mRNA_P-littoralis_Contig1492.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1492.2.1
Unique NamemRNA_P-littoralis_Contig1492.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1492.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1492contigP-littoralis_Contig1492:7440..7859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.8411262-UTR-P-littoralis_Contig1492:7439..75501680789706.8411262-UTR-P-littoralis_Contig1492:7439..7550Pylaiella littoralis U1_48UTRP-littoralis_Contig1492 7440..7550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.851543-CDS-P-littoralis_Contig1492:7550..78591680789706.851543-CDS-P-littoralis_Contig1492:7550..7859Pylaiella littoralis U1_48CDSP-littoralis_Contig1492 7551..7859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1492.2.1prot_P-littoralis_Contig1492.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1492 7551..7859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1492.2.1

>prot_P-littoralis_Contig1492.2.1 ID=prot_P-littoralis_Contig1492.2.1|Name=mRNA_P-littoralis_Contig1492.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
AVRLFLTVNVTLTWRFDSPTRIQQENPPPPPPPPTREQPCCTNHATAPTR
TRSLEHRCRSNLIERVPLCSQVDHSSLVAVGSGCGEILAAVCVGDGKTDE
TK*
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mRNA from alignment at P-littoralis_Contig1492:7440..7859-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1492.2.1 ID=mRNA_P-littoralis_Contig1492.2.1|Name=mRNA_P-littoralis_Contig1492.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1492:7440..7859- (Pylaiella littoralis U1_48)
GCGGTGAGGCTGTTTCTCACGGTCAACGTTACTTTGACCTGGCGTTTTGA
CTCCCCTACAAGAATCCAACAAGAGAACCCCCCCCCCCCCCCCCCCCCCC
CCACCCGCGAACAGCCCTGTTGCACAAATCATGCGACAGCACCAACCAGA
ACTCGATCCCTAGAGCACAGATGCCGATCAAACCTGATAGAGCGTGTGCC
CCTTTGTTCTCAAGTTGACCACAGCAGTTTGGTGGCAGTGGGTTCGGGCT
GTGGCGAAATTTTGGCGGCGGTGTGTGTTGGAGATGGAAAGACAGATGAA
ACGAAATAACAGACTTCGCTCCTGTTTTTCCGGCCAAAAAACAGGCCCGT
ACAGCGTTTTTGTTTTCACCGGATTTTCCTACCTCAACCCACTCCGCCGC
CGAAACCTCGCCACAGCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1492:7440..7859-

>mRNA_P-littoralis_Contig1492.2.1 ID=mRNA_P-littoralis_Contig1492.2.1|Name=mRNA_P-littoralis_Contig1492.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig1492:7440..7859- (Pylaiella littoralis U1_48)
GCGGTGAGGCTGTTTCTCACGGTCAACGTTACTTTGACCTGGCGTTTTGA
CTCCCCTACAAGAATCCAACAAGAGAACCCCCCCCCCCCCCCCCCCCCCC
CCACCCGCGAACAGCCCTGTTGCACAAATCATGCGACAGCACCAACCAGA
ACTCGATCCCTAGAGCACAGATGCCGATCAAACCTGATAGAGCGTGTGCC
CCTTTGTTCTCAAGTTGACCACAGCAGTTTGGTGGCAGTGGGTTCGGGCT
GTGGCGAAATTTTGGCGGCGGTGTGTGTTGGAGATGGAAAGACAGATGAA
ACGAAATAA
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