mRNA_P-littoralis_Contig1497.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1497.1.1
Unique NamemRNA_P-littoralis_Contig1497.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1497.1.1 vs. uniprot
Match: A0A6H5JZH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.250e-7
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 3 
Query:   39 VEFLIPETLSEDQMRAVPLASFAGVGLGLEHYMEIVSHQSAS--TQRYRMKEGMTKVARSTAVLISTNPGSVFPEVDPAASARV 284
            VE+ +P  L  D+ RAVPL S AG+G G+E YME VS  S +  T RYRM+  +   ARS  V +S  P   F +  PA   ++
Sbjct:  148 VEYDVPNVLPVDENRAVPLTSLAGLGQGIEGYMEEVSRASRTSLTTRYRMRRDVVDSARSNLVFMSKRPQDAFVDCRPAKMRKI 231
[Close]
BLAST of mRNA_P-littoralis_Contig1497.1.1 vs. uniprot
Match: A0A6H5KFD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.520e-5
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 3 
Query:   39 VEFLIPETLSEDQMRAVPLASFAGVGLGLEHYMEIVSHQSAS--TQRYRMKEGMTKVARSTAVLISTNPGSVFPEVDPAASARV 284
            VE+ +P  L  D+ RA+PL S AG+G G+E YME VS  S +  T RYRM+  + + A S  V++S  P   F +  PA   ++
Sbjct:  478 VEYDVPNVLPVDENRAIPLTSLAGLGQGIEGYMEEVSRASRTSLTTRYRMRRDVVEGALSKLVVMSKRPQDAFVDCRPAKMRKI 561
[Close]
BLAST of mRNA_P-littoralis_Contig1497.1.1 vs. uniprot
Match: A0A6H5K6V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.950e-5
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 3 
Query:   39 VEFLIPETLSEDQMRAVPLASFAGVGLGLEHYMEIVS--HQSASTQRYRMKEGMTKVARSTAVLISTNPGSVFPEVDP 266
            VE+ +      D+ +AVPL S AG+G G+E YME VS  ++++ ++RYRM+  + + ARS  V+IS  P   F +  P
Sbjct:   43 VEYDVHNVFPVDENKAVPLTSPAGLGQGIERYMEEVSRAYRTSLSRRYRMRRDVGESARSNLVVISKRPQDAFVDCRP 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1497.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZH6_9PHAE7.250e-742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFD4_9PHAE1.520e-540.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6V5_9PHAE5.950e-539.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1497contigP-littoralis_Contig1497:97..2689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2516
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.3565855-UTR-P-littoralis_Contig1497:96..981680789707.3565855-UTR-P-littoralis_Contig1497:96..98Pylaiella littoralis U1_48UTRP-littoralis_Contig1497 97..98 +
1680789707.3823783-UTR-P-littoralis_Contig1497:473..17831680789707.3823783-UTR-P-littoralis_Contig1497:473..1783Pylaiella littoralis U1_48UTRP-littoralis_Contig1497 474..1783 +
1680789707.3937893-UTR-P-littoralis_Contig1497:1860..26891680789707.3937893-UTR-P-littoralis_Contig1497:1860..2689Pylaiella littoralis U1_48UTRP-littoralis_Contig1497 1861..2689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789707.3659203-CDS-P-littoralis_Contig1497:98..4731680789707.3659203-CDS-P-littoralis_Contig1497:98..473Pylaiella littoralis U1_48CDSP-littoralis_Contig1497 99..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1497.1.1prot_P-littoralis_Contig1497.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1497 99..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1497.1.1

>prot_P-littoralis_Contig1497.1.1 ID=prot_P-littoralis_Contig1497.1.1|Name=mRNA_P-littoralis_Contig1497.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MELVDPSGTDEEVEFLIPETLSEDQMRAVPLASFAGVGLGLEHYMEIVSH
QSASTQRYRMKEGMTKVARSTAVLISTNPGSVFPEVDPAASARVQTATLS
KEDKLRAPLKKKLVCHRDTCPARI*
back to top

mRNA from alignment at P-littoralis_Contig1497:97..2689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1497.1.1 ID=mRNA_P-littoralis_Contig1497.1.1|Name=mRNA_P-littoralis_Contig1497.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2593bp|location=Sequence derived from alignment at P-littoralis_Contig1497:97..2689+ (Pylaiella littoralis U1_48)
ATATGGAGCTTGTTGATCCGAGTGGTACTGATGAAGAGGTGGAGTTTTTG
ATTCCGGAGACACTTTCGGAAGATCAAATGCGGGCCGTTCCTCTGGCCTC
TTTCGCTGGAGTAGGTCTAGGTCTTGAACACTACATGGAGATTGTTTCTC
ATCAATCTGCTAGTACCCAGAGGTACCGAATGAAAGAAGGCATGACAAAG
GTGGCGAGGTCAACAGCTGTGCTCATATCAACAAACCCGGGTTCGGTGTT
TCCTGAAGTAGATCCAGCCGCATCCGCTAGAGTTCAGACCGCGACCCTGT
CGAAGGAGGACAAGCTTAGAGCCCCATTAAAAAAAAAACTTGTTTGCCAC
AGGGACACTTGTCCGGCAAGGATTTGAAGCACCAAAAATAGGAAGTACAA
GGCGCTGGAGGGGGAAGAAGAAATTTTACGCCGAGGTGGTAGACATTGCA
ACGTATTACGACAGACGTCATCGGTATCAGCTCAAGTGGCAAGGTAGCCG
AGAAGAATTGCTTCTAGCAGGGGTCCCAGACGATGTCGACGAGGGCTATG
TGGAAATGCGCGTAGTACAACCTGTATAAGCTATTTAAGAATATATGAAA
TTGCTATCGGGGAATATGCGCGCACCTATGATTTGTAGGCAAGAAGTGCT
GTCGTATATTTTCGCGCGATATGTTGTTTAGGGTTCTTCTTGCGAGTTTC
AGACAGAGGTGGTGTAGTATACCTCTGTGCGCCTAAGTCGGTTGCCTTTT
TAGCTGGCTTCTTGATGTTTAGGTTCTTGCGGGTTCTCCGACAAGGGTGT
GTTGTACTACAGTACCGGCGCGCAAATGAGAAAAACACGAGTAATAAAAT
GAGGCTAAGAATTTTGAGATGTTTTGAAGAAATTCGGCGTAAGAAGTTCA
GCTCAGCCTACGGCCCCCACACTAAACCCTTTACCGGTATGTGGTAGCTA
AGAAACGGCGTGCGCATGGTGGGATAAAACAAAAGATCAAGCCTCAGGCC
GATATTATTCAGTTTCTTATACATGCTGGCCCCTACTGTATGCTTCCGAG
TGGTGCTCCAGCAGTGGTCGCCATGTGTCGTTTAACCGGGCTTGGTGTGA
CTAATGCGGCTCTTCCGGGCTCTCGGTGTCGATCGAAACACGCCCGACCT
TTTTAGCTAGCCAGGGAGAGGAGATGATTGCGGTTGAGGAAAACAAGTCA
ACTCCGGGTTGTCCCTATCACCGCTCCACGATTATTACGGCTCATGCTGT
TGTTTTGTGTGGTGTTAGCCGTCACTACAAAAGTAAACGTCAGCATCATG
TGAATGACTACGTATATGGAAACGGAAGGTTTACCTCATCTACTGCGGTT
TATTCTGATCATGACTGAAAGTCCATATTAATACATACCGGAGCGAAAAG
CTTTCCCATTATTAAAACATACCGGGGCGAAAAGCTTTCCCATTAATCTC
ACCATTACCTCGCCAGTTCCTATAAACTCATGATACTACCTGAAACGAAG
AATCGACCATGTTATCATAGACCAAAAAAGTGACCCCCCTATCGTAGGAC
GTGTCTAAAAGTGCGCGAGTTAGATGGCGGGCAGGGTGTCCCACACCCAC
TAGAGTAGGCTCGGAGGTCGCGCTGGCGAGGGGGTGAGCCCCCGGAGATC
ACTGCCTGGCGAGGAAAACGGGAGTCGGACTCCCAATGCATATCTTTTGT
CGGTTAGATGGACTTAACCACTAGAGCACTCAGTCAGCGCTGACTGAGTG
CTCTAGTGGTTAAGTCCATCTAACCGACATTATGAACTACCCTTTGCCGT
AGAAGTTCCCCGTGATTCCTGATATAATCAAGTTGCAAGGGAGGAGTAGC
TACCCACCAACGCAAATTGGTATTTCAACCGAATGTACAAGATGGAGTGT
TTGCGGAGAAGTGGAGAAACTTTCAACTTCAGGTCAACCTTACAGCAGTA
CTGTAGTAGTGGACTTGTCGTAAAAAAGGATTTCGCGTTCCTTTAAGGCA
GGAGTAGCAACGAATGCTTGATTGTTTTGGAGTTTGGTAGAGAGTACGTT
GCCTACTGTCTTGACGTGTTTTGTTTTGTTGTCTTGATTGATCTACGTAA
TGTCAGACCCGACCAATCTGGGGGGGCATTTTCTTTGTGAGGTATATGTG
TGTGTTTTTGCACGTTGGTACTTGATGATTTGAGGGCGGTCGTTTTGTGT
CTCCGTCATGCATATCAAAGTCTACCACCAACTTTGCTTTGGTGTAAGTA
CTGATTCACCTCCTTTCCTCCGATGCACACACCCCACCGTACGAGTCAAT
CCTTGTGGAGCGACAATTTCACCCTCCCAAACTAGGCGGATTTGTGCGAT
GACATCCATGCCGCGGCAAGGAGAGGTGGAGAAGGCGGACGCCGCGGCGG
AAGATGATTCCGCTTCCGCTGGGATCAAAGCAAGCGGGGCTAGATGGGTT
TCGGAAAAATATAGTTTGAATGTTTACGGTTTCTGATTCCGATTTTGTTT
CCGGTTTCATTCTTCAGAGTGTGCATCTTGTTTTTTCTATTTCAAATTTT
TTGATTTAGCACTATGCAACGCTGGCGTCAAAAATCATGGGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1497:97..2689+

>mRNA_P-littoralis_Contig1497.1.1 ID=mRNA_P-littoralis_Contig1497.1.1|Name=mRNA_P-littoralis_Contig1497.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig1497:97..2689+ (Pylaiella littoralis U1_48)
ATGGAGCTTGTTGATCCGAGTGGTACTGATGAAGAGGTGGAGTTTTTGAT
TCCGGAGACACTTTCGGAAGATCAAATGCGGGCCGTTCCTCTGGCCTCTT
TCGCTGGAGTAGGTCTAGGTCTTGAACACTACATGGAGATTGTTTCTCAT
CAATCTGCTAGTACCCAGAGGTACCGAATGAAAGAAGGCATGACAAAGGT
GGCGAGGTCAACAGCTGTGCTCATATCAACAAACCCGGGTTCGGTGTTTC
CTGAAGTAGATCCAGCCGCATCCGCTAGAGTTCAGACCGCGACCCTGTCG
AAGGAGGACAAGCTTAGAGCCCCATTAAAAAAAAAACTTGTTTGCCACAG
GGACACTTGTCCGGCAAGGATTTGA
back to top