mRNA_P-littoralis_Contig1499.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1499.5.1
Unique NamemRNA_P-littoralis_Contig1499.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1499.5.1 vs. uniprot
Match: W6LE58_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6LE58_9TRYP)

HSP 1 Score: 98.6 bits (244), Expect = 2.590e-25
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 HNVSRWMTWLPISLKNAAKCDKWYQLQNLSITESLNANGTWKKVLVAQLQVCHVLSVEQ 177
            +NVSRWMTWLPISLKNAAKCDKWYQLQN  ITESLNANG W+K      + CH+LSVE+
Sbjct:   16 NNVSRWMTWLPISLKNAAKCDKWYQLQNHPITESLNANGAWEKPFWGHPRACHILSVER 74
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BLAST of mRNA_P-littoralis_Contig1499.5.1 vs. uniprot
Match: W6KY62_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KY62_9TRYP)

HSP 1 Score: 85.9 bits (211), Expect = 1.520e-20
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   19 MTWLPISLKNAAKCDKWYQLQNLSITESLNANGTWKKVLVAQLQVCHVLSVEQ 177
            MTWLPISLKNAAKCDKWYQLQN  ITESLNANG W+K      + CH+LSVE+
Sbjct:    1 MTWLPISLKNAAKCDKWYQLQNHPITESLNANGAWEKPSWGHPRACHILSVER 53
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BLAST of mRNA_P-littoralis_Contig1499.5.1 vs. uniprot
Match: F9W5T2_TRYCI (WGS project CAEQ00000000 data, annotated contig 1373 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9W5T2_TRYCI)

HSP 1 Score: 82.8 bits (203), Expect = 1.420e-18
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = -1 
Query:    1 LLPSAICVQRFGN*KVLQLIPLIALCCVLQRNRKPSHPSRHVV 129
            LLP A+CVQR GN  +LQLIPLIALCCVLQRNRKPSHPSRHVV
Sbjct:    9 LLPCAVCVQRLGNVMILQLIPLIALCCVLQRNRKPSHPSRHVV 51
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BLAST of mRNA_P-littoralis_Contig1499.5.1 vs. uniprot
Match: F9WGY6_TRYCI (WGS project CAEQ00000000 data, annotated contig 574 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9WGY6_TRYCI)

HSP 1 Score: 72.0 bits (175), Expect = 1.680e-14
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   19 MTWLPISLKNAAKCDKWYQLQNLSITESLNANGTWKKV 132
            MTWLPISLKNAAKCDKWYQLQN  I +SLNANG W+K+
Sbjct:    1 MTWLPISLKNAAKCDKWYQLQNHHIAQSLNANGAWEKL 38
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BLAST of mRNA_P-littoralis_Contig1499.5.1 vs. uniprot
Match: F9W3X8_TRYCI (WGS project CAEQ00000000 data, annotated contig 1125 n=2 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9W3X8_TRYCI)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-14
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   19 MTWLPISLKNAAKCDKWYQLQNLSITESLNANGTWKKV 132
            MTWLPISLKNAAKCDKWYQLQN  I +SLNANG W+K+
Sbjct:    1 MTWLPISLKNAAKCDKWYQLQNHHIAQSLNANGAWEKL 38
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BLAST of mRNA_P-littoralis_Contig1499.5.1 vs. uniprot
Match: F9WIE5_TRYCI (WGS project CAEQ00000000 data, annotated contig 777 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9WIE5_TRYCI)

HSP 1 Score: 72.0 bits (175), Expect = 6.740e-14
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   19 MTWLPISLKNAAKCDKWYQLQNLSITESLNANGTWKKV 132
            MTWLPISLKNAAKCDKWYQLQN  I +SLNANG W+K+
Sbjct:    1 MTWLPISLKNAAKCDKWYQLQNHHIAQSLNANGAWEKL 38
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BLAST of mRNA_P-littoralis_Contig1499.5.1 vs. uniprot
Match: F9W6F4_TRYCI (WGS project CAEQ00000000 data, annotated contig 1457 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9W6F4_TRYCI)

HSP 1 Score: 72.0 bits (175), Expect = 7.050e-14
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   19 MTWLPISLKNAAKCDKWYQLQNLSITESLNANGTWKKV 132
            MTWLPISLKNAAKCDKWYQLQN  I +SLNANG W+K+
Sbjct:    1 MTWLPISLKNAAKCDKWYQLQNHHIAQSLNANGAWEKL 38
[Close]
BLAST of mRNA_P-littoralis_Contig1499.5.1 vs. uniprot
Match: F9W6B3_TRYCI (WGS project CAEQ00000000 data, annotated contig 1445 n=2 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9W6B3_TRYCI)

HSP 1 Score: 72.0 bits (175), Expect = 1.120e-13
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   19 MTWLPISLKNAAKCDKWYQLQNLSITESLNANGTWKKV 132
            MTWLPISLKNAAKCDKWYQLQN  I +SLNANG W+K+
Sbjct:    1 MTWLPISLKNAAKCDKWYQLQNHHIAQSLNANGAWEKL 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1499.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
W6LE58_9TRYP2.590e-2574.58Uncharacterized protein n=1 Tax=Phytomonas sp. iso... [more]
W6KY62_9TRYP1.520e-2073.58Uncharacterized protein n=1 Tax=Phytomonas sp. iso... [more]
F9W5T2_TRYCI1.420e-1886.05WGS project CAEQ00000000 data, annotated contig 13... [more]
F9WGY6_TRYCI1.680e-1481.58WGS project CAEQ00000000 data, annotated contig 57... [more]
F9W3X8_TRYCI1.790e-1481.58WGS project CAEQ00000000 data, annotated contig 11... [more]
F9WIE5_TRYCI6.740e-1481.58WGS project CAEQ00000000 data, annotated contig 77... [more]
F9W6F4_TRYCI7.050e-1481.58WGS project CAEQ00000000 data, annotated contig 14... [more]
F9W6B3_TRYCI1.120e-1381.58WGS project CAEQ00000000 data, annotated contig 14... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1499contigP-littoralis_Contig1499:11940..12116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.7979953-CDS-P-littoralis_Contig1499:11939..120981680789707.7979953-CDS-P-littoralis_Contig1499:11939..12098Pylaiella littoralis U1_48CDSP-littoralis_Contig1499 11940..12098 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.807476-UTR-P-littoralis_Contig1499:12098..121161680789707.807476-UTR-P-littoralis_Contig1499:12098..12116Pylaiella littoralis U1_48UTRP-littoralis_Contig1499 12099..12116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1499.5.1prot_P-littoralis_Contig1499.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1499 11940..12098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1499.5.1

>prot_P-littoralis_Contig1499.5.1 ID=prot_P-littoralis_Contig1499.5.1|Name=mRNA_P-littoralis_Contig1499.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MTWLPISLKNAAKCDKWYQLQNLSITESLNANGTWKKVLVAQLQVCHVLS
VEQ
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mRNA from alignment at P-littoralis_Contig1499:11940..12116-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1499.5.1 ID=mRNA_P-littoralis_Contig1499.5.1|Name=mRNA_P-littoralis_Contig1499.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig1499:11940..12116- (Pylaiella littoralis U1_48)
CACAACGTGTCGCGATGGATGACTTGGCTTCCTATTTCGTTGAAGAACGC
AGCAAAGTGCGATAAGTGGTATCAATTGCAGAACCTTTCAATTACCGAAT
CTTTGAACGCAAATGGCACTTGGAAGAAGGTACTAGTTGCCCAACTCCAA
GTATGCCATGTCCTCAGTGTCGAACAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1499:11940..12116-

>mRNA_P-littoralis_Contig1499.5.1 ID=mRNA_P-littoralis_Contig1499.5.1|Name=mRNA_P-littoralis_Contig1499.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1499:11940..12116- (Pylaiella littoralis U1_48)
ATGACTTGGCTTCCTATTTCGTTGAAGAACGCAGCAAAGTGCGATAAGTG
GTATCAATTGCAGAACCTTTCAATTACCGAATCTTTGAACGCAAATGGCA
CTTGGAAGAAGGTACTAGTTGCCCAACTCCAAGTATGCCATGTCCTCAGT
GTCGAACAA
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