mRNA_P-littoralis_Contig15.141.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.141.1
Unique NamemRNA_P-littoralis_Contig15.141.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:496712..497994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size336
Hectar predicted targeting categoryother localisation
Exons3
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.1887472-CDS-P-littoralis_Contig15:496711..4968511680789708.1887472-CDS-P-littoralis_Contig15:496711..496851Pylaiella littoralis U1_48CDSP-littoralis_Contig15 496712..496851 +
1680789708.2008386-CDS-P-littoralis_Contig15:497392..4974561680789708.2008386-CDS-P-littoralis_Contig15:497392..497456Pylaiella littoralis U1_48CDSP-littoralis_Contig15 497393..497456 +
1680789708.209611-CDS-P-littoralis_Contig15:497863..4979231680789708.209611-CDS-P-littoralis_Contig15:497863..497923Pylaiella littoralis U1_48CDSP-littoralis_Contig15 497864..497923 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.2199802-UTR-P-littoralis_Contig15:497923..4979941680789708.2199802-UTR-P-littoralis_Contig15:497923..497994Pylaiella littoralis U1_48UTRP-littoralis_Contig15 497924..497994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.141.1prot_P-littoralis_Contig15.141.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 496712..497923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.141.1

>prot_P-littoralis_Contig15.141.1 ID=prot_P-littoralis_Contig15.141.1|Name=mRNA_P-littoralis_Contig15.141.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
VHQDAAKFLRVLLVCLVGDKAGRVPSCPTWLTHGATSERVLLEGLRRTRK
SSGSTACNPVALKREHEQQQRSAPGLDSIAASTPSRS*
back to top

mRNA from alignment at P-littoralis_Contig15:496712..497994+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.141.1 ID=mRNA_P-littoralis_Contig15.141.1|Name=mRNA_P-littoralis_Contig15.141.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1283bp|location=Sequence derived from alignment at P-littoralis_Contig15:496712..497994+ (Pylaiella littoralis U1_48)
GTACACCAGGACGCTGCAAAGTTCCTGCGTGTGCTGCTGGTTTGTTTAGT
GGGGGATAAGGCTGGTCGTGTGCCTTCGTGCCCGACGTGGCTCACGCATG
GCGCCACTTCCGAGAGAGTGCTGCTCGAAGGGCTACGACGGTACGCCAAG
GTGAGAACACCTAACCCTAACCCAACGTTTGTTGTTATCCATGTATGTAT
TCAGCTCCCGTCCTGAGGCAAGCCGCGAGAGAGTGTTGGCTGAGTGTTGT
TGGGGGACTGCGCGCGTGAGGCGGGTACAGTAAAAAAGATGGAAGCCCGA
CCACTCCCCCACGCCGACCGTACAGCACGAGCTCGCCTGTGCCACACAAC
ACTTTCCGCCAAACGTTCGGGCTACCGTTGAAATAGGCTGTGCCGCAAGG
TGACTGTTTTTATTCCACACATTATTTTTGAAGGCCTTGAAAGACACCGT
CTTAGCCCAGGGTTATCTTTCGGGCTGGAAAAATGGTTTGTCGGCTTTTT
TGCAACAGCCGTTATCATGGGAGATAACCATAATCTATCTTCACCAACAC
GTCCGTATTGACGGTCCAGCTCGTATTTGGATGAGAAATATATTATAACA
ATATATAGCATGTTCGACGGAGGGCGATTCTGACGGCAAGACTGCACAGT
TAACCCTGTCATTTTCCGTCGTGTGTGTCAGGACAAGGAAGTCTTCTGGG
TCGACGGCCTGCAACCCAGTGGCGCTGAAGAGAGAACACGAGCAGGTGCG
CACATGTTGCGGTCCGTCTTGATATGCGGACGGGTGTCCTGTGACTGGGG
ACGTGGAAATTCGTTGTTCCTGTCCTAGACAGACTGGCTATTTGGTTGAT
ATGTTATGGCGGCGCCCACGGCACCAAATGCACCTTTTGTGAACTCCAAC
GGGGGTTGCGTGTAGAGCAACCTTTGCAGATCGATTTTGGAATTCCGCGT
TAAACAAATGTTTGTGTCGTGCTGTAGAGGTCGCACATCCAGTCCCGAGA
AACAAAAGACACGAGCAATGTCACTATCTCGGCGCAGGACGGATCAGACC
TGACACGGTCAATATTTTCTACCTTCGCTGCCCGCGCTCACGCCCTTGTA
CATATGACTTTTACCTGTGACGTTTTTTGCGTTCACGTTTGCGCGATTGC
AGCAACAGCGGTCCGCGCCGGGGTTGGACTCGATCGCGGCATCTACTCCA
TCAAGGAGCTAGAACTCGCGCTGGCGGTCGGGCGAGCGCCGCACGAGAGT
ACTAAGGAATCCAAGGTTCCTGGGTACGGTGTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig15:496712..497994+

>mRNA_P-littoralis_Contig15.141.1 ID=mRNA_P-littoralis_Contig15.141.1|Name=mRNA_P-littoralis_Contig15.141.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig15:496712..497994+ (Pylaiella littoralis U1_48)
GTACACCAGGACGCTGCAAAGTTCCTGCGTGTGCTGCTGGTTTGTTTAGT
GGGGGATAAGGCTGGTCGTGTGCCTTCGTGCCCGACGTGGCTCACGCATG
GCGCCACTTCCGAGAGAGTGCTGCTCGAAGGGCTACGACGGACAAGGAAG
TCTTCTGGGTCGACGGCCTGCAACCCAGTGGCGCTGAAGAGAGAACACGA
GCAGCAACAGCGGTCCGCGCCGGGGTTGGACTCGATCGCGGCATCTACTC
CATCAAGGAGCTAG
back to top