prot_P-littoralis_Contig15.75.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig15.75.1
Unique Nameprot_P-littoralis_Contig15.75.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length282
Homology
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BLAST of mRNA_P-littoralis_Contig15.75.1 vs. uniprot
Match: Q9J3U4_ESV1K (EsV-1-57 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q9J3U4_ESV1K)

HSP 1 Score: 68.2 bits (165), Expect = 2.040e-9
Identity = 30/41 (73.17%), Postives = 38/41 (92.68%), Query Frame = 0 
Query:  241 SAAFDMSSIGVTAVSYLGSGKWSVHTNDGRFIASFKKDTSK 281
            S++FD+SS+GVT+VSY+G+GKWSV T DG+FIASFKKD SK
Sbjct:  317 SSSFDLSSLGVTSVSYIGAGKWSVQTEDGKFIASFKKDNSK 357
[Close]
BLAST of mRNA_P-littoralis_Contig15.75.1 vs. uniprot
Match: D8LP90_ECTSI (EsV-1-57 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP90_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.870e-8
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0 
Query:  241 SAAFDMSSIGVTAVSYLGSGKWSVHTNDGRFIASFKKDTSK 281
            S++ D+SS GVT+VSY+G+GKWSV T DG+FIASFKKD SK
Sbjct:  278 SSSLDLSSFGVTSVSYIGAGKWSVQTEDGKFIASFKKDNSK 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.75.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q9J3U4_ESV1K2.040e-973.17EsV-1-57 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP90_ECTSI1.870e-870.73EsV-1-57 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.320coord: 211..264
e-value: 3.8E-5
score: 25.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..82
NoneNo IPR availablePANTHERPTHR24023COLLAGEN ALPHAcoord: 52..238
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 184..239
e-value: 1.5E-7
score: 31.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:183594..184637 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.75.1mRNA_P-littoralis_Contig15.75.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig15 183594..184658 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig15.75.1 ID=prot_P-littoralis_Contig15.75.1|Name=mRNA_P-littoralis_Contig15.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp
MNVRAVRAHRQGESEKLQGTTPAPLEILKKTQTPQAPVKITKTELEKILG
GSGVTGPSGPSGPSGPSGPAGPAGPAGPAGPAGPAGPTGQDGQGSGESPP
GPQGPPVDGKTGAAGPRGAAGPAGPAGPAGAKGAGGPAGPKGAGGPAGPK
GAGGPAGPKGAAGPAGPKGADGPKGPAGPAGPKGAAGPAGPAGPAGLKGA
AGPAGPAGPAGADGPAGADGPAGADGPKGPAGPAGPAGSGSAAFDMSSIG
VTAVSYLGSGKWSVHTNDGRFIASFKKDTSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen