mRNA_P-littoralis_Contig1013.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1013.2.1
Unique NamemRNA_P-littoralis_Contig1013.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1013.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1013contigP-littoralis_Contig1013:16517..21224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789354.4640765-CDS-P-littoralis_Contig1013:16516..165981680789354.4640765-CDS-P-littoralis_Contig1013:16516..16598Pylaiella littoralis U1_48CDSP-littoralis_Contig1013 16517..16598 +
1680789354.4799218-CDS-P-littoralis_Contig1013:21142..212221680789354.4799218-CDS-P-littoralis_Contig1013:21142..21222Pylaiella littoralis U1_48CDSP-littoralis_Contig1013 21143..21222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1013.2.1prot_P-littoralis_Contig1013.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1013 16517..21222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1013.2.1

>prot_P-littoralis_Contig1013.2.1 ID=prot_P-littoralis_Contig1013.2.1|Name=mRNA_P-littoralis_Contig1013.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
PSFFLHRVRELLDLGDQPVDMSYYGPQALFCCIPLLSVFPYVLSLPHPLP
MICS
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mRNA from alignment at P-littoralis_Contig1013:16517..21224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1013.2.1 ID=mRNA_P-littoralis_Contig1013.2.1|Name=mRNA_P-littoralis_Contig1013.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4708bp|location=Sequence derived from alignment at P-littoralis_Contig1013:16517..21224+ (Pylaiella littoralis U1_48)
CCGAGCTTCTTCCTCCATCGCGTACGTGAGCTCCTCGATCTCGGTGACCA
GCCAGTCGACATGTCTTACTACGGACCCCAAGGTCAGATACCCTGCTTTT
GCATGCGTATACGGGGCATAATGAGACTCTGTCATGCGTGTCCAGCCTTT
AGCTCTGCATAGCGGCGGCATGTAACAGAGTACTCTATGAGTTGGTGTTT
GCGTTCCAGAACGAGGCAGAACAGAGACTCGCTGCCTCGCTCGACATATA
TACCCACTGGCTGCTCATAACATGGTGTCTAATCCGAGGAAAGTTTGCTC
ACGCAATGCGCGCGACTACACACCTAACATGGTGTCTAATCCGAGGAAAG
TTTGCTCACGCAATGCGCGCGACTACACACCTAACATGGTGTCTAATCCG
AGGAAAGTTGTATGCCCACGCGATACGCGCGACTACACACCTATCATGGT
GTCTAATCCGAGGAAAGTTGTATGCTCTCGCGATGTACACGCCTGTGCTC
ATGTGCTTGGTTGCCGCGTCTGCTCAAATAGCTTTTTGTTCTTTTTTAGT
TTTATCCGCATTTCTAGGGTCGCCCGTGATACTAGTATTTACTACAAAAT
AAATGCTGCTTTTTCCCGCCGTATTTTTATTTTCACATCTATCTGGAGTC
CGTCCTGTCTTTGTACAGCGGTATGACTTTCGACGTCTTTGCACTTCGCA
CTGCTGTATGTGAAGCACGCTGAGAGCCCGGAGCTCTGCGTATGTCTTGC
CCGTCTTTGCACGGCTGTGAACTGCTGTATGCATGTGATAGCCTGCTGAT
TGATGATGCTCGTACGGTGGACAGAGATTTTTTTTTACCATGATATCGTA
CATACTCCGTAGTATGTCTGCCTTATTTTTTTTACTGCTGCTGTACCCCA
CAAATAAATGTTGCTGCGCGCCTGTTGCTATTTTTGAGTGTGTGTACGCA
TGTGTATATGCCCGCGGGTGAATGGGGTTCCATGCTGATGTGGTGCTGGT
ATCACCTGGGAGAGACGTGTGAAGTGTCATGGTGTTGGTAACACCTGGCG
ATAATTCCATGGAGATGGAAGGGAGGCACCGGGACCTTATGGGGTTAGGC
ACGCTCTGATAAGCTCGTGCTCTGAGAATCTATGTCGCCGTATGACGAAA
GCCGGCAATTTTTTATAGGCGTTAAAGTCGAGGCATATGACATTTGACTA
TCACCACGTAGCCGAGGCTTAGCACCCCAAGGTAAGAGGTATGTCCCGAT
CCACTATCACATCAGCTCAGTCTACCCCGAGCGGTGGACAGATATCCTCC
GGTTGAGTATATATATGTGTGCTGTGGGTACAGCGCTTCAGGTATACCGT
ACATGCCCCGCAGCTGCACCGGTTCGCGCTGTGGTTTCAGGCAGGTGTAT
TCCGACATCCATTTTGTTTTCTTCGCACTATAAAAGACTACACACTAAAC
TAAATAGACCTTGAACTTGTATTTTTTTCCCATGTTTTCTATCTTCCGAC
ATGTATTTTTTTTTCTCTTGATATTCTACACGGAATACAACAGACTGGTT
TATGATACGATTAACCAAAATACATCCTTGAACATTTTTTTACATGCAGT
GCCGCCGATCTGCCTTCTGTAATGTACGACTTTTTTTTTGTGTGCCCTCT
GGGTCCCTTGTGGCCCTTCGTGCTTTCTAAACACTAATCTTTTCCTGCTG
TACGACTTTTTCTTTTGTTTCTTTTTTGCCCTGGGTCCCTTGGCCCCTCG
TTTTATTTATTGTTCCTTTTTGACTTTACTATTTTTATGAACACTTTTCG
TTCGTCTTCTAGGACGATACATAGTTTTTTTTTATTTTTGATTCATCCTG
CATGATCTGTGCTTTATTTCACTACATGATCTTTTGATCTATTTCCCTTT
TACCCTTGATGCGTCCCAAAGTTTTCGCCTACCTCACAGCAGTGCTGTTA
CTGAAGTACTTGTACTTGGAATATATACATCTGGAATTAATTTTTCTTCG
TCTTCCCTATTTCGTCCCGCCTTGAAGGTTGAATTTTGTTTTGTTTTGTT
TTTCCATTTTTTTTTTCCAGGATTGATAAAGTATGCTCGACCCAGGAAAG
TCCCAGGTATATGAGAGCTGCCTTCTTCCTGTCGTTGCCGTTTTCATTTT
TATTATATTCCTTGAGAATCTGTGTGTATTGAGTTTTTTCAAAGTTAACA
ACCAAGACTACTACTGCTGTACTCGTATATTATTACTCAGAGCAACAGCA
GTAAAATATCATTGCGATTTTATATCGTACTTTGTCGTGCACGCACGTTA
AACTTACCGTTCCTTCTTGTTTTTTTTTTTCCACTCTCTGAAACAACAGC
AGATCGCGCACTGAATGGCGCACACCTAAACTTTCACCCGATAATTATGC
TTCATGATTTCCCTTCTATTTTGTTTTTCTCCTGTCCCAACAATTGTTTT
TTTCTTGTAAGTTGTTGCTTTGCCTGCCTGGGTTTTCAGTTTACTCTTCC
TTTTCTTCGATGATAATGTTGATTGGAATGCTAGTGCACCGCTACGTCGC
TATGAATGTTTTTTTTCTTCCTTCTGCCTTGACGTGCGAGTCTCTTTTCT
TGCATGCTCCTTGCCAGGACTCTGTATGCTCGACTAAACAGGTTACAGGT
GGATGAGAGCTACTTTTTCCCTGTTGTTGTACTTGTTTTTTTTGTTTTGT
TTCTTCCGTCTCAGGGTCTCTCCGTTTGGTTTGCTTTCGGCGTGTCGTGT
TTCCGTCTTTCTCTTTAACTTGGAGTGCACTGTATGTCGTATGATGTTTA
CCAGGGATGAATGCATGCTCGATCCCAAGAGTTGAAGGTATATGAGAGCT
GACTTCGCCCCTGTTGttTTTTTTCTTTCTTCGTTTTGTTCTCCTCTATT
TTTTTTGTGTCTTCCCCTTCCACTTGATTGAGGTCGCCGCGATAAAATGC
CTAAACACCCGAATCTACACACAGCAGCAGCTATTATTCTTCTTTGTTTT
TGACAGCAGCTATGTCATATATATTTTGTTGTTTATTTTTTCGTTTCTAT
TTTGGTTTTGCTGCCTTTGTCTTGCTTGGTTTATTCCTGAGTTGTGTGTT
TTATCTGGGTTTGTTTCCTCTCTTGGGTGCTTTGAAAATGTCTTGTAtTT
TTTTCTTTTCGTTGTTGGTTTACTGCGGAATACATGTGTGTTTCGATAAT
GGTGATGATCTTATTCTTTTTATTTTGTGATTTTGTTGTGCAAATATCAA
TAAACATCGTACGAAGTATATTTTATCGACTCGCTTGGTTTGATTTCTCT
TTCTCTTGCGAAGTTTGGTTTGCAGGTTGGTTTGTTCGACCCCAGGAAGT
GTACACAGGTGACTGAGAGCAGCCTTCCTTTGTTTATTTTTCTTTTATGC
ATTATATTATGAGTCTCGTTTTTTTTTGTTTTAATACATACAGTCGTTTT
TGTTTCGTTTTCATTTTCCTTATTCGCTTCTTGTTGTTTTTTGTTCGTCT
TCTTTTCCCGTCATTTATGTGTGCATGCAGGTTGGTACGTTCGACCCGGA
AAGTATTGAGGTGATTGAGAACTACCTTTCCTTTGTTTCAATACTCTTGT
TTGAATCGACCTCGTCTTCTTTGTTTTCGGCTTGTATTTTTTTGTTCACT
TCGTCTCTGGTTTTATCATACTATCCCTGGCTACATAAATTTTTCTCTTC
GTAATAGGCCAAACAGCCACTCACTTCCGTGTACTGCATAGCACGTTCTT
GACAACACGGAAAATGCGACGACAGACAAGTTATTTTTCTACTTTTTTTT
CTTTCTTCTGGTCTCTTCATTACGTGCCAAACAGCCACTTTAGTGTACTG
CATGGCACATTCTTGACAACAAGGAATGCGACGATGGTATTATTTTTTTC
AATATTATTCTTGATCGTTCAAAGTTGTTTTCGTATGAATGACGCAGCAG
TATTGCATATTACATTCCTCATGGCGTTCCATATGTGCCAAACAGCCACT
TGCGTGTACTGCATGACACCTTCTGGAACCCATGGAATGGCAGACCGATG
TCTTGACTGttTTTTTCTCTTCTGTGCCTTCTCAATTACAGCGGCTTGCA
TACTTTGTTCCATGTTTTTTTTCCGGGGCGGGTCATGCATGCCGCATGTT
CTGACAAGTGCATCAGACGGCTAGAACCTGCGTGCACATGCTCGCGTACT
GCAGTTGCAGCAAACACAGCAAAGGCGCACCATACGCCCAGTACCGTCCA
TTGGTTTTGGGTGTATGTTTGCCGTCGCTACTGCTGCTGCTGTGCTGCTC
CCGCTGTTTCTTCGGCTGTTGCTGCCGCTTCTGCTGTTGCCTCTTCTCTT
CCGTCTGCCCTGTCTATCTGCCTGTTCGTCCGTCTTCCTGTCGTTGCTAT
CGGCTCTGTCCAGTGTGTCTGCTAGCCGTCTGGCAGTTCTGTTTTATCCG
TTCGCCTGTCAATTACCAGGTGGCTGGTAGTTGCTGGTCTGCAAGTTCAC
CGAGTGGCCTGTCTCTCCCGCCAGCGTTGGGCCGCCATGTCGTTGCCGCT
GCCTGTTCCGTCTTGTTGCCACATCGCGTTACCTGCTCGCCCTTTTCTGT
TGTTACGGCCCGCCGCTGCCTGCTAGCTTTGTTTTGTTGCATTCCGCTGC
TGTCGGTGTTCCCGTACGTCCTCTCGCTGCCCCATCCCTTGCCGATGATA
TGCTCCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1013:16517..21224+

>mRNA_P-littoralis_Contig1013.2.1 ID=mRNA_P-littoralis_Contig1013.2.1|Name=mRNA_P-littoralis_Contig1013.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig1013:16517..21224+ (Pylaiella littoralis U1_48)
CCGAGCTTCTTCCTCCATCGCGTACGTGAGCTCCTCGATCTCGGTGACCA
GCCAGTCGACATGTCTTACTACGGACCCCAAGCTTTGTTTTGTTGCATTC
CGCTGCTGTCGGTGTTCCCGTACGTCCTCTCGCTGCCCCATCCCTTGCCG
ATGATATGCTCC
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