mRNA_P-littoralis_Contig1491.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1491.3.1
Unique NamemRNA_P-littoralis_Contig1491.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1491.3.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.210e-15
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3 
Query:    6 IFKPPEMAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 221
            +F+P   +F R+  AH +LR LHG+    D  L   PLP+ TAR RLLL+AI+VGND+AKF+++GP  A RL
Sbjct:  175 LFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTARRRLLLFAIIVGNDFAKFKNVGPVTAARL 246
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BLAST of mRNA_P-littoralis_Contig1491.3.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.220e-15
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:    6 IFKPPEMAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 221
            +F+P   +F R+  AH +LR LHG+ T  D  L   PLP+ TAR RL+L+A++VGND+AKF+++GP  A RL
Sbjct:  420 LFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLVLFAMIVGNDFAKFKNVGPVTAARL 491
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BLAST of mRNA_P-littoralis_Contig1491.3.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.030e-14
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 3 
Query:    6 IFKPPEMAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 221
            +F+P   +F R+  AH +LR LHG+    D  L   PLP+ T R RLLL+A++VGND+AKF+++GP  A RL
Sbjct:  148 LFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTGRRRLLLFAVIVGNDFAKFKNVGPVTAARL 219
[Close]
BLAST of mRNA_P-littoralis_Contig1491.3.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 7.240e-12
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 3 
Query:    6 IFKPPEMAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 221
            +F+P   +F R+      LR LHG+    D      PLP+ TAR RLLL+AI+VG D+AKF+++GP  A RL
Sbjct:  148 LFQPTTWSFLRSGDVRGRLRQLHGIHQPVDEGFDYTPLPEPTARRRLLLFAIIVGKDFAKFKNVGPVTAARL 219
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1491.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0K2_ECTSI2.210e-1551.39Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A6H5KVY6_9PHAE2.220e-1550.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G4G5_ECTSI1.030e-1448.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZU5_ECTSI7.240e-1245.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1491contigP-littoralis_Contig1491:5107..5342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size236
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.57e-14
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size213
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.578085-CDS-P-littoralis_Contig1491:5106..53191680789706.578085-CDS-P-littoralis_Contig1491:5106..5319Pylaiella littoralis U1_48CDSP-littoralis_Contig1491 5107..5319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.613559-UTR-P-littoralis_Contig1491:5319..53421680789706.613559-UTR-P-littoralis_Contig1491:5319..5342Pylaiella littoralis U1_48UTRP-littoralis_Contig1491 5320..5342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1491.3.1prot_P-littoralis_Contig1491.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1491 5107..5319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1491.3.1

>prot_P-littoralis_Contig1491.3.1 ID=prot_P-littoralis_Contig1491.3.1|Name=mRNA_P-littoralis_Contig1491.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MAFRRNTTAHAFLRLLHGLPTEYDPALVANPLPDATARDRLLLYAIVVGN
DYAKFEHIGPAAAGRLLQSLP
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mRNA from alignment at P-littoralis_Contig1491:5107..5342-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1491.3.1 ID=mRNA_P-littoralis_Contig1491.3.1|Name=mRNA_P-littoralis_Contig1491.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=236bp|location=Sequence derived from alignment at P-littoralis_Contig1491:5107..5342- (Pylaiella littoralis U1_48)
ACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGAAACACTACAGCT
CATGCGTTCCTTCGCCTGCTGCACGGCCTGCCTACAGAGTACGACCCGGC
ATTGGTAGCCAACCCTCTGCCCGACGCGACTGCTCGAGATCGCCTACTTC
TTTACGCCATTGTCGTGGGTAACGACTACGCAAAATTCGAGCACATTGGG
CCGGCTGCGGCGGGGAGATTACTACAGTCCCTGCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1491:5107..5342-

>mRNA_P-littoralis_Contig1491.3.1 ID=mRNA_P-littoralis_Contig1491.3.1|Name=mRNA_P-littoralis_Contig1491.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig1491:5107..5342- (Pylaiella littoralis U1_48)
ATGGCATTCAGAAGAAACACTACAGCTCATGCGTTCCTTCGCCTGCTGCA
CGGCCTGCCTACAGAGTACGACCCGGCATTGGTAGCCAACCCTCTGCCCG
ACGCGACTGCTCGAGATCGCCTACTTCTTTACGCCATTGTCGTGGGTAAC
GACTACGCAAAATTCGAGCACATTGGGCCGGCTGCGGCGGGGAGATTACT
ACAGTCCCTGCCT
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