mRNA_P-littoralis_Contig1499.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1499.4.1
Unique NamemRNA_P-littoralis_Contig1499.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1499.4.1 vs. uniprot
Match: A0A1X0P410_9TRYP (Uncharacterized protein n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0P410_9TRYP)

HSP 1 Score: 55.5 bits (132), Expect = 4.740e-7
Identity = 41/73 (56.16%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   13 VRPLSLSRLQVLFTFFPKCFFKLSLTLLVRYRSSYSVFNFADTYLPIHTAFPSSATRLMPFHE--ALVSGSTG 225
            V PLSLSRLQVL     K  FKLSLTLLVRYRSSYSVFNF   ++P      S    L  F +  A V GS G
Sbjct:   96 VLPLSLSRLQVLCHSLSKVLFKLSLTLLVRYRSSYSVFNFGR-HIPASLTLHSQTVLLSWFAQGGAQVHGSMG 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1499.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1X0P410_9TRYP4.740e-756.16Uncharacterized protein n=1 Tax=Trypanosoma theile... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1499contigP-littoralis_Contig1499:11046..11402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size357
Hectar predicted targeting categorysignal peptide
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.7672665-CDS-P-littoralis_Contig1499:11045..114021680789707.7672665-CDS-P-littoralis_Contig1499:11045..11402Pylaiella littoralis U1_48CDSP-littoralis_Contig1499 11046..11402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1499.4.1prot_P-littoralis_Contig1499.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1499 11046..11402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1499.4.1

>prot_P-littoralis_Contig1499.4.1 ID=prot_P-littoralis_Contig1499.4.1|Name=mRNA_P-littoralis_Contig1499.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MSWRVRPLSLSRLQVLFTFFPKCFFKLSLTLLVRYRSSYSVFNFADTYLP
IHTAFPSSATRLMPFHEALVSGSTGYHRAWAQYSYERGLSSNGSALHIEF
HQSNNQPLIGVYATTQNR*
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mRNA from alignment at P-littoralis_Contig1499:11046..11402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1499.4.1 ID=mRNA_P-littoralis_Contig1499.4.1|Name=mRNA_P-littoralis_Contig1499.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1499:11046..11402+ (Pylaiella littoralis U1_48)
ATGTCATGGAGAGTACGTCCATTGTCGTTGTCACGACTTCAGGTTCTTTT
CACTTTCTTTCCAAAATGCTTTTTCAAACTTTCGCTCACGCTACTTGTTC
GCTATCGGTCTTCCTACTCTGTATTTAACTTTGCAGACACATACCTGCCG
ATTCACACTGCATTCCCAAGCAGTGCTACTCGCTTGATGCCGTTTCATGA
GGCTTTGGTTTCTGGCTCAACGGGCTACCACCGGGCTTGGGCTCAATACT
CCTATGAGAGAGGTCTGTCCAGCAACGGGTCTGCTTTGCACATTGAATTT
CACCAGTCCAATAACCAACCACTAATCGGCGTCTATGCCACAACTCAGAA
CCGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1499:11046..11402+

>mRNA_P-littoralis_Contig1499.4.1 ID=mRNA_P-littoralis_Contig1499.4.1|Name=mRNA_P-littoralis_Contig1499.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1499:11046..11402+ (Pylaiella littoralis U1_48)
ATGTCATGGAGAGTACGTCCATTGTCGTTGTCACGACTTCAGGTTCTTTT
CACTTTCTTTCCAAAATGCTTTTTCAAACTTTCGCTCACGCTACTTGTTC
GCTATCGGTCTTCCTACTCTGTATTTAACTTTGCAGACACATACCTGCCG
ATTCACACTGCATTCCCAAGCAGTGCTACTCGCTTGATGCCGTTTCATGA
GGCTTTGGTTTCTGGCTCAACGGGCTACCACCGGGCTTGGGCTCAATACT
CCTATGAGAGAGGTCTGTCCAGCAACGGGTCTGCTTTGCACATTGAATTT
CACCAGTCCAATAACCAACCACTAATCGGCGTCTATGCCACAACTCAGAA
CCGTTGA
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