mRNA_P-littoralis_Contig15.132.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.132.1
Unique NamemRNA_P-littoralis_Contig15.132.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:490225..493107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1764
Hectar predicted targeting categoryother localisation
Exons3
Cds size1761
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.137068-CDS-P-littoralis_Contig15:490225..4917511680789708.137068-CDS-P-littoralis_Contig15:490225..491751Pylaiella littoralis U1_48CDSP-littoralis_Contig15 490226..491751 -
1680789708.1470327-CDS-P-littoralis_Contig15:491777..4919411680789708.1470327-CDS-P-littoralis_Contig15:491777..491941Pylaiella littoralis U1_48CDSP-littoralis_Contig15 491778..491941 -
1680789708.1558213-CDS-P-littoralis_Contig15:493036..4931071680789708.1558213-CDS-P-littoralis_Contig15:493036..493107Pylaiella littoralis U1_48CDSP-littoralis_Contig15 493037..493107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.132.1prot_P-littoralis_Contig15.132.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 490226..493107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.132.1

>prot_P-littoralis_Contig15.132.1 ID=prot_P-littoralis_Contig15.132.1|Name=mRNA_P-littoralis_Contig15.132.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=587bp
YHRPSGTAVHRGEHYWLRTYRVTNPMDATDGRAHARDDDGLMDFEPDEPE
DTAAAAAVSKAAAAAALAAAAATHCCCRSVPDAAAAAAAAAIPETATAAT
AAAAAAAALTDSPAPAPCAAAVAAATTAVPAPASSSGSPSTPPADDLDLQ
AQIDAATLAHVLSLKDSVDIDDDIAIHKLQEEVLEEEARGQRARAAGEAL
AEAERVRLAAEAAAAEKAAADDAKRQAAAAAATEARKQALRLKLIHLKRA
AATQEAANADRRAKEVVRRAAVLALSSAARAPPAVKAAPLPSSSAPSSSS
FSASTSPADVTTPSAARAPPALKTTTLPPSSSPFTMPDAAPAPSSTTPSP
SPAAGAAVTTSAPPADAKTVHAKPSASPSASPPPPSPPVVHAKKPASKKP
ASRKPAAQPSSSSASSSRVAPPARSSSPATAAEIASSPAVGASPSTPAPP
LTYTMTNGDTDFLGFKLSFLHSLSDTSSPLFDGLPEVLALAHSRNRNPAV
TSVGDLLCAGLLDTFSIEDQELLLRLVEYLRSPLSAFRRVKAHPTRLTHY
SGAPVDSPRITHALPATRGRGSSARGGSASSSPRPSP
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mRNA from alignment at P-littoralis_Contig15:490225..493107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.132.1 ID=mRNA_P-littoralis_Contig15.132.1|Name=mRNA_P-littoralis_Contig15.132.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2883bp|location=Sequence derived from alignment at P-littoralis_Contig15:490225..493107- (Pylaiella littoralis U1_48)
TATCATCGTCCATCAGGAACTGCAGTGCACCGGGGTGAGCACTACTGGCT
GCGAACCTATCGCGTGACAAAGTGAGTGTGATCTAGTTTCCACTTCACAT
CTGGCGTTGGCGAATAGAGGCACCGATCGTTTGCTCATCTGGCATCTGGT
TCTGATTTCTCAAAAAACTGAGGTCGCTCCTCACTGAAATCAGTATACAA
AATCGACAGCTGCCTCAGCTCCCGATTCGGTGTCACCACGCGTGTTCATC
CTCACACACTCTTTCCCCATTCGCTTCACTGCTCCTCTCTTGGGATCAAG
AGAGGGACTCAACCCAGTAGATAGCCAGCGCCCTACTCTCGCGCTCGCTC
TGCTTTCATCGCTGCCCATGTTCACATGGCGTAGACATGAGGTGCTCATG
CAGGAGCATCCAGCGCTGATTAAATTTTTTTTTGCCGAAAACAATCCTCT
TGATTTTAGTGGGCTCGATTTGCCATCACCCATAAATCAAGAGCGTGACC
CGATTTCGGGCCTTGTGGATATCCTTCAACTTACTGGCAATCTCCTTCTT
CCTTCTTCGAAGATCACCCTTTCCTTTTCACGCGCACCTGCCGCGACGAT
AGTGCTTTACCCACTGCTGTACGACCTCATCACCGTGTTGGCAAGCGCCT
TTCAACCACGAGCCGTGCTGCTGACTGGCCTGTAGTTATATCGGATGTGC
TTCCATCGACCACACTTGCCCAGCACTTGTTGTTTGGTTTAGCGGGACCT
GAAGTACGTCATGGCCGTCTATGGCTGACGCAGCGGTTCACACCGCTTTT
TGGATTTGTGCATGGAAGCAACTCCGTTGCATTGCCGGATGCCCTGCGTC
GTCTTCCTGAACAACCACTGCGCTTCACGCGTGGAAGCGAGGCCCTGTTC
CACCAAGCGCGAACCGAGTACTGGCTTACTCTGTTTGCTTCGCCGCGGCC
TTCAGATCAAGAGCCTGCTGCGAGCATGTCATCTCGGACAACTGATTTTT
ATATGCTCTCAACTGCTGTATGGCCCTGGAGAAGTGTAATTTTGCAGGCC
TTTTTGAGTTCGCTCTCCACTGCCGCCCGCAATTTTACCGCGCCCTCTTT
TACTGCCGCGGCCCCTTTGTCTCCCGTTTTTTTTTCCTCCACCTTTCGAT
CATCATCTGGCCCCAGCCCGATGGACGCCACCGACGGCCGTGCCCACGCA
CGTGACGACGACGGCCTCATGGACTTCGAGCCGGACGAGCCTGAGGACAC
CGCCGCTGCTGCTGCTGTGTCCAAGGCCGCTGCAGCCGCCGCTCTTGCTG
CCGCTGCCGCCACCCACTGCTGCTGCCGCTGCTGCTGCCGCCGGACGCCG
CTGCAGCTGTGCCGGACGCCGCTGCAGCTGCTGCTGCCGCTGCCATACCC
GAGACTGCTACAGCCGCCACCGCAGCCGCTGCCGCTGCTGCTGCTCTCAC
CGACTCCCCTGCTCCCGCGCCTTGTGCTGCCGCTGTAGCCGCAGCTACAA
CCGCCGTTCCTGCTCCAGCCTCCTCTTCGGGTTCTCCTTCGACTCCGCCC
GCTGACGATCTGGATCTCCAGGCCCAGATCGACGCCGCCACCCTGGCCCA
CGTCCTTTCTCTTAAGGACTCAGTGGATATCGACGACGACATCGCCATCC
ACAAGCTCCAGGAGGAGGTCCTGGAGGAGGAAGCTCGGGGCCAACGCGCA
CGTGCGGCAGGAGAGGCCCTGGCCGAAGCAGAACGTGTTCGCCTCGCCGC
GGAGGCCGCTGCAGCTGAGAAAGCCGCAGCTGATGATGCCAAACGTCAGG
CTGCTGCCGCCGCGGCCACAGAGGCCCGCAAGCAAGCTTTGCGGCTGAAA
TTAATACACCTCAAGCGCGCCGCCGCCACTCAAGAGGCTGCCAACGCCGA
CCGCCGGGCCAAGGAAGTTGTTCGCCGGGCTGCTGTCCTTGCCCTCTCTT
CTGCCGCCCGCGCTCCGCCTGCCGTCAAGGCCGCCCCTCTTCCGTCTTCT
TCGGCGCCGTCTTCCTCGTCTTTTTCTGCCTCGACCTCACCCGCCGATGT
CACCACACCTTCTGCCGCCCGCGCTCCGCCTGCACTCAAGACCACCACTC
TCCCGCCTTCTTCATCGCCGTTCACCATGCCCGACGCCGCGCCTGCGCCT
TCTTCGACGACTCCCTCGCCCTCTCCTGCTGCCGGCGCCGCCGTGACCAC
CAGCGCGCCCCCTGCCGACGCCAAGACCGTCCACGCCAAGCCTTCCGCGT
CTCCTTCGGCGTCTCCTCCACCGCCCTCGCCACCTGTCGTTCACGCCAAG
AAGCCCGCTTCCAAGAAGCCGGCTTCCAGGAAGCCTGCCGCACAACCTTC
TTCTTCCTCAGCTTCGTCTTCGCGTGTGGCTCCGCCTGCCCGCTCTTCGT
CGCCAGCTACAGCTGCTGAGATCGCCTCTTCCCCTGCTGTCGGCGCCTCT
CCGTCCACTCCCGCGCCTCCGCTGACGTACACCATGACCAACGGCGACAC
GGACTTCCTGGGTTTCAAGTTGTCCTTCTTGCACTCCTTGTCCGACACTT
CGTCACCACTGTTCGACGGTCTTCCTGAGGTCCTGGCCCTCGCTCACTCT
CGCAACCGCAACCCCGCGGTCACCTCCGTTGGCGACCTGCTTTGCGCTGG
CCTTTTAGACACGTTCTCCATCGAGGACCAGGAGCTTCTTCTTCGCCTCG
TTGAATATCTGCGGTCTCCCTTGTCGGCGTTTCGGCGCGTGAAAGCGCAC
CCCACCCGCCTCACGCATTACAGTGGGGCCCCCGTCGACTCTCCGCGCAT
TACGCACGCTCTCCCTGCCACACGCGGCCGTGGCTCGTCGGCCCGAGGAG
GATCCGCCTCCTCCAGCCCCCGGCCGAGCCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:490225..493107-

>mRNA_P-littoralis_Contig15.132.1 ID=mRNA_P-littoralis_Contig15.132.1|Name=mRNA_P-littoralis_Contig15.132.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1761bp|location=Sequence derived from alignment at P-littoralis_Contig15:490225..493107- (Pylaiella littoralis U1_48)
TATCATCGTCCATCAGGAACTGCAGTGCACCGGGGTGAGCACTACTGGCT
GCGAACCTATCGCGTGACAAACCCGATGGACGCCACCGACGGCCGTGCCC
ACGCACGTGACGACGACGGCCTCATGGACTTCGAGCCGGACGAGCCTGAG
GACACCGCCGCTGCTGCTGCTGTGTCCAAGGCCGCTGCAGCCGCCGCTCT
TGCTGCCGCTGCCGCCACCCACTGCTGCTGCCGCTCTGTGCCGGACGCCG
CTGCAGCTGCTGCTGCCGCTGCCATACCCGAGACTGCTACAGCCGCCACC
GCAGCCGCTGCCGCTGCTGCTGCTCTCACCGACTCCCCTGCTCCCGCGCC
TTGTGCTGCCGCTGTAGCCGCAGCTACAACCGCCGTTCCTGCTCCAGCCT
CCTCTTCGGGTTCTCCTTCGACTCCGCCCGCTGACGATCTGGATCTCCAG
GCCCAGATCGACGCCGCCACCCTGGCCCACGTCCTTTCTCTTAAGGACTC
AGTGGATATCGACGACGACATCGCCATCCACAAGCTCCAGGAGGAGGTCC
TGGAGGAGGAAGCTCGGGGCCAACGCGCACGTGCGGCAGGAGAGGCCCTG
GCCGAAGCAGAACGTGTTCGCCTCGCCGCGGAGGCCGCTGCAGCTGAGAA
AGCCGCAGCTGATGATGCCAAACGTCAGGCTGCTGCCGCCGCGGCCACAG
AGGCCCGCAAGCAAGCTTTGCGGCTGAAATTAATACACCTCAAGCGCGCC
GCCGCCACTCAAGAGGCTGCCAACGCCGACCGCCGGGCCAAGGAAGTTGT
TCGCCGGGCTGCTGTCCTTGCCCTCTCTTCTGCCGCCCGCGCTCCGCCTG
CCGTCAAGGCCGCCCCTCTTCCGTCTTCTTCGGCGCCGTCTTCCTCGTCT
TTTTCTGCCTCGACCTCACCCGCCGATGTCACCACACCTTCTGCCGCCCG
CGCTCCGCCTGCACTCAAGACCACCACTCTCCCGCCTTCTTCATCGCCGT
TCACCATGCCCGACGCCGCGCCTGCGCCTTCTTCGACGACTCCCTCGCCC
TCTCCTGCTGCCGGCGCCGCCGTGACCACCAGCGCGCCCCCTGCCGACGC
CAAGACCGTCCACGCCAAGCCTTCCGCGTCTCCTTCGGCGTCTCCTCCAC
CGCCCTCGCCACCTGTCGTTCACGCCAAGAAGCCCGCTTCCAAGAAGCCG
GCTTCCAGGAAGCCTGCCGCACAACCTTCTTCTTCCTCAGCTTCGTCTTC
GCGTGTGGCTCCGCCTGCCCGCTCTTCGTCGCCAGCTACAGCTGCTGAGA
TCGCCTCTTCCCCTGCTGTCGGCGCCTCTCCGTCCACTCCCGCGCCTCCG
CTGACGTACACCATGACCAACGGCGACACGGACTTCCTGGGTTTCAAGTT
GTCCTTCTTGCACTCCTTGTCCGACACTTCGTCACCACTGTTCGACGGTC
TTCCTGAGGTCCTGGCCCTCGCTCACTCTCGCAACCGCAACCCCGCGGTC
ACCTCCGTTGGCGACCTGCTTTGCGCTGGCCTTTTAGACACGTTCTCCAT
CGAGGACCAGGAGCTTCTTCTTCGCCTCGTTGAATATCTGCGGTCTCCCT
TGTCGGCGTTTCGGCGCGTGAAAGCGCACCCCACCCGCCTCACGCATTAC
AGTGGGGCCCCCGTCGACTCTCCGCGCATTACGCACGCTCTCCCTGCCAC
ACGCGGCCGTGGCTCGTCGGCCCGAGGAGGATCCGCCTCCTCCAGCCCCC
GGCCGAGCCCG
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