mRNA_P-littoralis_Contig15.100.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.100.2
Unique NamemRNA_P-littoralis_Contig15.100.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.100.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:302088..304913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1430
Hectar predicted targeting categoryother localisation
Exons7
Cds size1332
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.100.2prot_P-littoralis_Contig15.100.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 302088..304523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.9250374-CDS-P-littoralis_Contig15:302087..3026181680789707.9250374-CDS-P-littoralis_Contig15:302087..302618Pylaiella littoralis U1_48CDSP-littoralis_Contig15 302088..302618 -
1680789707.933852-CDS-P-littoralis_Contig15:302848..3029411680789707.933852-CDS-P-littoralis_Contig15:302848..302941Pylaiella littoralis U1_48CDSP-littoralis_Contig15 302849..302941 -
1680789707.9444332-CDS-P-littoralis_Contig15:303165..3032281680789707.9444332-CDS-P-littoralis_Contig15:303165..303228Pylaiella littoralis U1_48CDSP-littoralis_Contig15 303166..303228 -
1680789707.9573803-CDS-P-littoralis_Contig15:303411..3038221680789707.9573803-CDS-P-littoralis_Contig15:303411..303822Pylaiella littoralis U1_48CDSP-littoralis_Contig15 303412..303822 -
1680789707.96906-CDS-P-littoralis_Contig15:303965..3041361680789707.96906-CDS-P-littoralis_Contig15:303965..304136Pylaiella littoralis U1_48CDSP-littoralis_Contig15 303966..304136 -
1680789707.979007-CDS-P-littoralis_Contig15:304460..3045231680789707.979007-CDS-P-littoralis_Contig15:304460..304523Pylaiella littoralis U1_48CDSP-littoralis_Contig15 304461..304523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.9912696-UTR-P-littoralis_Contig15:304523..3045371680789707.9912696-UTR-P-littoralis_Contig15:304523..304537Pylaiella littoralis U1_48UTRP-littoralis_Contig15 304524..304537 -
1680789708.0029266-UTR-P-littoralis_Contig15:304829..3049131680789708.0029266-UTR-P-littoralis_Contig15:304829..304913Pylaiella littoralis U1_48UTRP-littoralis_Contig15 304830..304913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.100.2

>prot_P-littoralis_Contig15.100.2 ID=prot_P-littoralis_Contig15.100.2|Name=mRNA_P-littoralis_Contig15.100.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=444bp
MDAYVLPYYRVRTLKQHEYGRLPDALRVVSAATAAEAENSRQRRGRTAGL
RGKNKRNGIVVLGRLKREETRFNISSEQAKAMFESWEQLTVTDFLAKICS
FDMTDGLPPDSPELARTEGFERLGFASSKPVFKIAGVAFLLHDNPGIDKQ
VVWARVCDLLKDAHLHTHDSRLTLDNIFSGGVIPPEAKTWEATYGRVPTV
FPQPRTMIVVDLDILQYDNDNQYDFDEPSQEGVTAQQQYEEENTGTDEHK
DECIDVSRPSQDFATVQDVKRRARHKLGNLARELVEQGLPGETCSEMGKF
FENMGRVNEIVPLCGHGEVDAQSSMAVSKALEAAVVVGVDGNEPASGDDR
VSHINDREDSDDDDDDTAAVSKVEKVDRVEQETLTDWKTWSVQRSVKIDT
AGITLTLISSITAVFSVIFGLCRCVKQMEPQPQDPKDIERCKRI
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mRNA from alignment at P-littoralis_Contig15:302088..304913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.100.2 ID=mRNA_P-littoralis_Contig15.100.2|Name=mRNA_P-littoralis_Contig15.100.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2826bp|location=Sequence derived from alignment at P-littoralis_Contig15:302088..304913- (Pylaiella littoralis U1_48)
GTTTCGTCCGACTCCATGCTGCGCTCTCCTGATGACGTCGACAAACATCT
AATTTCTGGATAATCGCGCGAGGTTGACTCGGCGGTAATTTTCGTCATGT
CCTCAAAAAGAAATTGAAGTTTCCAAGATGCTCGAGTTGACAACAATGTG
GATTGTCATGGTGGAAGTGAATTGTGACCAGTGTGTGTGATCAACAAGCT
CCAATGTTTCCGAATAAAACTGAAATATTGGCCCCTGTTCTAGAACGTTT
CACGGTAGGAAGTTGTAGCCAAGTGTTTTGTAAAGAATATGCTATTGCAT
TGAGTTTCCCTGAACGTGCTCTTTGTCGCGACGTTTCCCTTCGCGTGCTT
CTGTTTTTATCTCACCGCAAAATTAGAACATATCAGGTGGATGGATGCAT
ACGTGCTTCCGTACTACCGAGTACGAACCCTTAAACAGCACGAATATGGC
AGGGTAAGTCCGCTTGACCAAACGCGCTGATTTCCTTTCTTGATACCTTC
CTCGGAAAGCATTACATCTCTGAGCCACCCACTTTTTGGGTTTGTATAGT
AAACGACTTAAAACGATAGACACCGTGAGAACGCCACAACTACTACAACC
GACAGAGCTTGCACCAGCAGCGGTATTTGCAAATTTTCACATCGATTCGA
ACGGCCTCGGTAAAAAATAGGGTCAGATGCTCCTTGATGCTTATTTCTGT
TGAAGAAAACATAACGGCTGTCGGTAACGATCACTCTTGATTTACGTGTT
CGCATGTTGGTGTAATTGATCGACCAGCTTCCGGACGCATTGAGGGTCGT
GTCTGCCGCTACTGCCGCAGAAGCTGAAAACTCGAGGCAAAGGAGGGGCA
GAACGGCAGGTCTCAGAGGCAAAAACAAGAGAAACGGTATTGTTGTTTTG
GGCCGATTGAAGAGGGAGGAGACACGGTTCAACATCTCAAGCGAACAGGT
AAAAATGTGATGTGATTCTTCGTATTTAGTAACCACTTCTCGCCAAAGGA
TGTATCTGAGAATTTGGATGGTGATGGCCCGGTGAACATGACATATCCTG
CACCGCTGGTTTCGTCTTCACTTAACACTCACGCCATCCAGGCCAAAGCG
ATGTTCGAGTCCTGGGAGCAACTAACCGTCACAGACTTCCTCGCGAAAAT
ATGCTCTTTCGACATGACCGACGGTCTACCGCCTGATTCACCTGAGCTCG
CCAGGACGGAGGGGTTCGAGAGGCTCGGCTTCGCATCCTCCAAACCCGTC
TTCAAGATCGCCGGAGTGGCCTTCCTGCTCCATGATAACCCCGGAATCGA
CAAGCAAGTCGTCTGGGCCCGGGTCTGTGATCTTCTGAAAGACGCGCATC
TGCACACGCACGACTCTCGTCTTACGCTTGACAACATCTTCAGTGGCGGC
GTCATCCCGCCTGAAGCGAAAACATGGGAGGCTACCTACGGTCGCGTTCC
TACAGTGTTCCCGCAACCAAGAACCATGATAGTCGTTGACCTGGACATTC
TGGTGAGATAACTATAAAATACTATGAACACGTGAAGCAGTTAGGGCCCG
CTAATAAGAAAGTTAATTTGGGTTCCAGGCTGGCTTTCTCAAAAAAAGAT
AAAACAGACGGCCACCCCCGAATTAGTCAATTTATTCAAAAACTGTGGTA
CTGACACCATCATTTCATCCCGTTGTACCGTACAGCAATACGACAACGAT
AATCAGTACGACTTCGACGAGCCATCACAGGAAGGCGTCACGGCACAGGT
ACGTTGTAAAAAGATAACAGCAGACGCGTAGTAGGGAGGACTTTCCCCCA
GACTTGATTTTACGTAGCCGAGCCTTGTACGTCGCACTAAATAGGTCTCG
TGTGGCTGACTTTCTAACATCGGCTGGCGCTGATTTCGGAGTGTTTTGTC
TGTTTCACGGATCTGGCCGTCTTGGTCTTACTAAATACATTCCATCGTTT
TTACCGTTGTTGTACCCTACAGCAACAATACGAGGAAGAAAACACCGGCA
CCGATGAGCACAAGGACGAGTGCATCGACGTCAGCAGGCCATCCCAAGAT
TTTGCCACAGTACAGGTACATTATTTACATGTCTCTCTTTAATTAACTCG
GGATTACCAGCTATTAATAGTACATTTACCTGCCGACAAAAAAGTAGAAT
TAGCTTGTGGATAATTGGCAATTATGAGAAGCTAGGACTCTACGCTACGC
GTGTGTCTGTGCGTGCAAAAAATGAGGGTTGATATCTAAAACTTCCACTG
CACTTTTCAATATTGCTTCTTGTCCATCACATTTGCGCTCGGTAGGACGT
GAAGAGACGGGCGAGACACAAACTAGGGAATCTTGCCAGGGAGTTGGTGG
AGCAAGGGTTGCCGGGGGAGACGTGTAGCGAGATGGGCAAGTTTTTTGAA
AACATGGGTCGCGTCAACGAGATTGTCCCTCTTTGTGGTCACGGAGAAGT
GGACGCGCAATCTTCCATGGCCGTCTCCAAGGCGTTGGAAGCGGCCGTCG
TGGTTGGTGTCGACGGTAACGAACCCGCCAGCGGCGACGACCGTGTAAGC
CACATCAACGATCGTGAAGATAGCGATGACGACGATGATGATACCGCTGC
TGTGTCAAAAGTTGAGAAGGTAGACCGGGTGGAGCAGGAAACCCTTACAG
ACTGGAAGACGTGGTCGGTACAGAGATCGGTGAAAATCGACACGGCTGGG
ATCACCTTGACTCTAATTTCTTCCATTACCGCCGTCTTTTCAGTGATTTT
CGGACTGTGCCGCTGTGTCAAGCAGATGGAGCCGCAACCACAGGACCCCA
AGGACATCGAACGCTGTAAGCGAATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:302088..304913-

>mRNA_P-littoralis_Contig15.100.2 ID=mRNA_P-littoralis_Contig15.100.2|Name=mRNA_P-littoralis_Contig15.100.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1332bp|location=Sequence derived from alignment at P-littoralis_Contig15:302088..304913- (Pylaiella littoralis U1_48)
ATGGATGCATACGTGCTTCCGTACTACCGAGTACGAACCCTTAAACAGCA
CGAATATGGCAGGCTTCCGGACGCATTGAGGGTCGTGTCTGCCGCTACTG
CCGCAGAAGCTGAAAACTCGAGGCAAAGGAGGGGCAGAACGGCAGGTCTC
AGAGGCAAAAACAAGAGAAACGGTATTGTTGTTTTGGGCCGATTGAAGAG
GGAGGAGACACGGTTCAACATCTCAAGCGAACAGGCCAAAGCGATGTTCG
AGTCCTGGGAGCAACTAACCGTCACAGACTTCCTCGCGAAAATATGCTCT
TTCGACATGACCGACGGTCTACCGCCTGATTCACCTGAGCTCGCCAGGAC
GGAGGGGTTCGAGAGGCTCGGCTTCGCATCCTCCAAACCCGTCTTCAAGA
TCGCCGGAGTGGCCTTCCTGCTCCATGATAACCCCGGAATCGACAAGCAA
GTCGTCTGGGCCCGGGTCTGTGATCTTCTGAAAGACGCGCATCTGCACAC
GCACGACTCTCGTCTTACGCTTGACAACATCTTCAGTGGCGGCGTCATCC
CGCCTGAAGCGAAAACATGGGAGGCTACCTACGGTCGCGTTCCTACAGTG
TTCCCGCAACCAAGAACCATGATAGTCGTTGACCTGGACATTCTGCAATA
CGACAACGATAATCAGTACGACTTCGACGAGCCATCACAGGAAGGCGTCA
CGGCACAGCAACAATACGAGGAAGAAAACACCGGCACCGATGAGCACAAG
GACGAGTGCATCGACGTCAGCAGGCCATCCCAAGATTTTGCCACAGTACA
GGACGTGAAGAGACGGGCGAGACACAAACTAGGGAATCTTGCCAGGGAGT
TGGTGGAGCAAGGGTTGCCGGGGGAGACGTGTAGCGAGATGGGCAAGTTT
TTTGAAAACATGGGTCGCGTCAACGAGATTGTCCCTCTTTGTGGTCACGG
AGAAGTGGACGCGCAATCTTCCATGGCCGTCTCCAAGGCGTTGGAAGCGG
CCGTCGTGGTTGGTGTCGACGGTAACGAACCCGCCAGCGGCGACGACCGT
GTAAGCCACATCAACGATCGTGAAGATAGCGATGACGACGATGATGATAC
CGCTGCTGTGTCAAAAGTTGAGAAGGTAGACCGGGTGGAGCAGGAAACCC
TTACAGACTGGAAGACGTGGTCGGTACAGAGATCGGTGAAAATCGACACG
GCTGGGATCACCTTGACTCTAATTTCTTCCATTACCGCCGTCTTTTCAGT
GATTTTCGGACTGTGCCGCTGTGTCAAGCAGATGGAGCCGCAACCACAGG
ACCCCAAGGACATCGAACGCTGTAAGCGAATT
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