mRNA_P-littoralis_Contig1491.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1491.2.1
Unique NamemRNA_P-littoralis_Contig1491.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1491.2.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.340e-15
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:    2 VVRESRLEDSQEARLNVMRKLQTAHNIFQHAVVWNPIADTLQHFSGSAPAQTIARDTGTLALSSVARRIAWGEVSPSTG 238
            VV++S+ E++  A      KL+ AHN+F +AVVW+P+ +TL+HFSG+A +  I +DTGTL  SSVA  IA GEVSP+TG
Sbjct:  314 VVQDSKEEETPAALEEAEEKLRRAHNMFHNAVVWDPLKNTLRHFSGAASSLAITKDTGTLEFSSVASGIASGEVSPTTG 392
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BLAST of mRNA_P-littoralis_Contig1491.2.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 6.230e-13
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 2 
Query:    2 VVRESRLEDSQEARLNVMRKLQTAHNIFQHAVVWNPIADTLQHFSGSAPAQTIARDTGTLALSSVARRIAWGEVSPSTG 238
            VV++S+ E++  A      KL+ + N+F +AVVW+P+ +TL+HFS +A +  I +DTGTL  SSVA  IA GEVSP+TG
Sbjct:   91 VVQDSKEEETPAALEEAEEKLRRSQNMFHNAVVWDPLKNTLRHFSCAASSLAITKDTGTLEFSSVASGIASGEVSPTTG 169
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BLAST of mRNA_P-littoralis_Contig1491.2.1 vs. uniprot
Match: D7G3Y3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y3_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.660e-10
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2 
Query:   80 IFQHAVVWNPIADTLQHFSGSAPAQTIARDTGTLALSSVARRIAWGEVSPSTG 238
            +F +AVVW+P+ +TL+HFSG+A +  I  DTGTL  SSVA  IA GEVSP+TG
Sbjct:    1 MFHNAVVWDPLKNTLRHFSGAASSLAITNDTGTLEFSSVASGIASGEVSPTTG 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1491.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE1.340e-1553.16Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FQM4_ECTSI6.230e-1349.37Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3Y3_ECTSI1.660e-1060.38Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1491contigP-littoralis_Contig1491:4205..5029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size248
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.5265093-CDS-P-littoralis_Contig1491:4205..42781680789706.5265093-CDS-P-littoralis_Contig1491:4205..4278Pylaiella littoralis U1_48CDSP-littoralis_Contig1491 4206..4278 -
1680789706.5416472-CDS-P-littoralis_Contig1491:4856..50291680789706.5416472-CDS-P-littoralis_Contig1491:4856..5029Pylaiella littoralis U1_48CDSP-littoralis_Contig1491 4857..5029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1491.2.1prot_P-littoralis_Contig1491.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1491 4206..5029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1491.2.1

>prot_P-littoralis_Contig1491.2.1 ID=prot_P-littoralis_Contig1491.2.1|Name=mRNA_P-littoralis_Contig1491.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
RCPRVEIGGQSGSEVECDEEATNSSQHISTRRRVEPHCGYSTALLRVGSG
ANHRQRHRNTGVVIGSPQNSLGRGFSKYWARV
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mRNA from alignment at P-littoralis_Contig1491:4205..5029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1491.2.1 ID=mRNA_P-littoralis_Contig1491.2.1|Name=mRNA_P-littoralis_Contig1491.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=825bp|location=Sequence derived from alignment at P-littoralis_Contig1491:4205..5029- (Pylaiella littoralis U1_48)
CGTTGTCCGAGAGTCGAGATTGGAGGACAGTCAGGAAGCGAGGTTGAATG
TGATGAGGAAGCTACAAACAGCTCACAACATATTTCAACACGCCGTCGTG
TGGAACCCCATTGCGGATACTCTACAGCACTTCTCCGGGTCGGCTCCGGC
GCAAACCATCGCCAGAGACACAGGTCAGGTTGACTGCAACAAACCTCGCT
GCTGCCTACATTGTTACCTGCAGCGGTCTACCTCCGTAACGAATAATATC
GCACGACATTTACACCCTTTGTACGCCGTCACGAACATGAACCGTTGTCA
TGTCGTAGGGGCGACATCGCTTTGACCGCCATATGCCGTATAGGACAACG
AAAAAATTTATCAAAACAACGGCTCTTGCATGGAAGCAATGGAGCACGTC
GCCAAAAACAATGTCGACGACATCACCGGCGCTAAGAACGCGCTTTGCAA
GTCCAGGATTGGCGACGTAAAAATTAGCTTGGAGGTCTCAAGATAATCAC
TGTAGGAGGTGGCGAACGACAAAATGGCCACTCTCATGGCGGCATTTAGG
TGCAGAAGGGTAAGTGGGTCACTTGGGCAAGCGTTTCTTTCGAGCGCCTG
TAGCCCCCATCGTGTTTTGTTCCCGACAGGTACAAGTAATCACATGTTGC
CAAGTAAAACGCCACGTATCGAGCATCATCCAAGTTTCAAGTACGATAAC
GCAGCCCGATTGCTTCTTTTACACGTCACGTTTCGCAATTGTTTGGACCA
GGAACACTGGCGTTGTCATCGGTAGCCCGCAGAATAGCTTGGGGCGAGGT
TTCTCCAAGTACTGGGCTAGAGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1491:4205..5029-

>mRNA_P-littoralis_Contig1491.2.1 ID=mRNA_P-littoralis_Contig1491.2.1|Name=mRNA_P-littoralis_Contig1491.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig1491:4205..5029- (Pylaiella littoralis U1_48)
CGTTGTCCGAGAGTCGAGATTGGAGGACAGTCAGGAAGCGAGGTTGAATG
TGATGAGGAAGCTACAAACAGCTCACAACATATTTCAACACGCCGTCGTG
TGGAACCCCATTGCGGATACTCTACAGCACTTCTCCGGGTCGGCTCCGGC
GCAAACCATCGCCAGAGACACAGGAACACTGGCGTTGTCATCGGTAGCCC
GCAGAATAGCTTGGGGCGAGGTTTCTCCAAGTACTGGGCTAGAGTG
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