mRNA_P-littoralis_Contig15.154.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.154.1
Unique NamemRNA_P-littoralis_Contig15.154.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:529164..530415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size305
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.243919-CDS-P-littoralis_Contig15:529163..5293741680789708.243919-CDS-P-littoralis_Contig15:529163..529374Pylaiella littoralis U1_48CDSP-littoralis_Contig15 529164..529374 -
1680789708.259926-CDS-P-littoralis_Contig15:530321..5303981680789708.259926-CDS-P-littoralis_Contig15:530321..530398Pylaiella littoralis U1_48CDSP-littoralis_Contig15 530322..530398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.2712884-UTR-P-littoralis_Contig15:530398..5304151680789708.2712884-UTR-P-littoralis_Contig15:530398..530415Pylaiella littoralis U1_48UTRP-littoralis_Contig15 530399..530415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.154.1prot_P-littoralis_Contig15.154.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 529164..530398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.154.1

>prot_P-littoralis_Contig15.154.1 ID=prot_P-littoralis_Contig15.154.1|Name=mRNA_P-littoralis_Contig15.154.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MTPLKAFALCPKMTMDAPWSPATIDRWLQIDLNTDSSGVSPRSTGDKMMA
RERVKGGIDCHSWTKVDASTTVVGGISMLDAARACCVSVVALEVP*
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mRNA from alignment at P-littoralis_Contig15:529164..530415-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.154.1 ID=mRNA_P-littoralis_Contig15.154.1|Name=mRNA_P-littoralis_Contig15.154.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1252bp|location=Sequence derived from alignment at P-littoralis_Contig15:529164..530415- (Pylaiella littoralis U1_48)
TCTACAGCGTCAGACTCATGACTCCCCTCAAGGCATTCGCCTTGTGTCCG
AAGATGACGATGGATGCTCCTTGGTCTCCAGCAACTATTGACAGGTATAA
TGATTATATTATCGGTCAACGTTATTCTGGTCTGGCGTTTTGGCCCCCCT
ACTCAAATCCAACCAGGGAACCCCCCTACCCCCACCCGTCAACAGCCCTG
TCGGACACATCATGCGACAGCACCAACCAGAACTCGACCCCTGGGATACA
GATGTAGATAATACCTGATGAAGCGTGTGCTCCTATGTTATCAAGTTGGC
CAAAAACGTTTGGTGGCAGTGGGTGCCGGCTGTGGCAAGATTTTGGCGGC
GGTGTATGTTGGAGTCGGAAAACAGATGAGACGAAATAACGGGCTTTGCT
GCCGATTTTCCGGCCAAAAATAGGCTCGGAGAGCGTATTTGTCACCTGAT
TTTTCTACCTCAACCCACACCGCCGCCGAAACCTCGCCACAGCCGAAGCC
CACACCCACCAAGTTTCCTGTGGCCAACATGAGAACACTAGAGCGTACCC
TCCAACAGTTTTCGTCTTGATTGATGTCCCAGCGGTTGGTGCTGTCTCCT
GTTGTGCTCAAGAAGCAGCTTTCAAACCGTTTGGGCTCTCTGTTATTTGG
GGGGCGGGGGCGGTAGCTTTGGAGAAGCAACGCAGGACCAAATAACGGAG
CCGCAAAGAAACGGTCTAAAGAGTGTGTACACAAATCGTATGTTGTGATT
TTTGTGCCTTTGTAGCTCCGGGAATGCACGCCCACATTTTGTCCCTCATG
CACATCCTCTCCTCCCAACCTTCCGACCCATTTCCGGTCCCTTGTTATCA
CGTTCCGCTGCCCCTCGGCCTGTTCGGTTTGGACATGTTAATCCTCTCGC
TGGACGCCGCTCTACTCCACTCCCTTATGCTTCATACAGCTCACAGAACT
GTAGATGTCATGAAACTGACAATTCACCTGCCATCATCTCAAAGAACCCC
CGTTTCCTCACCTCTGTCTCTAATTGTGGCTTTGTAATCAGGTGGCTACA
GATAGACCTCAACACCGACTCGAGTGGTGTTTCACCACGTTCTACGGGAG
ACAAGATGATGGCGAGAGAGAGAGTAAAGGGAGGAATCGACTGTCACAGT
TGGACAAAAGTTGATGCAAGTACTACAGTTGTAGGTGGAATATCCATGCT
TGACGCAGCACGCGCCTGTTGTGTAAGCGTTGTAGCACTCGAGGTGCCTT
GA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:529164..530415-

>mRNA_P-littoralis_Contig15.154.1 ID=mRNA_P-littoralis_Contig15.154.1|Name=mRNA_P-littoralis_Contig15.154.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig15:529164..530415- (Pylaiella littoralis U1_48)
ATGACTCCCCTCAAGGCATTCGCCTTGTGTCCGAAGATGACGATGGATGC
TCCTTGGTCTCCAGCAACTATTGACAGGTGGCTACAGATAGACCTCAACA
CCGACTCGAGTGGTGTTTCACCACGTTCTACGGGAGACAAGATGATGGCG
AGAGAGAGAGTAAAGGGAGGAATCGACTGTCACAGTTGGACAAAAGTTGA
TGCAAGTACTACAGTTGTAGGTGGAATATCCATGCTTGACGCAGCACGCG
CCTGTTGTGTAAGCGTTGTAGCACTCGAGGTGCCTTGA
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