mRNA_P-littoralis_Contig1499.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1499.2.1
Unique NamemRNA_P-littoralis_Contig1499.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1499.2.1 vs. uniprot
Match: A0A2V2WT50_TRYCR (Uncharacterized protein n=1 Tax=Trypanosoma cruzi TaxID=5693 RepID=A0A2V2WT50_TRYCR)

HSP 1 Score: 67.0 bits (162), Expect = 6.770e-12
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   16 LFGQLVLGLASGLEAFSREPPCDSIGALAARQTQKP--AAWLGVPLVLP*LPSRCLRVPLS 192
            L G LVLGLASGLEAFSREPPCDS+GALA RQT +    AW  +    P LPSR LR P +
Sbjct:  136 LSGHLVLGLASGLEAFSREPPCDSVGALAVRQTPETRGTAWEFLSYY-PILPSRYLRDPFT 195
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BLAST of mRNA_P-littoralis_Contig1499.2.1 vs. uniprot
Match: C9ZU53_TRYB9 (Uncharacterized protein n=1 Tax=Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972) TaxID=679716 RepID=C9ZU53_TRYB9)

HSP 1 Score: 64.3 bits (155), Expect = 7.420e-12
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   19 FGQLVLGLASGLEAFSREPPCDSIGALAARQTQKP--AAWLGVPLVLP*LPSRCLRVPLS 192
            +G  VLGL SGLEAFSREPPC S+GALA RQT +    AW  +    P LPSRCLR P +
Sbjct:   31 YGHPVLGLVSGLEAFSREPPCGSVGALALRQTPETRGTAWEFLSYY-PILPSRCLRDPFT 89
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BLAST of mRNA_P-littoralis_Contig1499.2.1 vs. uniprot
Match: W6LF80_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6LF80_9TRYP)

HSP 1 Score: 61.2 bits (147), Expect = 1.150e-10
Identity = 36/59 (61.02%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   22 GQLVLGLASGLEAFSREPPCDSIGALAARQTQKP--AAWLGVPLVLP*LPSRCLRVPLS 192
            G LVLGLASGLEAFSREPPCD  GALA RQT +    AW  +    P LPSR  R P +
Sbjct:    2 GHLVLGLASGLEAFSREPPCDGFGALAVRQTPETRGTAWEFLSYY-PILPSRYRRDPFT 59
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BLAST of mRNA_P-littoralis_Contig1499.2.1 vs. uniprot
Match: F9WCE2_TRYCI (WGS project CAEQ00000000 data, annotated contig 22 n=12 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9WCE2_TRYCI)

HSP 1 Score: 61.2 bits (147), Expect = 3.970e-10
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   22 GQLVLGLASGLEAFSREPPCDSIGALAARQTQKP--AAWLGVPLVLP*LPSRCLRVPLS 192
            G  VLGL SGLEAFSREPPCDS+GALA RQT +    AW  +    P LPSR LR P +
Sbjct:   74 GHPVLGLVSGLEAFSREPPCDSVGALALRQTPETRGTAWEFLSYY-PILPSRRLRDPFT 131
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BLAST of mRNA_P-littoralis_Contig1499.2.1 vs. uniprot
Match: F9W7D3_TRYCI (WGS project CAEQ00000000 data, annotated contig 1591 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9W7D3_TRYCI)

HSP 1 Score: 61.2 bits (147), Expect = 3.970e-10
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   22 GQLVLGLASGLEAFSREPPCDSIGALAARQTQKP--AAWLGVPLVLP*LPSRCLRVPLS 192
            G  VLGL SGLEAFSREPPCDS+GALA RQT +    AW  +    P LPSR LR P +
Sbjct:   67 GHPVLGLVSGLEAFSREPPCDSVGALALRQTPETRGTAWEFLSYY-PILPSRRLRDPFT 124
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BLAST of mRNA_P-littoralis_Contig1499.2.1 vs. uniprot
Match: A0A1X0NN46_9TRYP (Uncharacterized protein (Fragment) n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NN46_9TRYP)

HSP 1 Score: 51.6 bits (122), Expect = 8.710e-7
Identity = 27/37 (72.97%), Postives = 27/37 (72.97%), Query Frame = -2 
Query:    5 EFVERQALRCYRMVVLG*TPLSQKPIPRPVAQKAFLY 115
            EFVERQ LR  R VVLG TPLSQKPIPRP A    LY
Sbjct:    8 EFVERQVLRRCRTVVLGRTPLSQKPIPRPDAHYISLY 44
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1499.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V2WT50_TRYCR6.770e-1263.93Uncharacterized protein n=1 Tax=Trypanosoma cruzi ... [more]
C9ZU53_TRYB97.420e-1260.00Uncharacterized protein n=1 Tax=Trypanosoma brucei... [more]
W6LF80_9TRYP1.150e-1061.02Uncharacterized protein n=1 Tax=Phytomonas sp. iso... [more]
F9WCE2_TRYCI3.970e-1061.02WGS project CAEQ00000000 data, annotated contig 22... [more]
F9W7D3_TRYCI3.970e-1061.02WGS project CAEQ00000000 data, annotated contig 15... [more]
A0A1X0NN46_9TRYP8.710e-772.97Uncharacterized protein (Fragment) n=1 Tax=Trypano... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1499contigP-littoralis_Contig1499:7776..7975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size200
Hectar predicted targeting categorysignal peptide
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.7235503-CDS-P-littoralis_Contig1499:7775..79341680789707.7235503-CDS-P-littoralis_Contig1499:7775..7934Pylaiella littoralis U1_48CDSP-littoralis_Contig1499 7776..7934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.733369-UTR-P-littoralis_Contig1499:7934..79751680789707.733369-UTR-P-littoralis_Contig1499:7934..7975Pylaiella littoralis U1_48UTRP-littoralis_Contig1499 7935..7975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1499.2.1prot_P-littoralis_Contig1499.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1499 7776..7934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1499.2.1

>prot_P-littoralis_Contig1499.2.1 ID=prot_P-littoralis_Contig1499.2.1|Name=mRNA_P-littoralis_Contig1499.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MSIKKLFGQLVLGLASGLEAFSREPPCDSIGALAARQTQKPAAWLGVPLV
LP*
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mRNA from alignment at P-littoralis_Contig1499:7776..7975+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1499.2.1 ID=mRNA_P-littoralis_Contig1499.2.1|Name=mRNA_P-littoralis_Contig1499.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=200bp|location=Sequence derived from alignment at P-littoralis_Contig1499:7776..7975+ (Pylaiella littoralis U1_48)
ATGAGTATAAAAAAGCTTTTTGGGCAACTGGTCTTGGGATTGGCTTCTGG
CTTAGAGGCGTTCAGCCGAGAACCACCATGCGATAGCATCGGAGCGCTTG
CCGCTCGACAAACTCAGAAACCAGCGGCATGGCTAGGAGTTCCTCTCGTA
CTACCCTAACTTCCCTCACGTTGCCTGCGAGTTCCTCTCAGCTAACTCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1499:7776..7975+

>mRNA_P-littoralis_Contig1499.2.1 ID=mRNA_P-littoralis_Contig1499.2.1|Name=mRNA_P-littoralis_Contig1499.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1499:7776..7975+ (Pylaiella littoralis U1_48)
ATGAGTATAAAAAAGCTTTTTGGGCAACTGGTCTTGGGATTGGCTTCTGG
CTTAGAGGCGTTCAGCCGAGAACCACCATGCGATAGCATCGGAGCGCTTG
CCGCTCGACAAACTCAGAAACCAGCGGCATGGCTAGGAGTTCCTCTCGTA
CTACCCTAA
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