTTCCTT
CGATGTACTTCGAAATGTATACTCGGAGTACAAACGTATTTCGGGACTAA
CCTCGTCACCTGAGACCCCGGATACCAGGTGAAACAATTAAAGAAGAAAT
TAAACTGGACAGCAGTACGAAATGTTTCAAGAGACAGAATATGCATGCGA
AATTTCCACAAATATCTGGGTGAACTCACAAAAATCGCGCGATAAAATGC
TCGTCAGTAAAACCCTAACCCTAATATGCCACGATTTACTTGAATTTGAA
CCGAATCGGGTCTTTTTGGATTGTATCACGAAGACACGTTCCTTATACCC
AAAAGAGAGACCTGCGTGTTCGAAAACATGATATGAAGTACACGTCGTAC
ATCCCTTGTTCATTGTGTATGGAATTTAGTGTTGAAAGCCTGATTTTGTT
TTGTGGAGGGGGTGATAAATATATGACGTCATTCCGTGAATAAGGTAAAA
AACACACACAACCGCCCCTAGCGCCACCACTAGAGCCTTCAACAAAAATA
CGAGAATGTCACGACCTTCCCTTATTGACCGCTCCACTATGGTACGAGCT
TTGGGTATTTGGGGTTTTTATTGCGTCATGTGTTGTCGTCCCATATTCTC
TGGCACACTAGTCTGCAAACTACAGGCTAGGCCCATCGACGGGGTCACAC
AGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTA
CATGAGATTTTTTCTCGCGAGCAAGGGTCCGCGGTCCCTGCCCTCGTCGG
CGAACCCGAATCTGCTTTTACTAACAGCATGGCCGCTTTCAAAGTATTGC
GTCATGTATCATACGTTGACTATATTTGGGGTTTCTTCCGTGAACCAGCC
TGTATGGTCATTGCGGTGTAGTACAAATAGCGTTTTTTTGTGTACACTCG
GTCTATCTCTCACATGCTACCTTTTTGTGTGTAAGGATCATACAGAACCA
CACGTGTCCCCTTCGTCCTCTGCTGCCGCTTCTCGTGTCACTTTGGTGGA
GACTTAAGACTCCCAGTTCATTCGCTGCTGCCTTATACTGCTGTATCCGA
TCGACATGCGCCTGTCCCACCAGGCCGCTTTCCAAGAATCCTCTGTCTCA
GGCGACAAGCCCGCTGAGGCTTTCATGAAGAGCATTCTATCCGTCCAGAA
CGCGTGGAATAAGAGCCTCATCCACGATGTATTGGTACGGATGTCCGCAG
CATCCAATCTGAGCGTGAGTTTTTCGTCTGAATGAGATGTGTTCTCTAGA
TATGACGAGTGCCTGCTACAGCATCACTATCTTCGTATATCAGACACACG
AAGCTTTGAAGGTTTACATAACCCTTCCCCACGGCTTCGGTTGCATTATG
TCTCTTTATGTGTAAGTTGGTGACAGCTGTCGATCTCCGTACGGGGCGCA
GAAGTAATCAACTCGTAAAAATTGCCTTGAGTTCAGCAACACGTGAATAC
CGGTAGTCAAAATCCCGCGTCGAGGTATCGAGTTTTCATCTTGAATTTAT
GATTTGACGGCGCGTTTGCCACCTGTTTTCCCTCGTAGCACTACGTAGCA
TCTCCAAAAGAGTCCAGAAACATGAACATGAACACTTGATGGTATGTTTA
TGTACGCGCGTATGTCACTGGTAGCTGTTGTACTTGGAAGTACATGCTTA
TGTCATTTACTCAGTTCGTGACTTCTGTGACATCGGCGCAAGAGGGCGCG
CTGTGGTGTAGTGCAATACCCGTTTCCAACGCAACCAAACCCGACATGCT
TCCCCTTCTTGTCACTATACGGGTGTGTTGGTCAGTTGTTGCCTTTTTAT
ACTACCTGGTTCAGTACAAGTATATTTCTTGCGGTTAGTTGGTATCAAAG
CAGATGCACCCCCCCCCTCCTTCCCTGAAATATGAGATGTATTGCCGGTG
GTGTTTTTTTGGTGGACGTGTCCGATGAAACAAGAATAGGTCGTCCGAGC
CAGACGTCCCTTTGTGCTTTCGCCTGATAGTTTCCAACATGAACCACCGG
CAGGAAATCGCTAAGGCCAATACCCACACCCACCAAAGTTGCGCGAAAAA
CGGATTGTACTCTACGATAGGTATATGATCGCGTTTGGTGTCCCAGGGAC
TTGGGTACTGCTTGGCGTTGTCTTCTGTTGTGCTACAAACGTAGCCGTTC
AGGCCTCAGGGTTTCACAGGGGGGGGGGGGGTACCCCTATGCCGCGCTGT
ACGCCGCCGCGTCCCACTGCTGATGACCCCCCCGGGGTTCTCCGCCCTGC
TCAACTACCGTACACGACGCAGATTGTAGACTCGGAAGCGTTGCAGACCC
CAAAAAAACCGAGGACGTCCGGAGGTTTTGTGTCTGCGAAGAGCGCGGCG
TTCCACAAAACGCTGTTCTTGGTCGAGAGGTTCCACCACCAGGACATTCA
CCCCCTCAGCGTTGACAGGGACCCGGTGATGAAGATGGCTCATCTTCTCG
ACGCTACCACAACGTCCATTATCACAAAGGACGAGACAATCGGTAAGGCC
TTCATATCGAAAAAATTCCTTACGATGGCGACCTGTGACTCCTTTAAAAC
ACCAAAGGGTCATTTTCAGTGTACGTCGTCGTCCCCCCGCCCCCCTCCCT
CCTCCTGCCGGGTCGCCTCCTGTCCCCTCAATACTTTGCGAGAGAATGAA
CAGTTGACACCCCCCTCCTCATCCCCACGTATTCCAAAAGCTGTAAAACC
GCCGGAACACCACGGGGATCTTCCATCATAAAAGAAAACAAATTAATGTC
CCGTCGACCTTCCCTCTCATTCCGGGTTTTCATTTTTCGCGGTGATGGCG
GTAAATTCGCGTTTCGCGGCAGCCGGACAGACAACACGTCCGGACCGGCT
GTCCAGATTGGTGTTTTTTTCTTTGATTTGTTACGGTGACGGGTTTTATC
GCATCGTGCAATCACAGGACATGTGTCCAACATCCTGACGTGTTGGTGAA
TGCTTTGCTGTTCCCGGACATGCTGTTGAAGCCCCGGTGGCTCCGACCTT
TTTGGCGTAAGACCCTCCCCGCTGCATTTCAGACACCCGTGGTGGTCGTC
TTCCCCAAAAAGCTCCGATCGCCCCCAAAATGCCTTGAAGAATATTACGT
CTGACGGCTCGGATACCTGCTGGACTCAACTTGAGTTACAACCAATACAT
CCGCGCCATTAACTACGGCGTCGAAGCTTTTTGTGGTGCGATACTCCCGT
GCGCACCTTGCACTCGGTCGATTGTTTTCAAATTTGGCATTGTGAATTTC
ACCATAGCGAGAACAGAGGTGATGGTCACGTAAATGCCCTCGATGTTTAG
GGGACACTCGTTTACATGTATGGTGTTATCCCGTCGTTACAGTCGGCAGG
GAGATTCTCGCCGTTGCTGGGAAGTAAATGCTGATAGCAGGAAATTTCCT
GCTGTATTTCACACATGAACCAAGTTTGACCTTTTTCTGCTCGTACTGGA
GTTGGTGCCAGCAGAGTGTTTGGCTGCAATCGAATTGTAATTTTCCCCAC
CCGCCCCACGTATTATTGCAAACCGTTTCCCCTGTATCCTCTTCATGGCA
GACATGTACGCAAAGTTCTTCTTTCCCATGAAGAGCACGCTCATGCGAAA
CTTCCGTTTCTAAGTGGCGCGGTGGCTGAGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:531651..535733-

>mRNA_P-littoralis_Contig15.157.1 ID=mRNA_P-littoralis_Contig15.157.1|Name=mRNA_P-littoralis_Contig15.157.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig15:531651..535733- (Pylaiella littoralis U1_48)
ATGAGAACACTCACCCCACTGAACCCACGACCATCGTCGAGGGTCAGGCA
GAGACATGTACGCAAAGTTCTTCTTTCCCATGAAGAGCACGCTCATGCGA
AACTTCCGTTTCTAAGTGGCGCGGTGGCTGAGCAA
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